Wall clock time and date at job start Tue Mar 31 2020 07:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47015 * 2 1 4 4 N 1.46495 * 109.46825 * 120.00054 * 2 1 3 5 5 S 1.65603 * 120.00120 * 264.99455 * 4 2 1 6 6 O 1.42099 * 106.40360 * 178.54181 * 5 4 2 7 7 O 1.42097 * 106.40254 * 311.46709 * 5 4 2 8 8 C 1.76204 * 107.21678 * 65.00325 * 5 4 2 9 9 C 1.38650 * 119.87756 * 269.73058 * 8 5 4 10 10 C 1.38616 * 120.50418 * 179.72109 * 9 8 5 11 11 C 1.37641 * 120.24582 * 0.55012 * 10 9 8 12 12 C 1.40699 * 119.73993 * 359.72474 * 11 10 9 13 13 C 1.41405 * 120.23894 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99732 * 150.21663 * 13 12 11 15 15 C 1.39947 * 120.00134 * 330.21864 * 13 12 11 16 16 N 1.30815 * 120.00192 * 161.72765 * 15 13 12 17 17 Si 1.86805 * 119.99719 * 341.72799 * 15 13 12 18 18 H 1.48502 * 109.46834 * 95.41200 * 17 15 13 19 19 H 1.48499 * 109.46945 * 215.40718 * 17 15 13 20 20 H 1.48495 * 109.47222 * 335.41176 * 17 15 13 21 21 C 1.37595 * 119.87309 * 89.99619 * 8 5 4 22 22 C 1.52997 * 109.46685 * 239.99899 * 2 1 3 23 23 C 1.53004 * 117.49991 * 65.00601 * 22 2 1 24 24 C 1.53001 * 117.50174 * 356.38085 * 22 2 1 25 25 H 1.09002 * 109.46976 * 59.99388 * 1 2 3 26 26 H 1.08997 * 109.47464 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47225 * 300.00277 * 1 2 3 28 28 H 0.96999 * 120.00550 * 85.00091 * 4 2 1 29 29 H 1.08001 * 119.74894 * 359.97438 * 9 8 5 30 30 H 1.07994 * 119.87756 * 180.25556 * 10 9 8 31 31 H 1.07995 * 120.12896 * 179.75027 * 11 10 9 32 32 H 0.96999 * 120.00735 * 180.02562 * 16 15 13 33 33 H 1.07998 * 120.13250 * 359.97438 * 21 8 5 34 34 H 1.09002 * 115.56078 * 210.68761 * 22 2 1 35 35 H 1.08996 * 117.49935 * 145.01503 * 23 22 2 36 36 H 1.09000 * 117.49597 * 359.97438 * 23 22 2 37 37 H 1.08999 * 117.49878 * 0.02562 * 24 22 2 38 38 H 1.09005 * 117.49443 * 214.97512 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 16 2.4122 0.1772 2.5505 6 8 2.8124 -0.7698 3.5315 7 8 3.2437 1.2443 2.1155 8 6 0.9276 0.9148 3.1474 9 6 0.5560 2.1750 2.7046 10 6 -0.6123 2.7651 3.1613 11 6 -1.4113 2.1089 4.0698 12 6 -1.0411 0.8320 4.5304 13 6 -1.8544 0.1481 5.4634 14 1 -1.8824 -0.9315 5.4659 15 6 -2.6229 0.8702 6.3834 16 7 -3.6255 0.2929 6.9939 17 14 -2.2171 2.6585 6.7394 18 1 -3.0645 3.5363 5.8929 19 1 -2.4790 2.9497 8.1719 20 1 -0.7855 2.9110 6.4366 21 6 0.1442 0.2402 4.0555 22 6 2.0399 -0.7213 -1.2492 23 6 1.7347 -0.0846 -2.6066 24 6 0.9984 -1.3542 -2.1742 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 2.1110 -1.6562 1.1949 29 1 1.1793 2.6992 1.9954 30 1 -0.8941 3.7454 2.8065 31 1 -2.3189 2.5721 4.4274 32 1 -4.1585 0.7934 7.6313 33 1 0.4374 -0.7397 4.4020 34 1 2.9940 -1.2367 -1.1383 35 1 2.4879 -0.1812 -3.3886 36 1 1.1703 0.8478 -2.6096 37 1 -0.0501 -1.2564 -1.8929 38 1 1.2673 -2.2861 -2.6717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590759845.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:50 Heat of formation + Delta-G solvation = -57.561236 kcal Electronic energy + Delta-G solvation = -21868.087584 eV Core-core repulsion = 18608.899306 eV Total energy + Delta-G solvation = -3259.188278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.74078 -39.41818 -38.26568 -36.94621 -35.65540 -35.32583 -32.55345 -31.88731 -30.23919 -27.23797 -25.42778 -24.08777 -23.14241 -22.68689 -20.89789 -20.66422 -19.71528 -18.51475 -18.06751 -17.63203 -17.00015 -16.69956 -16.43351 -15.69702 -15.51715 -15.32842 -14.84432 -14.68301 -14.53707 -14.08351 -13.64204 -13.39310 -13.26142 -13.22707 -13.11815 -13.05960 -12.84350 -12.72057 -12.54114 -12.21426 -12.05805 -11.81276 -11.79054 -11.57263 -11.23919 -11.10428 -10.94497 -10.39281 -9.97620 -9.67617 -8.96944 -6.59438 -0.54916 0.18715 0.65552 1.20514 1.35796 1.42779 2.01903 2.07330 2.41612 2.74814 2.97920 3.30431 3.40143 3.76974 3.97049 4.14877 4.18976 4.20831 4.29424 4.34399 4.44832 4.49279 4.72245 4.76609 4.83619 4.88030 4.97173 5.06895 5.08742 5.20708 5.34424 5.36612 5.38204 5.43970 5.46509 5.63400 5.76585 5.99278 6.13395 6.24511 6.58379 6.69690 8.11360 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022040 B = 0.004783 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.093528 B = 5853.083046 C = 6176.541063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.175 3.825 3 H 0.093 0.907 4 N -1.098 6.098 5 S 2.715 3.285 6 O -0.997 6.997 7 O -0.982 6.982 8 C -0.629 4.629 9 C -0.138 4.138 10 C -0.094 4.094 11 C -0.203 4.203 12 C 0.056 3.944 13 C -0.484 4.484 14 H 0.061 0.939 15 C 0.050 3.950 16 N -0.842 5.842 17 Si 0.956 3.044 18 H -0.247 1.247 19 H -0.275 1.275 20 H -0.256 1.256 21 C -0.120 4.120 22 C -0.171 4.171 23 C -0.167 4.167 24 C -0.179 4.179 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.426 0.574 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.108 0.892 32 H 0.296 0.704 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.707 1.621 -16.508 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.069 3.931 3 H 0.111 0.889 4 N -0.860 5.860 5 S 2.807 3.193 6 O -0.987 6.987 7 O -0.972 6.972 8 C -0.718 4.718 9 C -0.159 4.159 10 C -0.113 4.113 11 C -0.223 4.223 12 C 0.053 3.947 13 C -0.514 4.514 14 H 0.079 0.921 15 C -0.165 4.165 16 N -0.468 5.468 17 Si 0.778 3.222 18 H -0.172 1.172 19 H -0.201 1.201 20 H -0.180 1.180 21 C -0.141 4.141 22 C -0.191 4.191 23 C -0.205 4.205 24 C -0.216 4.216 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.263 0.737 29 H 0.159 0.841 30 H 0.161 0.839 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.303 1.824 -15.944 17.632 hybrid contribution -1.037 -0.118 0.898 1.377 sum 6.266 1.706 -15.046 16.388 Atomic orbital electron populations 1.22522 0.94977 1.03277 1.03137 1.20417 0.93936 0.95962 0.82795 0.88944 1.55299 1.83818 1.20132 1.26748 1.00931 0.73481 0.72679 0.72239 1.93518 1.82125 1.62908 1.60132 1.93508 1.64912 1.56783 1.81998 1.30376 1.22439 1.07410 1.11528 1.20562 0.98266 0.93798 1.03232 1.21143 0.94254 0.99688 0.96189 1.21485 1.01265 0.97608 1.01935 1.17920 0.91350 0.92768 0.92699 1.19487 1.21528 0.95261 1.15077 0.92129 1.26776 0.91631 1.04230 0.93893 1.69697 1.13295 1.41368 1.22406 0.85632 0.81096 0.77650 0.77778 1.17219 1.20130 1.18010 1.20849 0.93998 1.00096 0.99136 1.22491 1.01106 1.05257 0.90205 1.23085 1.03625 0.97685 0.96108 1.23265 0.98212 0.97587 1.02540 0.89569 0.91290 0.93011 0.73704 0.84066 0.83914 0.87426 0.89349 0.87022 0.86751 0.87487 0.88028 0.87784 0.87972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.97 8.09 71.98 0.58 -3.38 16 2 C 0.18 3.80 3.28 44.99 0.15 3.95 16 3 H 0.09 2.06 7.50 -2.39 -0.02 2.04 16 4 N -1.10 -27.45 5.47 -169.39 -0.93 -28.38 16 5 S 2.71 92.14 5.72 -56.49 -0.32 91.81 16 6 O -1.00 -39.91 17.27 -128.00 -2.21 -42.12 16 7 O -0.98 -35.63 16.60 -128.00 -2.12 -37.75 16 8 C -0.63 -24.57 5.05 22.22 0.11 -24.46 16 9 C -0.14 -5.00 8.61 22.46 0.19 -4.80 16 10 C -0.09 -3.50 10.02 22.22 0.22 -3.28 16 11 C -0.20 -9.02 7.18 22.73 0.16 -8.86 16 12 C 0.06 2.78 5.11 -21.29 -0.11 2.67 16 13 C -0.48 -26.61 9.57 23.46 0.22 -26.39 16 14 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 15 C 0.05 2.63 5.40 85.26 0.46 3.09 16 16 N -0.84 -45.07 13.93 21.83 0.30 -44.76 16 17 Si 0.96 41.15 24.52 68.60 1.68 42.84 16 18 H -0.25 -9.72 6.71 99.48 0.67 -9.06 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.26 -11.44 6.86 99.48 0.68 -10.75 16 21 C -0.12 -5.50 9.26 22.73 0.21 -5.29 16 22 C -0.17 -2.89 5.93 -10.79 -0.06 -2.95 16 23 C -0.17 -2.28 9.95 30.60 0.30 -1.97 16 24 C -0.18 -2.53 9.50 30.60 0.29 -2.24 16 25 H 0.09 1.51 7.18 -2.39 -0.02 1.49 16 26 H 0.07 1.46 7.23 -2.39 -0.02 1.44 16 27 H 0.05 1.41 6.18 -2.39 -0.01 1.40 16 28 H 0.43 8.86 8.84 -96.75 -0.85 8.00 16 29 H 0.14 4.30 7.59 -2.91 -0.02 4.27 16 30 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 31 H 0.11 4.68 4.73 -2.91 -0.01 4.67 16 32 H 0.30 14.16 8.30 -92.71 -0.77 13.40 16 33 H 0.11 5.13 7.60 -2.91 -0.02 5.11 16 34 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.30 7.93 -2.39 -0.02 1.28 16 37 H 0.10 1.50 5.82 -2.39 -0.01 1.49 16 38 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -65.37 320.57 -0.69 -66.06 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.17 Total: 26.22 kcal Atomic # 6 Polarization: -76.66 SS G_CDS: 2.74 Total: -73.92 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -0.62 Total: -73.14 kcal Atomic # 8 Polarization: -75.54 SS G_CDS: -4.33 Total: -79.87 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.68 Total: 42.84 kcal Atomic # 16 Polarization: 92.14 SS G_CDS: -0.32 Total: 91.81 kcal Total: -65.37 -0.69 -66.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590759845.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.498 kcal (2) G-P(sol) polarization free energy of solvation -65.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds