Wall clock time and date at job start Tue Mar 31 2020 06:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99604 * 2 1 4 4 C 1.50692 * 119.99972 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.47161 * 95.00536 * 4 2 1 6 6 C 1.46506 * 119.99805 * 279.34449 * 5 4 2 7 7 S 1.65598 * 120.00474 * 99.34350 * 5 4 2 8 8 O 1.42105 * 106.40017 * 344.21822 * 7 5 4 9 9 O 1.42100 * 106.40227 * 211.30229 * 7 5 4 10 10 C 1.76194 * 107.21779 * 97.75796 * 7 5 4 11 11 C 1.37642 * 120.12817 * 114.14387 * 10 7 5 12 12 C 1.38606 * 120.24937 * 179.97438 * 11 10 7 13 13 C 1.38660 * 120.50227 * 0.02562 * 12 11 10 14 14 C 1.37593 * 120.24589 * 0.02892 * 13 12 11 15 15 C 1.40702 * 120.12754 * 293.86144 * 10 7 5 16 16 C 1.41396 * 120.24254 * 0.02562 * 15 10 7 17 17 H 1.08001 * 119.99954 * 327.01213 * 16 15 10 18 18 C 1.39948 * 119.99743 * 147.02092 * 16 15 10 19 19 N 1.30818 * 120.00027 * 350.01857 * 18 16 15 20 20 Si 1.86794 * 119.99876 * 170.02411 * 18 16 15 21 21 H 1.48508 * 109.47177 * 59.99808 * 20 18 16 22 22 H 1.48498 * 109.47330 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47227 * 300.00147 * 20 18 16 24 24 H 1.07997 * 119.99856 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99983 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46592 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47303 * 299.99684 * 3 2 1 28 28 H 1.09003 * 109.47223 * 59.99953 * 3 2 1 29 29 H 1.08996 * 109.47613 * 335.00182 * 4 2 1 30 30 H 1.09006 * 109.46887 * 215.00074 * 4 2 1 31 31 H 1.09003 * 109.47009 * 270.00331 * 6 5 4 32 32 H 1.09001 * 109.46757 * 29.99690 * 6 5 4 33 33 H 1.08996 * 109.47411 * 149.99689 * 6 5 4 34 34 H 1.08008 * 119.87228 * 359.97438 * 11 10 7 35 35 H 1.08007 * 119.75207 * 179.97438 * 12 11 10 36 36 H 1.07999 * 119.87396 * 179.97438 * 13 12 11 37 37 H 1.08001 * 120.12474 * 179.97438 * 14 13 12 38 38 H 0.96996 * 120.00091 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 7 2.4120 -1.6683 -1.3752 6 6 1.4143 -2.3024 -2.2405 7 16 3.9337 -1.3622 -1.9523 8 8 4.5268 -0.4385 -1.0500 9 8 3.7917 -1.1080 -3.3432 10 6 4.8555 -2.8572 -1.8113 11 6 5.2869 -3.5122 -2.9424 12 6 6.0127 -4.6881 -2.8344 13 6 6.3120 -5.2184 -1.5887 14 6 5.8899 -4.5813 -0.4445 15 6 5.1585 -3.3830 -0.5419 16 6 4.7251 -2.7159 0.6272 17 1 4.6569 -1.6382 0.6401 18 6 4.3848 -3.4524 1.7675 19 7 4.2782 -4.7543 1.6976 20 14 4.0828 -2.5762 3.3893 21 1 2.9591 -1.6180 3.2326 22 1 3.7397 -3.5738 4.4345 23 1 5.3087 -1.8402 3.7902 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 3.1351 1.1060 0.0005 27 1 1.8002 1.8767 -0.8900 28 1 1.8001 1.8768 0.8900 29 1 1.4386 -2.0852 0.4352 30 1 2.9742 -1.1985 0.5900 31 1 1.4753 -3.3854 -2.1325 32 1 0.4182 -1.9644 -1.9547 33 1 1.6069 -2.0293 -3.2780 34 1 5.0591 -3.1082 -3.9178 35 1 6.3469 -5.1956 -3.7273 36 1 6.8778 -6.1355 -1.5163 37 1 6.1238 -4.9964 0.5247 38 1 4.0427 -5.2648 2.4881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590591808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:56 Heat of formation + Delta-G solvation = -39.449952 kcal Electronic energy + Delta-G solvation = -22948.634400 eV Core-core repulsion = 19690.231486 eV Total energy + Delta-G solvation = -3258.402914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -37.64334 -37.02426 -36.28793 -34.87667 -33.91534 -33.43492 -30.24729 -29.59723 -27.33471 -26.98561 -25.51194 -23.92223 -21.65881 -21.16768 -18.69224 -17.93469 -17.49911 -17.02572 -16.05353 -15.56404 -15.35753 -14.64331 -14.23438 -14.16748 -13.66300 -13.34006 -13.21121 -12.96190 -12.78655 -12.75241 -12.16592 -12.00617 -11.83718 -11.45168 -11.30882 -11.28487 -11.20207 -11.08617 -11.04549 -10.82550 -10.69601 -10.59039 -10.29594 -9.88982 -9.47036 -9.24016 -8.86623 -8.38638 -8.03531 -7.58927 -7.05618 -4.81075 1.46241 2.31142 2.48691 2.70840 2.94004 2.98474 3.07552 3.74216 3.94249 4.37262 4.73606 5.16461 5.24280 5.29531 5.33738 5.58645 5.77612 5.94332 5.95949 5.97845 6.02283 6.17284 6.20172 6.22676 6.36335 6.37850 6.42043 6.59794 6.77988 6.86350 6.93035 7.01777 7.12583 7.30427 7.32232 7.48965 7.66705 7.77011 7.91604 8.31560 8.49772 8.62312 9.89107 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.010096 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.954796 B = 2772.667721 C = 4266.823388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 C -0.136 4.136 4 C 0.151 3.849 5 N -0.988 5.988 6 C 0.090 3.910 7 S 2.704 3.296 8 O -0.970 6.970 9 O -0.996 6.996 10 C -0.773 4.773 11 C -0.006 4.006 12 C -0.245 4.245 13 C -0.077 4.077 14 C -0.154 4.154 15 C 0.196 3.804 16 C -0.484 4.484 17 H 0.117 0.883 18 C 0.082 3.918 19 N -0.782 5.782 20 Si 0.901 3.099 21 H -0.253 1.253 22 H -0.275 1.275 23 H -0.257 1.257 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 3.105 0.041 6.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.132 4.132 3 C -0.193 4.193 4 C 0.026 3.974 5 N -0.822 5.822 6 C -0.056 4.056 7 S 2.803 3.197 8 O -0.960 6.960 9 O -0.987 6.987 10 C -0.868 4.868 11 C -0.026 4.026 12 C -0.265 4.265 13 C -0.096 4.096 14 C -0.174 4.174 15 C 0.192 3.808 16 C -0.512 4.512 17 H 0.134 0.866 18 C -0.138 4.138 19 N -0.405 5.405 20 Si 0.724 3.276 21 H -0.177 1.177 22 H -0.200 1.200 23 H -0.181 1.181 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.599 3.701 -0.150 6.713 hybrid contribution -0.134 -0.792 0.916 1.218 sum -5.732 2.909 0.766 6.474 Atomic orbital electron populations 1.23619 0.95241 1.01298 1.03406 1.22427 0.95749 0.97081 0.97956 1.21050 1.02664 0.94364 1.01214 1.20610 1.01799 0.92183 0.82807 1.57229 1.28383 1.75980 1.20651 1.21421 0.92525 0.97454 0.94154 1.01017 0.72115 0.74715 0.71874 1.93443 1.75652 1.61882 1.65057 1.93427 1.86403 1.85699 1.33196 1.29969 1.29062 1.27978 0.99748 1.20267 0.93309 0.93318 0.95700 1.20521 1.10008 0.99686 0.96323 1.20921 0.97688 0.97590 0.93416 1.21468 1.00530 0.98130 0.97266 1.17011 0.84325 0.89927 0.89580 1.20433 1.38410 0.96936 0.95460 0.86572 1.25950 0.92485 0.94696 1.00707 1.69771 1.32040 1.07017 1.31711 0.86436 0.80934 0.80300 0.79917 1.17715 1.20008 1.18092 0.88912 0.88662 0.89462 0.92082 0.91806 0.90687 0.86907 0.92963 0.91533 0.90762 0.87428 0.88627 0.88753 0.86126 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.65 13.50 29.01 0.39 -2.26 16 2 C -0.13 -2.07 5.59 -101.07 -0.56 -2.64 16 3 C -0.14 -2.10 10.05 36.01 0.36 -1.73 16 4 C 0.15 2.74 4.89 -5.20 -0.03 2.72 16 5 N -0.99 -18.82 3.16 -123.05 -0.39 -19.21 16 6 C 0.09 1.45 10.68 59.85 0.64 2.09 16 7 S 2.70 59.73 5.09 -107.50 -0.55 59.19 16 8 O -0.97 -22.60 12.92 -57.17 -0.74 -23.34 16 9 O -1.00 -22.93 15.74 -57.17 -0.90 -23.83 16 10 C -0.77 -18.52 5.97 -38.87 -0.23 -18.75 16 11 C -0.01 -0.14 9.53 -39.66 -0.38 -0.52 16 12 C -0.25 -5.35 10.05 -39.29 -0.39 -5.75 16 13 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 14 C -0.15 -3.78 8.63 -38.88 -0.34 -4.11 16 15 C 0.20 4.93 5.50 -106.82 -0.59 4.34 16 16 C -0.48 -11.72 6.41 -37.74 -0.24 -11.96 16 17 H 0.12 2.80 4.05 -52.49 -0.21 2.59 16 18 C 0.08 1.87 5.24 -17.34 -0.09 1.78 16 19 N -0.78 -18.20 11.08 55.55 0.62 -17.59 16 20 Si 0.90 17.20 29.57 -169.99 -5.03 12.17 16 21 H -0.25 -4.63 7.11 56.52 0.40 -4.23 16 22 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 23 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 24 H 0.09 1.09 8.05 -52.49 -0.42 0.67 16 25 H 0.10 1.18 7.99 -52.49 -0.42 0.77 16 26 H 0.09 1.53 6.32 -51.93 -0.33 1.20 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.28 7.98 -51.93 -0.41 0.86 16 30 H 0.11 2.26 4.38 -51.93 -0.23 2.03 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.89 7.64 -51.93 -0.40 0.50 16 33 H 0.07 1.18 7.11 -51.93 -0.37 0.81 16 34 H 0.11 2.28 7.32 -52.48 -0.38 1.89 16 35 H 0.10 1.81 8.06 -52.48 -0.42 1.38 16 36 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 37 H 0.12 2.97 6.51 -52.49 -0.34 2.63 16 38 H 0.29 6.08 8.30 -40.82 -0.34 5.75 16 LS Contribution 321.15 15.07 4.84 4.84 Total: -1.00 -27.64 321.15 -8.77 -36.41 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -4.76 Total: 10.26 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: -1.86 Total: -38.90 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.23 Total: -36.80 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -1.64 Total: -47.17 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Atomic # 16 Polarization: 59.73 SS G_CDS: -0.55 Total: 59.19 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.64 -8.77 -36.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590591808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.040 kcal (2) G-P(sol) polarization free energy of solvation -27.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds