Wall clock time and date at job start Tue Mar 31 2020 06:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46914 * 2 1 4 4 C 1.31003 * 120.00356 * 125.78807 * 3 2 1 5 5 C 1.50697 * 119.99368 * 7.20254 * 4 3 2 6 6 N 1.46498 * 109.47126 * 128.95991 * 5 4 3 7 7 S 1.65606 * 120.00138 * 164.99523 * 6 5 4 8 8 O 1.42098 * 106.40098 * 178.54300 * 7 6 5 9 9 O 1.42093 * 106.40017 * 311.46210 * 7 6 5 10 10 C 1.76198 * 107.21385 * 65.00319 * 7 6 5 11 11 C 1.38655 * 119.87692 * 269.72505 * 10 7 6 12 12 C 1.38609 * 120.50485 * 179.72784 * 11 10 7 13 13 C 1.37645 * 120.24618 * 0.54631 * 12 11 10 14 14 C 1.40696 * 119.74054 * 359.73552 * 13 12 11 15 15 C 1.41396 * 120.24254 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00166 * 212.98509 * 15 14 13 17 17 C 1.39954 * 120.00196 * 32.98191 * 15 14 13 18 18 N 1.30820 * 119.99439 * 15.74655 * 17 15 14 19 19 Si 1.86794 * 120.00091 * 195.74568 * 17 15 14 20 20 H 1.48500 * 109.47049 * 90.00242 * 19 17 15 21 21 H 1.48503 * 109.47311 * 209.99791 * 19 17 15 22 22 H 1.48494 * 109.47496 * 330.00230 * 19 17 15 23 23 C 1.37594 * 119.87507 * 90.00508 * 10 7 6 24 24 H 1.08999 * 109.47050 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47052 * 299.99708 * 1 2 3 26 26 H 1.08997 * 109.47240 * 59.99795 * 1 2 3 27 27 H 1.09005 * 109.47052 * 240.00292 * 2 1 3 28 28 H 1.08992 * 109.47367 * 119.99762 * 2 1 3 29 29 H 1.08004 * 119.99776 * 305.51324 * 3 2 1 30 30 H 1.07991 * 120.00173 * 187.20292 * 4 3 2 31 31 H 1.09007 * 109.47282 * 248.95991 * 5 4 3 32 32 H 1.09000 * 109.47662 * 8.96172 * 5 4 3 33 33 H 0.97003 * 119.99898 * 345.00387 * 6 5 4 34 34 H 1.08001 * 119.74745 * 0.02562 * 11 10 7 35 35 H 1.07999 * 119.88258 * 180.25801 * 12 11 10 36 36 H 1.08001 * 120.13049 * 179.70616 * 13 12 11 37 37 H 0.97001 * 119.99581 * 179.97438 * 18 17 15 38 38 H 1.08003 * 120.12975 * 359.97122 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8761 1.8173 0.9203 5 6 3.4698 0.8177 1.8790 6 7 4.9272 0.9648 1.8975 7 16 5.8142 0.2714 3.1120 8 8 7.1763 0.5619 2.8302 9 8 5.1782 0.6333 4.3301 10 6 5.6353 -1.4746 2.9568 11 6 4.6075 -2.1255 3.6221 12 6 4.4513 -3.4977 3.5047 13 6 5.3240 -4.2314 2.7335 14 6 6.3742 -3.5824 2.0586 15 6 7.2765 -4.3256 1.2631 16 1 8.3086 -4.0172 1.1858 17 6 6.8321 -5.4610 0.5760 18 7 5.5506 -5.6658 0.4111 19 14 8.0688 -6.6837 -0.1056 20 1 8.3554 -7.7206 0.9180 21 1 7.5090 -7.3290 -1.3204 22 1 9.3250 -5.9739 -0.4564 23 6 6.5196 -2.1879 2.1806 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5137 0.8899 29 1 1.7000 2.1110 -0.7614 30 1 3.1463 2.8605 0.9918 31 1 3.0741 0.9942 2.8793 32 1 3.2105 -0.1914 1.5587 33 1 5.3728 1.4684 1.1983 34 1 3.9205 -1.5582 4.2325 35 1 3.6447 -3.9939 4.0239 36 1 5.2034 -5.3012 2.6471 37 1 5.2426 -6.4525 -0.0655 38 1 7.3219 -1.6795 1.6665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590761341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:07 Heat of formation + Delta-G solvation = -51.122053 kcal Electronic energy + Delta-G solvation = -21355.925858 eV Core-core repulsion = 18097.016804 eV Total energy + Delta-G solvation = -3258.909054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -37.67857 -37.23860 -36.60054 -35.30775 -34.03074 -33.77684 -30.42573 -30.07833 -29.86141 -25.54779 -25.38706 -23.30133 -21.92965 -21.02084 -19.23115 -18.68033 -17.93507 -16.83433 -16.37803 -15.94454 -15.32897 -14.98499 -14.87317 -14.46937 -14.07501 -13.89375 -13.49630 -13.34786 -12.91836 -12.59722 -12.41710 -12.09257 -11.94171 -11.61604 -11.54266 -11.40229 -11.36335 -11.35549 -11.05061 -11.03609 -10.89785 -10.67989 -10.61969 -9.77218 -9.70703 -9.37562 -9.31054 -8.88044 -8.07860 -7.65059 -6.89915 -4.54544 1.00128 2.09057 2.17806 2.62023 3.01536 3.05165 3.06130 3.65350 3.85870 4.24618 4.45538 4.66208 4.94456 5.00523 5.10468 5.30157 5.33860 5.38331 5.53031 5.60121 5.77969 5.93246 5.99210 6.05120 6.09933 6.13371 6.19559 6.57005 6.62136 6.68528 6.73322 6.81780 7.04304 7.18819 7.26172 7.34649 7.65421 7.81105 7.90877 8.38973 8.66422 8.72305 10.09065 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013346 B = 0.005082 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.505661 B = 5508.659345 C = 6629.404405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C -0.138 4.138 4 C -0.170 4.170 5 C 0.139 3.861 6 N -1.117 6.117 7 S 2.690 3.310 8 O -0.972 6.972 9 O -0.976 6.976 10 C -0.635 4.635 11 C -0.143 4.143 12 C -0.122 4.122 13 C -0.109 4.109 14 C 0.097 3.903 15 C -0.471 4.471 16 H 0.083 0.917 17 C 0.077 3.923 18 N -0.802 5.802 19 Si 0.911 3.089 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.261 1.261 23 C -0.115 4.115 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.414 0.586 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.282 0.718 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.509 8.073 -2.072 11.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.157 4.157 4 C -0.189 4.189 5 C 0.013 3.987 6 N -0.875 5.875 7 S 2.786 3.214 8 O -0.963 6.963 9 O -0.966 6.966 10 C -0.727 4.727 11 C -0.164 4.164 12 C -0.141 4.141 13 C -0.129 4.129 14 C 0.093 3.907 15 C -0.501 4.501 16 H 0.101 0.899 17 C -0.140 4.140 18 N -0.428 5.428 19 Si 0.735 3.265 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.185 1.185 23 C -0.136 4.136 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.247 0.753 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.133 0.867 37 H 0.093 0.907 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.284 8.294 -1.398 11.127 hybrid contribution 0.341 -1.070 -1.116 1.583 sum -6.944 7.224 -2.514 10.330 Atomic orbital electron populations 1.21676 0.95034 1.01829 1.01631 1.20915 0.96137 0.94519 1.03774 1.22896 0.97902 0.97588 0.97311 1.22809 0.99353 0.99293 0.97486 1.20470 0.79105 0.99127 0.99977 1.55528 1.15736 1.69940 1.46299 1.01612 0.72428 0.74682 0.72686 1.93539 1.32846 1.85100 1.84807 1.93508 1.76972 1.83216 1.42868 1.29788 1.07533 1.22597 1.12796 1.20120 0.98341 0.95176 1.02776 1.20804 0.99246 0.93902 1.00167 1.21493 0.96562 0.99356 0.95496 1.17672 0.92174 0.90513 0.90311 1.19558 0.97303 1.08111 1.25102 0.89921 1.25862 0.95753 0.97730 0.94679 1.69764 1.14993 1.25876 1.32117 0.86265 0.81248 0.80324 0.78658 1.19236 1.20293 1.18501 1.20895 0.98461 0.94666 0.99600 0.92380 0.92682 0.92917 0.90759 0.89984 0.87057 0.86686 0.89904 0.90022 0.75268 0.87454 0.88272 0.86675 0.90708 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.89 37.16 0.37 -0.97 16 2 C -0.12 -1.27 6.04 -27.88 -0.17 -1.44 16 3 C -0.14 -1.42 9.51 -36.03 -0.34 -1.76 16 4 C -0.17 -1.87 9.65 -36.03 -0.35 -2.22 16 5 C 0.14 1.85 6.28 -5.20 -0.03 1.82 16 6 N -1.12 -16.36 5.99 -11.66 -0.07 -16.43 16 7 S 2.69 50.13 5.74 -107.50 -0.62 49.51 16 8 O -0.97 -20.37 17.27 -57.17 -0.99 -21.35 16 9 O -0.98 -19.69 16.73 -57.17 -0.96 -20.65 16 10 C -0.64 -13.67 5.94 -39.66 -0.24 -13.90 16 11 C -0.14 -3.02 9.53 -39.29 -0.37 -3.40 16 12 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 13 C -0.11 -2.67 8.65 -38.87 -0.34 -3.01 16 14 C 0.10 2.47 5.47 -106.82 -0.58 1.89 16 15 C -0.47 -12.07 9.02 -37.74 -0.34 -12.41 16 16 H 0.08 2.05 7.89 -52.48 -0.41 1.64 16 17 C 0.08 1.86 5.12 -17.34 -0.09 1.78 16 18 N -0.80 -19.86 11.44 55.55 0.64 -19.22 16 19 Si 0.91 18.16 29.59 -169.99 -5.03 13.13 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 23 C -0.11 -2.74 9.26 -38.87 -0.36 -3.10 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.98 5.27 -51.93 -0.27 0.71 16 29 H 0.11 0.96 8.06 -52.48 -0.42 0.54 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.08 1.09 7.75 -51.92 -0.40 0.69 16 32 H 0.08 1.14 5.33 -51.93 -0.28 0.86 16 33 H 0.41 5.16 8.64 -34.48 -0.30 4.86 16 34 H 0.11 2.03 7.59 -52.49 -0.40 1.63 16 35 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 36 H 0.12 2.86 6.74 -52.49 -0.35 2.50 16 37 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 38 H 0.11 2.60 7.60 -52.48 -0.40 2.20 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -29.90 334.33 -10.14 -40.04 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -4.91 Total: 9.72 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: -3.24 Total: -39.78 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.57 Total: -35.65 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -1.94 Total: -42.00 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 16 Polarization: 50.13 SS G_CDS: -0.62 Total: 49.51 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.90 -10.14 -40.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590761341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.084 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds