Wall clock time and date at job start Tue Mar 31 2020 07:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47015 * 2 1 4 4 N 1.46495 * 109.46825 * 120.00054 * 2 1 3 5 5 S 1.65603 * 120.00120 * 264.99455 * 4 2 1 6 6 O 1.42099 * 106.40360 * 178.54181 * 5 4 2 7 7 O 1.42097 * 106.40254 * 311.46709 * 5 4 2 8 8 C 1.76204 * 107.21678 * 65.00325 * 5 4 2 9 9 C 1.38650 * 119.87756 * 269.73058 * 8 5 4 10 10 C 1.38616 * 120.50418 * 179.72109 * 9 8 5 11 11 C 1.37641 * 120.24582 * 0.55012 * 10 9 8 12 12 C 1.40699 * 119.73993 * 359.72474 * 11 10 9 13 13 C 1.41405 * 120.23894 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99732 * 150.21663 * 13 12 11 15 15 C 1.39947 * 120.00134 * 330.21864 * 13 12 11 16 16 N 1.30815 * 120.00192 * 161.72765 * 15 13 12 17 17 Si 1.86805 * 119.99719 * 341.72799 * 15 13 12 18 18 H 1.48502 * 109.46834 * 95.41200 * 17 15 13 19 19 H 1.48499 * 109.46945 * 215.40718 * 17 15 13 20 20 H 1.48495 * 109.47222 * 335.41176 * 17 15 13 21 21 C 1.37595 * 119.87309 * 89.99619 * 8 5 4 22 22 C 1.52997 * 109.46685 * 239.99899 * 2 1 3 23 23 C 1.53004 * 117.49991 * 65.00601 * 22 2 1 24 24 C 1.53001 * 117.50174 * 356.38085 * 22 2 1 25 25 H 1.09002 * 109.46976 * 59.99388 * 1 2 3 26 26 H 1.08997 * 109.47464 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47225 * 300.00277 * 1 2 3 28 28 H 0.96999 * 120.00550 * 85.00091 * 4 2 1 29 29 H 1.08001 * 119.74894 * 359.97438 * 9 8 5 30 30 H 1.07994 * 119.87756 * 180.25556 * 10 9 8 31 31 H 1.07995 * 120.12896 * 179.75027 * 11 10 9 32 32 H 0.96999 * 120.00735 * 180.02562 * 16 15 13 33 33 H 1.07998 * 120.13250 * 359.97438 * 21 8 5 34 34 H 1.09002 * 115.56078 * 210.68761 * 22 2 1 35 35 H 1.08996 * 117.49935 * 145.01503 * 23 22 2 36 36 H 1.09000 * 117.49597 * 359.97438 * 23 22 2 37 37 H 1.08999 * 117.49878 * 0.02562 * 24 22 2 38 38 H 1.09005 * 117.49443 * 214.97512 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 16 2.4122 0.1772 2.5505 6 8 2.8124 -0.7698 3.5315 7 8 3.2437 1.2443 2.1155 8 6 0.9276 0.9148 3.1474 9 6 0.5560 2.1750 2.7046 10 6 -0.6123 2.7651 3.1613 11 6 -1.4113 2.1089 4.0698 12 6 -1.0411 0.8320 4.5304 13 6 -1.8544 0.1481 5.4634 14 1 -1.8824 -0.9315 5.4659 15 6 -2.6229 0.8702 6.3834 16 7 -3.6255 0.2929 6.9939 17 14 -2.2171 2.6585 6.7394 18 1 -3.0645 3.5363 5.8929 19 1 -2.4790 2.9497 8.1719 20 1 -0.7855 2.9110 6.4366 21 6 0.1442 0.2402 4.0555 22 6 2.0399 -0.7213 -1.2492 23 6 1.7347 -0.0846 -2.6066 24 6 0.9984 -1.3542 -2.1742 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 2.1110 -1.6562 1.1949 29 1 1.1793 2.6992 1.9954 30 1 -0.8941 3.7454 2.8065 31 1 -2.3189 2.5721 4.4274 32 1 -4.1585 0.7934 7.6313 33 1 0.4374 -0.7397 4.4020 34 1 2.9940 -1.2367 -1.1383 35 1 2.4879 -0.1812 -3.3886 36 1 1.1703 0.8478 -2.6096 37 1 -0.0501 -1.2564 -1.8929 38 1 1.2673 -2.2861 -2.6717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590759845.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:50 Heat of formation + Delta-G solvation = -37.390239 kcal Electronic energy + Delta-G solvation = -21867.212904 eV Core-core repulsion = 18608.899306 eV Total energy + Delta-G solvation = -3258.313598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.63636 -37.94652 -36.74200 -35.40301 -34.36161 -33.80095 -30.77308 -30.19250 -29.20561 -25.40853 -24.53330 -22.53201 -22.36209 -20.94780 -19.96569 -19.22563 -18.08406 -17.18312 -16.59814 -16.30763 -15.36627 -15.23245 -14.86412 -14.60828 -14.41476 -13.88882 -13.46984 -13.19360 -12.89913 -12.48780 -12.17502 -12.07461 -11.83655 -11.75461 -11.69953 -11.62304 -11.49137 -11.47666 -11.10988 -10.90042 -10.77522 -10.47717 -10.42223 -10.22228 -10.01411 -9.79398 -9.40249 -9.18924 -8.29393 -7.89943 -7.10816 -4.66350 0.89999 1.88757 2.39088 2.97603 3.10107 3.19141 3.37555 3.70769 3.83679 4.09695 4.30929 4.51725 4.74828 4.83808 4.95014 5.01368 5.14093 5.24197 5.41872 5.51546 5.63874 5.72389 5.79687 5.90470 5.98391 5.98613 6.02625 6.17912 6.29025 6.42690 6.43887 6.56049 6.83910 7.03558 7.17043 7.18010 7.36670 7.59562 7.74888 8.15923 8.40052 8.59286 9.91034 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022040 B = 0.004783 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.093528 B = 5853.083046 C = 6176.541063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.181 3.819 3 H 0.095 0.905 4 N -1.114 6.114 5 S 2.688 3.312 6 O -0.969 6.969 7 O -0.972 6.972 8 C -0.623 4.623 9 C -0.158 4.158 10 C -0.092 4.092 11 C -0.198 4.198 12 C 0.074 3.926 13 C -0.443 4.443 14 H 0.095 0.905 15 C 0.084 3.916 16 N -0.800 5.800 17 Si 0.906 3.094 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.243 1.243 21 C -0.101 4.101 22 C -0.158 4.158 23 C -0.175 4.175 24 C -0.183 4.183 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.415 0.585 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.288 0.712 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.573 -0.246 -13.822 14.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.074 3.926 3 H 0.112 0.888 4 N -0.871 5.871 5 S 2.783 3.217 6 O -0.960 6.960 7 O -0.962 6.962 8 C -0.715 4.715 9 C -0.179 4.179 10 C -0.111 4.111 11 C -0.218 4.218 12 C 0.070 3.930 13 C -0.471 4.471 14 H 0.113 0.887 15 C -0.136 4.136 16 N -0.423 5.423 17 Si 0.732 3.268 18 H -0.194 1.194 19 H -0.213 1.213 20 H -0.166 1.166 21 C -0.122 4.122 22 C -0.178 4.178 23 C -0.213 4.213 24 C -0.220 4.220 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.248 0.752 29 H 0.129 0.871 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.196 -0.045 -13.262 14.639 hybrid contribution -0.848 0.479 0.325 1.027 sum 5.348 0.434 -12.938 14.006 Atomic orbital electron populations 1.22525 0.94973 1.03065 1.03428 1.20221 0.93943 0.95799 0.82652 0.88757 1.55623 1.84136 1.19555 1.27761 1.01724 0.74583 0.73204 0.72171 1.93555 1.81872 1.62349 1.58210 1.93522 1.65038 1.55912 1.81745 1.29939 1.22015 1.07036 1.12469 1.20038 0.98701 0.94517 1.04627 1.20695 0.94779 0.98201 0.97423 1.21297 1.00715 0.98237 1.01510 1.17785 0.90936 0.91672 0.92638 1.19524 1.18647 0.96558 1.12399 0.88695 1.26153 0.92035 1.00921 0.94457 1.69671 1.12046 1.39717 1.20883 0.86375 0.82049 0.81371 0.76998 1.19434 1.21322 1.16633 1.20839 0.93679 0.99806 0.97844 1.22573 1.00402 1.04144 0.90692 1.22963 1.03609 0.97587 0.97112 1.23201 0.98597 0.96866 1.03340 0.91713 0.91624 0.90387 0.75168 0.87119 0.87945 0.87658 0.90167 0.86292 0.87221 0.88787 0.88467 0.87691 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 8.09 37.16 0.30 -1.90 16 2 C 0.18 2.20 3.28 -67.93 -0.22 1.98 16 3 H 0.09 1.20 7.50 -51.93 -0.39 0.81 16 4 N -1.11 -14.93 5.47 -4.89 -0.03 -14.96 16 5 S 2.69 47.56 5.72 -107.50 -0.61 46.95 16 6 O -0.97 -19.61 17.27 -57.17 -0.99 -20.59 16 7 O -0.97 -18.85 16.60 -57.17 -0.95 -19.79 16 8 C -0.62 -12.54 5.05 -39.66 -0.20 -12.74 16 9 C -0.16 -3.09 8.61 -39.29 -0.34 -3.43 16 10 C -0.09 -1.86 10.02 -39.66 -0.40 -2.25 16 11 C -0.20 -4.50 7.18 -38.87 -0.28 -4.77 16 12 C 0.07 1.79 5.11 -106.82 -0.55 1.24 16 13 C -0.44 -11.50 9.57 -37.74 -0.36 -11.86 16 14 H 0.10 2.56 8.06 -52.49 -0.42 2.14 16 15 C 0.08 2.13 5.40 -17.34 -0.09 2.03 16 16 N -0.80 -20.52 13.93 55.55 0.77 -19.75 16 17 Si 0.91 19.99 24.52 -169.99 -4.17 15.82 16 18 H -0.27 -5.66 6.71 56.52 0.38 -5.28 16 19 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.24 -5.56 6.86 56.52 0.39 -5.17 16 21 C -0.10 -2.26 9.26 -38.87 -0.36 -2.62 16 22 C -0.16 -1.58 5.93 -90.62 -0.54 -2.11 16 23 C -0.17 -1.50 9.95 -26.73 -0.27 -1.76 16 24 C -0.18 -1.58 9.50 -26.73 -0.25 -1.83 16 25 H 0.06 0.66 7.18 -51.93 -0.37 0.29 16 26 H 0.06 0.75 7.23 -51.93 -0.38 0.38 16 27 H 0.08 1.14 6.18 -51.93 -0.32 0.82 16 28 H 0.41 4.65 8.84 -34.47 -0.30 4.35 16 29 H 0.11 1.94 7.59 -52.49 -0.40 1.54 16 30 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.11 2.36 4.73 -52.49 -0.25 2.11 16 32 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 33 H 0.12 2.59 7.60 -52.49 -0.40 2.19 16 34 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.80 7.93 -51.93 -0.41 0.39 16 37 H 0.10 0.91 5.82 -51.93 -0.30 0.61 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -29.72 320.57 -9.50 -39.23 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -4.81 Total: 8.31 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: -3.55 Total: -40.04 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.75 Total: -34.71 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -1.94 Total: -40.39 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.17 Total: 15.82 kcal Atomic # 16 Polarization: 47.56 SS G_CDS: -0.61 Total: 46.95 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.72 -9.50 -39.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590759845.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.837 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds