Wall clock time and date at job start Tue Mar 31 2020 06:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99604 * 2 1 4 4 C 1.50692 * 119.99972 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.47161 * 95.00536 * 4 2 1 6 6 C 1.46506 * 119.99805 * 279.34449 * 5 4 2 7 7 S 1.65598 * 120.00474 * 99.34350 * 5 4 2 8 8 O 1.42105 * 106.40017 * 344.21822 * 7 5 4 9 9 O 1.42100 * 106.40227 * 211.30229 * 7 5 4 10 10 C 1.76194 * 107.21779 * 97.75796 * 7 5 4 11 11 C 1.37642 * 120.12817 * 114.14387 * 10 7 5 12 12 C 1.38606 * 120.24937 * 179.97438 * 11 10 7 13 13 C 1.38660 * 120.50227 * 0.02562 * 12 11 10 14 14 C 1.37593 * 120.24589 * 0.02892 * 13 12 11 15 15 C 1.40702 * 120.12754 * 293.86144 * 10 7 5 16 16 C 1.41396 * 120.24254 * 0.02562 * 15 10 7 17 17 H 1.08001 * 119.99954 * 327.01213 * 16 15 10 18 18 C 1.39948 * 119.99743 * 147.02092 * 16 15 10 19 19 N 1.30818 * 120.00027 * 350.01857 * 18 16 15 20 20 Si 1.86794 * 119.99876 * 170.02411 * 18 16 15 21 21 H 1.48508 * 109.47177 * 59.99808 * 20 18 16 22 22 H 1.48498 * 109.47330 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47227 * 300.00147 * 20 18 16 24 24 H 1.07997 * 119.99856 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99983 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46592 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47303 * 299.99684 * 3 2 1 28 28 H 1.09003 * 109.47223 * 59.99953 * 3 2 1 29 29 H 1.08996 * 109.47613 * 335.00182 * 4 2 1 30 30 H 1.09006 * 109.46887 * 215.00074 * 4 2 1 31 31 H 1.09003 * 109.47009 * 270.00331 * 6 5 4 32 32 H 1.09001 * 109.46757 * 29.99690 * 6 5 4 33 33 H 1.08996 * 109.47411 * 149.99689 * 6 5 4 34 34 H 1.08008 * 119.87228 * 359.97438 * 11 10 7 35 35 H 1.08007 * 119.75207 * 179.97438 * 12 11 10 36 36 H 1.07999 * 119.87396 * 179.97438 * 13 12 11 37 37 H 1.08001 * 120.12474 * 179.97438 * 14 13 12 38 38 H 0.96996 * 120.00091 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 7 2.4120 -1.6683 -1.3752 6 6 1.4143 -2.3024 -2.2405 7 16 3.9337 -1.3622 -1.9523 8 8 4.5268 -0.4385 -1.0500 9 8 3.7917 -1.1080 -3.3432 10 6 4.8555 -2.8572 -1.8113 11 6 5.2869 -3.5122 -2.9424 12 6 6.0127 -4.6881 -2.8344 13 6 6.3120 -5.2184 -1.5887 14 6 5.8899 -4.5813 -0.4445 15 6 5.1585 -3.3830 -0.5419 16 6 4.7251 -2.7159 0.6272 17 1 4.6569 -1.6382 0.6401 18 6 4.3848 -3.4524 1.7675 19 7 4.2782 -4.7543 1.6976 20 14 4.0828 -2.5762 3.3893 21 1 2.9591 -1.6180 3.2326 22 1 3.7397 -3.5738 4.4345 23 1 5.3087 -1.8402 3.7902 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 3.1351 1.1060 0.0005 27 1 1.8002 1.8767 -0.8900 28 1 1.8001 1.8768 0.8900 29 1 1.4386 -2.0852 0.4352 30 1 2.9742 -1.1985 0.5900 31 1 1.4753 -3.3854 -2.1325 32 1 0.4182 -1.9644 -1.9547 33 1 1.6069 -2.0293 -3.2780 34 1 5.0591 -3.1082 -3.9178 35 1 6.3469 -5.1956 -3.7273 36 1 6.8778 -6.1355 -1.5163 37 1 6.1238 -4.9964 0.5247 38 1 4.0427 -5.2648 2.4881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590591808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:55 Heat of formation + Delta-G solvation = -55.047436 kcal Electronic energy + Delta-G solvation = -22949.310758 eV Core-core repulsion = 19690.231486 eV Total energy + Delta-G solvation = -3259.079272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.40287 -38.43604 -37.97530 -36.65668 -35.64586 -34.73510 -32.01668 -31.37964 -28.67393 -28.13038 -27.26266 -25.31251 -23.42143 -22.94227 -20.11463 -19.60954 -19.06048 -18.63144 -17.76281 -17.17496 -16.96665 -16.13836 -15.73333 -15.66997 -15.09182 -14.96614 -14.88496 -14.44175 -14.29017 -13.93280 -13.78475 -13.59647 -13.43433 -13.01902 -12.99841 -12.93228 -12.82974 -12.55836 -12.50767 -12.37983 -12.14555 -12.04144 -11.86343 -11.62761 -11.17055 -10.98570 -10.00618 -9.90962 -9.72936 -9.39634 -8.77205 -6.61739 -0.20290 0.52534 0.96665 1.32992 1.38414 1.47826 1.50180 2.16292 2.36757 2.63577 3.00700 3.47330 3.71891 3.95706 4.02974 4.22984 4.29962 4.47731 4.57264 4.68171 4.71398 4.79830 4.81890 4.93065 4.95930 5.01955 5.11912 5.15202 5.20067 5.27381 5.28570 5.53666 5.67446 5.74154 5.78235 5.87513 5.98060 6.06448 6.14217 6.51383 6.72055 6.82676 8.19970 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.010096 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.954796 B = 2772.667721 C = 4266.823388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.162 4.162 3 C -0.136 4.136 4 C 0.148 3.852 5 N -0.986 5.986 6 C 0.084 3.916 7 S 2.716 3.284 8 O -0.988 6.988 9 O -1.010 7.010 10 C -0.794 4.794 11 C -0.021 4.021 12 C -0.247 4.247 13 C -0.077 4.077 14 C -0.182 4.182 15 C 0.169 3.831 16 C -0.500 4.500 17 H 0.110 0.890 18 C 0.055 3.945 19 N -0.805 5.805 20 Si 0.951 3.049 21 H -0.240 1.240 22 H -0.262 1.262 23 H -0.263 1.263 24 H 0.116 0.884 25 H 0.109 0.891 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 3.273 0.288 8.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C -0.193 4.193 4 C 0.024 3.976 5 N -0.823 5.823 6 C -0.061 4.061 7 S 2.813 3.187 8 O -0.979 6.979 9 O -1.001 7.001 10 C -0.887 4.887 11 C -0.041 4.041 12 C -0.267 4.267 13 C -0.096 4.096 14 C -0.202 4.202 15 C 0.165 3.835 16 C -0.528 4.528 17 H 0.128 0.872 18 C -0.164 4.164 19 N -0.428 5.428 20 Si 0.771 3.229 21 H -0.163 1.163 22 H -0.186 1.186 23 H -0.187 1.187 24 H 0.134 0.866 25 H 0.127 0.873 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.128 0.872 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.359 3.848 0.081 8.304 hybrid contribution 0.373 -0.878 0.782 1.234 sum -6.986 2.970 0.863 7.640 Atomic orbital electron populations 1.23886 0.94201 1.03059 0.99260 1.22280 0.96588 0.95870 1.01644 1.21032 1.00810 0.94812 1.02615 1.20632 1.01224 0.93938 0.81827 1.57056 1.27522 1.76177 1.21515 1.21638 0.93266 0.97402 0.93774 1.00559 0.72654 0.74046 0.71405 1.93412 1.76684 1.62422 1.65370 1.93397 1.86867 1.85785 1.34002 1.30335 1.29838 1.28712 0.99825 1.20594 0.93540 0.93932 0.96033 1.20915 1.09051 0.99355 0.97382 1.21262 0.97060 0.98269 0.92963 1.21525 1.02013 0.98930 0.97702 1.17333 0.85080 0.90684 0.90447 1.20513 1.39310 0.96769 0.96241 0.87219 1.26571 0.91757 0.95128 1.02952 1.69799 1.32157 1.08029 1.32864 0.85684 0.80939 0.79772 0.76514 1.16337 1.18594 1.18710 0.86580 0.87324 0.92405 0.91307 0.89824 0.89886 0.89271 0.92987 0.88395 0.90738 0.86173 0.85385 0.85858 0.87160 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 13.50 67.78 0.92 -2.93 16 2 C -0.16 -4.84 5.59 -16.49 -0.09 -4.93 16 3 C -0.14 -4.03 10.05 71.24 0.72 -3.31 16 4 C 0.15 5.28 4.89 85.63 0.42 5.70 16 5 N -0.99 -37.13 3.16 -543.22 -1.72 -38.85 16 6 C 0.08 2.58 10.68 127.77 1.36 3.95 16 7 S 2.72 121.59 5.09 -56.49 -0.29 121.30 16 8 O -0.99 -47.47 12.92 -128.00 -1.65 -49.13 16 9 O -1.01 -46.62 15.74 -128.00 -2.02 -48.63 16 10 C -0.79 -38.66 5.97 22.73 0.14 -38.53 16 11 C -0.02 -0.97 9.53 22.22 0.21 -0.76 16 12 C -0.25 -10.51 10.05 22.46 0.23 -10.28 16 13 C -0.08 -3.39 10.02 22.22 0.22 -3.16 16 14 C -0.18 -9.07 8.63 22.73 0.20 -8.87 16 15 C 0.17 8.70 5.50 -21.29 -0.12 8.58 16 16 C -0.50 -24.83 6.41 23.46 0.15 -24.68 16 17 H 0.11 5.50 4.05 -2.91 -0.01 5.48 16 18 C 0.05 2.51 5.24 85.26 0.45 2.95 16 19 N -0.80 -37.77 11.08 21.83 0.24 -37.53 16 20 Si 0.95 34.88 29.57 68.60 2.03 36.91 16 21 H -0.24 -8.24 7.11 99.48 0.71 -7.53 16 22 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 23 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 24 H 0.12 2.18 8.05 -2.91 -0.02 2.16 16 25 H 0.11 2.23 7.99 -2.91 -0.02 2.21 16 26 H 0.06 2.05 6.32 -2.38 -0.02 2.03 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.08 2.73 7.98 -2.39 -0.02 2.71 16 30 H 0.09 3.62 4.38 -2.38 -0.01 3.61 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.10 2.35 7.64 -2.39 -0.02 2.33 16 33 H 0.07 2.27 7.11 -2.39 -0.02 2.26 16 34 H 0.12 5.04 7.32 -2.91 -0.02 5.02 16 35 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 36 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 37 H 0.11 5.59 6.51 -2.91 -0.02 5.58 16 38 H 0.29 12.48 8.30 -92.71 -0.77 11.71 16 Total: -1.00 -59.97 321.15 2.46 -57.51 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: 1.07 Total: 34.68 kcal Atomic # 6 Polarization: -81.07 SS G_CDS: 4.80 Total: -76.27 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -1.48 Total: -76.38 kcal Atomic # 8 Polarization: -94.09 SS G_CDS: -3.67 Total: -97.76 kcal Atomic # 14 Polarization: 34.88 SS G_CDS: 2.03 Total: 36.91 kcal Atomic # 16 Polarization: 121.59 SS G_CDS: -0.29 Total: 121.30 kcal Total: -59.97 2.46 -57.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590591808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.464 kcal (2) G-P(sol) polarization free energy of solvation -59.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds