Wall clock time and date at job start Tue Mar 31 2020 06:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46914 * 2 1 4 4 C 1.31003 * 120.00356 * 125.78807 * 3 2 1 5 5 C 1.50697 * 119.99368 * 7.20254 * 4 3 2 6 6 N 1.46498 * 109.47126 * 128.95991 * 5 4 3 7 7 S 1.65606 * 120.00138 * 164.99523 * 6 5 4 8 8 O 1.42098 * 106.40098 * 178.54300 * 7 6 5 9 9 O 1.42093 * 106.40017 * 311.46210 * 7 6 5 10 10 C 1.76198 * 107.21385 * 65.00319 * 7 6 5 11 11 C 1.38655 * 119.87692 * 269.72505 * 10 7 6 12 12 C 1.38609 * 120.50485 * 179.72784 * 11 10 7 13 13 C 1.37645 * 120.24618 * 0.54631 * 12 11 10 14 14 C 1.40696 * 119.74054 * 359.73552 * 13 12 11 15 15 C 1.41396 * 120.24254 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00166 * 212.98509 * 15 14 13 17 17 C 1.39954 * 120.00196 * 32.98191 * 15 14 13 18 18 N 1.30820 * 119.99439 * 15.74655 * 17 15 14 19 19 Si 1.86794 * 120.00091 * 195.74568 * 17 15 14 20 20 H 1.48500 * 109.47049 * 90.00242 * 19 17 15 21 21 H 1.48503 * 109.47311 * 209.99791 * 19 17 15 22 22 H 1.48494 * 109.47496 * 330.00230 * 19 17 15 23 23 C 1.37594 * 119.87507 * 90.00508 * 10 7 6 24 24 H 1.08999 * 109.47050 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47052 * 299.99708 * 1 2 3 26 26 H 1.08997 * 109.47240 * 59.99795 * 1 2 3 27 27 H 1.09005 * 109.47052 * 240.00292 * 2 1 3 28 28 H 1.08992 * 109.47367 * 119.99762 * 2 1 3 29 29 H 1.08004 * 119.99776 * 305.51324 * 3 2 1 30 30 H 1.07991 * 120.00173 * 187.20292 * 4 3 2 31 31 H 1.09007 * 109.47282 * 248.95991 * 5 4 3 32 32 H 1.09000 * 109.47662 * 8.96172 * 5 4 3 33 33 H 0.97003 * 119.99898 * 345.00387 * 6 5 4 34 34 H 1.08001 * 119.74745 * 0.02562 * 11 10 7 35 35 H 1.07999 * 119.88258 * 180.25801 * 12 11 10 36 36 H 1.08001 * 120.13049 * 179.70616 * 13 12 11 37 37 H 0.97001 * 119.99581 * 179.97438 * 18 17 15 38 38 H 1.08003 * 120.12975 * 359.97122 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8761 1.8173 0.9203 5 6 3.4698 0.8177 1.8790 6 7 4.9272 0.9648 1.8975 7 16 5.8142 0.2714 3.1120 8 8 7.1763 0.5619 2.8302 9 8 5.1782 0.6333 4.3301 10 6 5.6353 -1.4746 2.9568 11 6 4.6075 -2.1255 3.6221 12 6 4.4513 -3.4977 3.5047 13 6 5.3240 -4.2314 2.7335 14 6 6.3742 -3.5824 2.0586 15 6 7.2765 -4.3256 1.2631 16 1 8.3086 -4.0172 1.1858 17 6 6.8321 -5.4610 0.5760 18 7 5.5506 -5.6658 0.4111 19 14 8.0688 -6.6837 -0.1056 20 1 8.3554 -7.7206 0.9180 21 1 7.5090 -7.3290 -1.3204 22 1 9.3250 -5.9739 -0.4564 23 6 6.5196 -2.1879 2.1806 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5137 0.8899 29 1 1.7000 2.1110 -0.7614 30 1 3.1463 2.8605 0.9918 31 1 3.0741 0.9942 2.8793 32 1 3.2105 -0.1914 1.5587 33 1 5.3728 1.4684 1.1983 34 1 3.9205 -1.5582 4.2325 35 1 3.6447 -3.9939 4.0239 36 1 5.2034 -5.3012 2.6471 37 1 5.2426 -6.4525 -0.0655 38 1 7.3219 -1.6795 1.6665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590761341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:07 Heat of formation + Delta-G solvation = -69.804010 kcal Electronic energy + Delta-G solvation = -21356.735969 eV Core-core repulsion = 18097.016804 eV Total energy + Delta-G solvation = -3259.719165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.46667 -38.40121 -38.00932 -36.92005 -35.60399 -35.08970 -31.90463 -31.64946 -31.30345 -27.32653 -26.50255 -24.13405 -23.68310 -22.81928 -20.66898 -19.80274 -19.56077 -18.27976 -17.72317 -17.46029 -16.88084 -16.58900 -16.38171 -15.75962 -15.31258 -15.05445 -14.94459 -14.81339 -14.31563 -14.00280 -13.71245 -13.47500 -13.31532 -13.18685 -13.07405 -13.02620 -12.90017 -12.83511 -12.64730 -12.50667 -12.22290 -11.84226 -11.60606 -11.53895 -11.35703 -11.12621 -10.51021 -9.91256 -9.82188 -9.49599 -8.70902 -6.46385 -0.51036 0.37445 0.83486 1.23705 1.37771 1.44879 1.50171 2.19162 2.22768 2.57600 2.78594 3.44115 3.49425 3.81669 4.09291 4.23821 4.28147 4.39544 4.43540 4.48286 4.58445 4.75318 4.80074 4.82926 4.86051 5.01315 5.07775 5.16452 5.21452 5.28208 5.39016 5.40418 5.53915 5.72215 5.83472 5.88069 5.94178 6.08990 6.15657 6.51400 6.80213 6.85100 8.30274 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013346 B = 0.005082 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.505661 B = 5508.659345 C = 6629.404405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C -0.128 4.128 4 C -0.177 4.177 5 C 0.129 3.871 6 N -1.102 6.102 7 S 2.721 3.279 8 O -0.995 6.995 9 O -0.985 6.985 10 C -0.642 4.642 11 C -0.139 4.139 12 C -0.122 4.122 13 C -0.129 4.129 14 C 0.068 3.932 15 C -0.509 4.509 16 H 0.076 0.924 17 C 0.041 3.959 18 N -0.830 5.830 19 Si 0.980 3.020 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.261 1.261 23 C -0.137 4.137 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.426 0.574 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.290 0.710 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.595 9.048 -2.436 12.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C -0.147 4.147 4 C -0.197 4.197 5 C 0.005 3.995 6 N -0.864 5.864 7 S 2.814 3.186 8 O -0.986 6.986 9 O -0.975 6.975 10 C -0.731 4.731 11 C -0.160 4.160 12 C -0.141 4.141 13 C -0.149 4.149 14 C 0.065 3.935 15 C -0.539 4.539 16 H 0.094 0.906 17 C -0.174 4.174 18 N -0.456 5.456 19 Si 0.801 3.199 20 H -0.187 1.187 21 H -0.191 1.191 22 H -0.185 1.185 23 C -0.158 4.158 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.262 0.738 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.375 9.249 -1.758 12.600 hybrid contribution 0.551 -1.263 -0.969 1.685 sum -7.823 7.986 -2.727 11.507 Atomic orbital electron populations 1.21657 0.93699 1.02019 1.02508 1.20974 0.97416 0.95021 1.02725 1.23076 0.97111 0.97343 0.97220 1.22790 0.99954 0.99600 0.97316 1.20659 0.77954 0.99803 1.01123 1.55190 1.16353 1.68954 1.45921 1.00719 0.71846 0.73206 0.72864 1.93503 1.34829 1.84913 1.85312 1.93492 1.77148 1.82765 1.44086 1.30283 1.06575 1.24811 1.11409 1.20529 0.98222 0.95169 1.02044 1.21150 0.99269 0.94395 0.99323 1.21496 0.97502 0.99071 0.96833 1.18009 0.92996 0.91538 0.91005 1.19772 0.97294 1.10010 1.26837 0.90560 1.26632 0.97555 0.98769 0.94458 1.69799 1.16490 1.26652 1.32692 0.85222 0.78629 0.77754 0.78261 1.18661 1.19118 1.18486 1.20956 0.99425 0.94417 1.00991 0.92609 0.92231 0.91590 0.91465 0.91462 0.84725 0.84770 0.89518 0.90802 0.73760 0.84689 0.85209 0.87889 0.89939 0.87204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.89 71.98 0.71 -1.66 16 2 C -0.12 -2.55 6.04 29.85 0.18 -2.37 16 3 C -0.13 -2.32 9.51 25.64 0.24 -2.07 16 4 C -0.18 -3.44 9.65 25.64 0.25 -3.20 16 5 C 0.13 3.23 6.28 85.63 0.54 3.77 16 6 N -1.10 -30.54 5.99 -190.79 -1.14 -31.68 16 7 S 2.72 98.58 5.74 -56.49 -0.32 98.26 16 8 O -1.00 -41.19 17.27 -128.00 -2.21 -43.40 16 9 O -0.98 -37.96 16.73 -128.00 -2.14 -40.11 16 10 C -0.64 -27.50 5.94 22.22 0.13 -27.37 16 11 C -0.14 -5.72 9.53 22.46 0.21 -5.51 16 12 C -0.12 -5.28 10.02 22.22 0.22 -5.06 16 13 C -0.13 -6.47 8.65 22.73 0.20 -6.27 16 14 C 0.07 3.58 5.47 -21.29 -0.12 3.46 16 15 C -0.51 -27.12 9.02 23.46 0.21 -26.91 16 16 H 0.08 3.98 7.89 -2.91 -0.02 3.96 16 17 C 0.04 2.00 5.12 85.26 0.44 2.44 16 18 N -0.83 -41.93 11.44 21.83 0.25 -41.68 16 19 Si 0.98 37.59 29.59 68.60 2.03 39.62 16 20 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 21 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 22 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 23 C -0.14 -6.71 9.26 22.73 0.21 -6.50 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.07 1.57 5.27 -2.39 -0.01 1.56 16 29 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.13 2.12 8.06 -2.92 -0.02 2.09 16 31 H 0.09 2.10 7.75 -2.38 -0.02 2.08 16 32 H 0.07 1.98 5.33 -2.39 -0.01 1.97 16 33 H 0.43 9.87 8.64 -96.74 -0.84 9.03 16 34 H 0.14 4.77 7.59 -2.91 -0.02 4.75 16 35 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 36 H 0.10 5.29 6.74 -2.91 -0.02 5.28 16 37 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 38 H 0.11 5.27 7.60 -2.91 -0.02 5.25 16 Total: -1.00 -64.45 334.33 0.13 -64.32 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.24 Total: 31.93 kcal Atomic # 6 Polarization: -80.69 SS G_CDS: 3.43 Total: -77.26 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -0.89 Total: -73.36 kcal Atomic # 8 Polarization: -79.16 SS G_CDS: -4.35 Total: -83.51 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Atomic # 16 Polarization: 98.58 SS G_CDS: -0.32 Total: 98.26 kcal Total: -64.45 0.13 -64.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590761341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.486 kcal (2) G-P(sol) polarization free energy of solvation -64.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds