Wall clock time and date at job start Tue Mar 31 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34777 * 116.99709 * 2 1 4 4 O 1.21533 * 120.00303 * 359.97438 * 3 2 1 5 5 C 1.47243 * 119.99706 * 179.72464 * 3 2 1 6 6 C 1.40043 * 120.61775 * 0.26891 * 5 3 2 7 7 C 1.38308 * 118.36876 * 179.97438 * 6 5 3 8 8 C 1.38426 * 119.52905 * 0.02562 * 7 6 5 9 9 N 1.31812 * 121.24295 * 0.02562 * 8 7 6 10 10 C 1.32511 * 121.77725 * 359.67636 * 9 8 7 11 11 S 1.76201 * 119.84502 * 180.31335 * 10 9 8 12 12 C 1.80997 * 99.99786 * 0.27200 * 11 10 9 13 13 C 1.52995 * 109.47145 * 179.97438 * 12 11 10 14 14 C 1.53005 * 109.47282 * 299.99883 * 13 12 11 15 15 C 1.52998 * 109.47314 * 59.99780 * 13 12 11 16 16 C 1.50703 * 109.47315 * 179.97438 * 13 12 11 17 17 H 1.08000 * 120.00128 * 0.02562 * 16 13 12 18 18 C 1.37873 * 120.00068 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00036 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 120.00059 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47235 * 60.00145 * 20 18 16 22 22 H 1.48496 * 109.47151 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46843 * 299.99997 * 20 18 16 24 24 H 1.08997 * 109.46942 * 60.00366 * 1 2 3 25 25 H 1.09007 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47583 * 300.00355 * 1 2 3 27 27 H 1.07997 * 120.81533 * 359.95934 * 6 5 3 28 28 H 1.08000 * 120.23675 * 180.02562 * 7 6 5 29 29 H 1.07992 * 119.37817 * 179.97438 * 8 7 6 30 30 H 1.09003 * 109.47030 * 300.00103 * 12 11 10 31 31 H 1.09005 * 109.47477 * 59.99422 * 12 11 10 32 32 H 1.08996 * 109.46882 * 59.99538 * 14 13 12 33 33 H 1.08998 * 109.47429 * 179.97438 * 14 13 12 34 34 H 1.09000 * 109.46841 * 300.00423 * 14 13 12 35 35 H 1.09003 * 109.46752 * 59.99895 * 15 13 12 36 36 H 1.08998 * 109.47398 * 180.02562 * 15 13 12 37 37 H 1.08996 * 109.47308 * 300.00742 * 15 13 12 38 38 H 0.97000 * 119.99704 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4019 2.2202 -0.0005 5 6 3.5342 1.2780 0.0061 6 6 4.3096 0.1118 0.0063 7 6 5.6869 0.2383 0.0117 8 6 6.2560 1.5001 0.0171 9 7 5.5099 2.5867 0.0179 10 6 4.1863 2.5243 0.0071 11 16 3.2384 4.0097 0.0003 12 6 4.5720 5.2334 0.0034 13 6 3.9725 6.6410 -0.0024 14 6 3.1146 6.8248 -1.2559 15 6 3.1035 6.8304 1.2425 16 6 5.0828 7.6600 0.0008 17 1 6.1131 7.3360 0.0061 18 6 4.7834 9.0058 -0.0039 19 7 3.5288 9.4004 -0.0108 20 14 6.1597 10.2689 -0.0006 21 1 7.0034 10.0848 -1.2087 22 1 5.5778 11.6351 -0.0062 23 1 6.9920 10.0908 1.2163 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.8435 -0.8624 0.0027 28 1 6.3138 -0.6411 0.0116 29 1 7.3317 1.5961 0.0217 30 1 5.1834 5.1022 0.8962 31 1 5.1909 5.0988 -0.8837 32 1 2.3116 6.0878 -1.2578 33 1 2.6871 7.8275 -1.2599 34 1 3.7337 6.6898 -2.1428 35 1 3.7147 6.6995 2.1355 36 1 2.6760 7.8331 1.2381 37 1 2.3005 6.0934 1.2407 38 1 3.3183 10.3472 -0.0138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570583011.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:38 Heat of formation + Delta-G solvation = -69.933484 kcal Electronic energy + Delta-G solvation = -21312.775983 eV Core-core repulsion = 18053.051204 eV Total energy + Delta-G solvation = -3259.724779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.74682 -40.47381 -37.90859 -37.48163 -33.93479 -33.49537 -32.54674 -28.77091 -28.04106 -27.63859 -27.16917 -25.60248 -24.76610 -22.37960 -20.88301 -19.29688 -18.67213 -18.07258 -17.92611 -17.43328 -17.06130 -16.66971 -16.21270 -15.50986 -15.47558 -15.14400 -14.79653 -14.60483 -14.15876 -14.12444 -13.96621 -13.40464 -13.29469 -13.07203 -12.91657 -12.70926 -12.54758 -12.27820 -12.27178 -12.08056 -11.80716 -11.50973 -11.26501 -11.10863 -11.10478 -10.77077 -10.61347 -10.39722 -10.35647 -8.55909 -8.01003 -6.18983 -0.57553 0.12810 0.64217 1.42194 1.44523 1.45793 1.47391 1.52801 1.64177 2.46283 2.66569 3.21197 3.49575 3.72484 3.79104 3.98973 4.26013 4.33141 4.34858 4.36400 4.40830 4.50907 4.72588 4.74382 4.91696 4.97739 5.00986 5.03771 5.14476 5.16709 5.25330 5.40821 5.55108 5.60487 5.64809 6.04755 6.17176 6.40332 6.63762 6.70037 6.84651 7.48319 8.98230 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023049 B = 0.004238 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.526788 B = 6605.341490 C = 7623.504947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.350 6.350 3 C 0.503 3.497 4 O -0.508 6.508 5 C -0.198 4.198 6 C 0.006 3.994 7 C -0.182 4.182 8 C 0.143 3.857 9 N -0.525 5.525 10 C 0.137 3.863 11 S -0.003 6.003 12 C -0.089 4.089 13 C 0.070 3.930 14 C -0.121 4.121 15 C -0.121 4.121 16 C -0.524 4.524 17 H 0.049 0.951 18 C 0.024 3.976 19 N -0.905 5.905 20 Si 0.952 3.048 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 H 0.059 0.941 25 H 0.141 0.859 26 H 0.059 0.941 27 H 0.183 0.817 28 H 0.192 0.808 29 H 0.194 0.806 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.063 0.937 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.063 0.937 37 H 0.026 0.974 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 -23.655 0.021 23.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.266 6.266 3 C 0.348 3.652 4 O -0.399 6.399 5 C -0.210 4.210 6 C -0.020 4.020 7 C -0.206 4.206 8 C -0.019 4.019 9 N -0.238 5.238 10 C -0.111 4.111 11 S 0.245 5.755 12 C -0.237 4.237 13 C 0.069 3.931 14 C -0.179 4.179 15 C -0.179 4.179 16 C -0.564 4.564 17 H 0.067 0.933 18 C -0.176 4.176 19 N -0.543 5.543 20 Si 0.778 3.222 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.199 1.199 24 H 0.078 0.922 25 H 0.159 0.841 26 H 0.078 0.922 27 H 0.201 0.799 28 H 0.209 0.791 29 H 0.211 0.789 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.031 -22.006 0.021 22.030 hybrid contribution 1.340 0.309 0.003 1.375 sum 0.310 -21.697 0.024 21.700 Atomic orbital electron populations 1.23595 0.74201 1.05997 1.02490 1.86494 1.25173 1.30687 1.84266 1.20986 0.88904 0.82068 0.73259 1.90855 1.66490 1.36328 1.46210 1.19683 0.90675 0.94682 1.15964 1.22212 0.94148 0.97710 0.87977 1.22519 0.95076 0.99935 1.03022 1.23798 1.01780 0.87875 0.88489 1.68312 1.03732 1.34775 1.17008 1.23833 0.94162 0.97436 0.95626 1.86993 1.09237 0.92893 1.86354 1.23804 0.98935 0.97576 1.03425 1.18022 0.93693 0.88442 0.92963 1.21722 0.97764 1.01192 0.97243 1.21721 0.97755 1.01194 0.97247 1.21276 0.92386 0.91353 1.51342 0.93260 1.25584 0.97524 0.99885 0.94582 1.69946 1.18094 1.15619 1.50678 0.85707 0.79673 0.78176 0.78608 1.19930 1.20852 1.19942 0.92200 0.84091 0.92211 0.79937 0.79072 0.78902 0.91603 0.91616 0.95505 0.91793 0.95863 0.95868 0.91797 0.95511 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.57 113.37 1.20 1.68 16 2 O -0.35 -7.66 9.89 -56.89 -0.56 -8.22 16 3 C 0.50 14.96 7.88 70.19 0.55 15.51 16 4 O -0.51 -18.76 13.59 19.73 0.27 -18.49 16 5 C -0.20 -5.65 5.91 -19.88 -0.12 -5.77 16 6 C 0.01 0.11 9.73 22.72 0.22 0.33 16 7 C -0.18 -2.65 10.09 22.33 0.23 -2.42 16 8 C 0.14 3.01 11.16 84.74 0.95 3.96 16 9 N -0.52 -17.14 9.13 -190.81 -1.74 -18.88 16 10 C 0.14 4.85 7.02 85.18 0.60 5.45 16 11 S 0.00 -0.14 16.03 -56.49 -0.91 -1.05 16 12 C -0.09 -4.15 3.78 71.98 0.27 -3.88 16 13 C 0.07 3.67 0.52 -52.93 -0.03 3.64 16 14 C -0.12 -6.28 8.01 71.98 0.58 -5.71 16 15 C -0.12 -6.28 8.01 71.98 0.58 -5.71 16 16 C -0.52 -29.38 8.01 25.60 0.21 -29.17 16 17 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 18 C 0.02 1.31 5.15 84.65 0.44 1.75 16 19 N -0.90 -51.58 9.35 21.45 0.20 -51.38 16 20 Si 0.95 44.04 29.54 68.60 2.03 46.06 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.14 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.18 1.98 7.70 -2.91 -0.02 1.96 16 28 H 0.19 0.91 8.06 -2.91 -0.02 0.89 16 29 H 0.19 2.66 8.06 -2.91 -0.02 2.63 16 30 H 0.07 3.11 8.12 -2.39 -0.02 3.09 16 31 H 0.07 3.10 8.13 -2.39 -0.02 3.08 16 32 H 0.03 1.29 6.91 -2.39 -0.02 1.28 16 33 H 0.06 3.58 6.07 -2.39 -0.01 3.56 16 34 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 3.58 6.07 -2.39 -0.01 3.56 16 37 H 0.03 1.29 6.91 -2.39 -0.02 1.27 16 38 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -70.95 327.46 6.01 -64.94 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.06 Total: 7.36 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 5.66 Total: -20.34 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: -1.54 Total: -70.26 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.29 Total: -26.71 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -0.91 Total: -1.05 kcal Total: -70.95 6.01 -64.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570583011.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.993 kcal (2) G-P(sol) polarization free energy of solvation -70.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds