Wall clock time and date at job start Tue Mar 31 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50689 * 109.47031 * 2 1 4 4 C 1.30999 * 120.00130 * 125.27676 * 3 2 1 5 5 C 1.50702 * 120.00281 * 179.72038 * 4 3 2 6 6 N 1.46501 * 109.47284 * 124.99639 * 5 4 3 7 7 S 1.65602 * 120.00101 * 165.00269 * 6 5 4 8 8 O 1.42102 * 106.39942 * 178.54477 * 7 6 5 9 9 O 1.42099 * 106.40090 * 311.45923 * 7 6 5 10 10 C 1.76196 * 107.21836 * 65.00244 * 7 6 5 11 11 C 1.38660 * 119.87552 * 269.72654 * 10 7 6 12 12 C 1.38608 * 120.50054 * 179.71968 * 11 10 7 13 13 C 1.37644 * 120.24643 * 0.55759 * 12 11 10 14 14 C 1.40691 * 119.74798 * 359.71797 * 13 12 11 15 15 C 1.41396 * 120.24795 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00198 * 150.22316 * 15 14 13 17 17 C 1.39942 * 119.99696 * 330.21984 * 15 14 13 18 18 N 1.30831 * 119.99823 * 161.72450 * 17 15 14 19 19 Si 1.86806 * 120.00461 * 341.72880 * 17 15 14 20 20 H 1.48501 * 109.47222 * 95.40850 * 19 17 15 21 21 H 1.48493 * 109.46929 * 215.41079 * 19 17 15 22 22 H 1.48498 * 109.46608 * 335.40928 * 19 17 15 23 23 C 1.37598 * 119.87762 * 89.99996 * 10 7 6 24 24 H 1.08998 * 109.47042 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47055 * 300.00315 * 1 2 3 26 26 H 1.08993 * 109.47045 * 60.00244 * 1 2 3 27 27 H 1.08999 * 109.47191 * 239.99179 * 2 1 3 28 28 H 1.09003 * 109.46938 * 119.99815 * 2 1 3 29 29 H 1.07998 * 120.00504 * 304.99469 * 3 2 1 30 30 H 1.08000 * 119.99967 * 359.72193 * 4 3 2 31 31 H 1.08994 * 109.47549 * 244.99807 * 5 4 3 32 32 H 1.09003 * 109.46819 * 4.99886 * 5 4 3 33 33 H 0.97001 * 120.00054 * 345.00129 * 6 5 4 34 34 H 1.08003 * 119.74492 * 0.02562 * 11 10 7 35 35 H 1.07997 * 119.88103 * 180.25576 * 12 11 10 36 36 H 1.08003 * 120.12412 * 179.74535 * 13 12 11 37 37 H 0.96993 * 119.99609 * 180.02562 * 18 17 15 38 38 H 1.08004 * 120.12462 * 359.97438 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8684 1.8199 0.9262 5 6 3.3756 3.2390 0.9225 6 7 3.0991 3.8598 2.2203 7 16 3.8586 5.2695 2.6425 8 8 3.3588 5.6263 3.9240 9 8 5.2405 5.0770 2.3733 10 6 3.3031 6.5155 1.5273 11 6 3.9938 6.7435 0.3468 12 6 3.5650 7.7163 -0.5425 13 6 2.4530 8.4754 -0.2565 14 6 1.7476 8.2567 0.9410 15 6 0.6036 9.0300 1.2451 16 1 -0.1898 8.6081 1.8443 17 6 0.4994 10.3421 0.7698 18 7 -0.6672 10.9332 0.7313 19 14 2.0258 11.2497 0.1902 20 1 2.1541 11.1122 -1.2828 21 1 1.9117 12.6871 0.5452 22 1 3.2251 10.6712 0.8477 23 6 2.1889 7.2623 1.8337 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5140 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.7067 2.1087 -0.7662 30 1 3.1942 1.1320 1.6923 31 1 4.4503 3.2403 0.7408 32 1 2.8735 3.8023 0.1359 33 1 2.4711 3.4451 2.8324 34 1 4.8698 6.1552 0.1163 35 1 4.1082 7.8827 -1.4610 36 1 2.1230 9.2357 -0.9490 37 1 -0.7394 11.8425 0.4015 38 1 1.6547 7.0858 2.7557 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590761342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:09 Heat of formation + Delta-G solvation = -55.642886 kcal Electronic energy + Delta-G solvation = -21030.957980 eV Core-core repulsion = 17771.852887 eV Total energy + Delta-G solvation = -3259.105092 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -37.94623 -37.02755 -36.64820 -35.40517 -34.48510 -33.80009 -30.75023 -30.67824 -30.18482 -25.78260 -25.39397 -22.47132 -22.35201 -20.93068 -19.98006 -19.13166 -18.05636 -17.12011 -16.34812 -16.19862 -15.41569 -14.98122 -14.87399 -14.75157 -14.29252 -13.86374 -13.56614 -13.36169 -13.18692 -12.89605 -12.33987 -12.22887 -12.09602 -11.89041 -11.83610 -11.70342 -11.63744 -11.48329 -11.23082 -11.05970 -10.86687 -10.81266 -10.37433 -10.04210 -9.82963 -9.58687 -9.28666 -9.05917 -8.30102 -7.90344 -7.10683 -4.66277 0.87092 1.88254 2.03769 2.39241 2.97796 3.10279 3.19457 3.52125 3.83964 4.09189 4.31076 4.50649 4.80883 4.90329 5.04887 5.10945 5.13811 5.18662 5.38331 5.55109 5.67453 5.69454 5.78501 5.80020 5.97869 5.99045 6.01509 6.17914 6.43615 6.49777 6.55797 6.62306 6.84268 7.03334 7.16126 7.17332 7.36641 7.59556 7.75255 8.16003 8.40239 8.59432 9.91182 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.004350 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.832947 B = 6435.843337 C = 7227.570678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.142 4.142 4 C -0.167 4.167 5 C 0.148 3.852 6 N -1.118 6.118 7 S 2.690 3.310 8 O -0.968 6.968 9 O -0.972 6.972 10 C -0.625 4.625 11 C -0.159 4.159 12 C -0.092 4.092 13 C -0.198 4.198 14 C 0.073 3.927 15 C -0.443 4.443 16 H 0.095 0.905 17 C 0.084 3.916 18 N -0.800 5.800 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.243 1.243 23 C -0.102 4.102 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.415 0.585 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.288 0.712 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.707 -15.034 -2.808 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.161 4.161 4 C -0.187 4.187 5 C 0.022 3.978 6 N -0.876 5.876 7 S 2.785 3.215 8 O -0.959 6.959 9 O -0.962 6.962 10 C -0.716 4.716 11 C -0.180 4.180 12 C -0.111 4.111 13 C -0.218 4.218 14 C 0.069 3.931 15 C -0.471 4.471 16 H 0.113 0.887 17 C -0.136 4.136 18 N -0.423 5.423 19 Si 0.732 3.268 20 H -0.194 1.194 21 H -0.213 1.213 22 H -0.166 1.166 23 C -0.123 4.123 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.249 0.751 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.233 -14.646 -2.247 15.410 hybrid contribution -0.252 0.779 -0.731 1.097 sum 3.982 -13.867 -2.978 14.731 Atomic orbital electron populations 1.21722 0.94991 1.01585 1.02389 1.20664 0.96301 0.94154 1.02302 1.23012 0.96642 0.97461 0.98975 1.22880 0.99393 0.96405 0.99998 1.20301 1.01272 0.91466 0.84745 1.55554 1.62441 1.42220 1.27364 1.01677 0.73419 0.72778 0.73614 1.93557 1.81063 1.82828 1.38437 1.93518 1.31174 1.85581 1.85933 1.29954 1.08847 1.19059 1.13770 1.20074 1.00644 1.02651 0.94667 1.20705 0.96301 0.96096 0.98038 1.21306 0.99645 1.02905 0.97908 1.17791 0.92136 0.92633 0.90528 1.19522 1.02320 0.96984 1.28321 0.88671 1.26160 0.97430 0.98099 0.91895 1.69679 1.25078 1.14271 1.33290 0.86374 0.83095 0.77649 0.79676 1.19417 1.21294 1.16623 1.20859 0.94693 0.98346 0.98378 0.92667 0.92423 0.92448 0.91062 0.91592 0.86800 0.86777 0.89624 0.90979 0.75118 0.87021 0.87885 0.87612 0.90165 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.90 37.16 0.37 -0.75 16 2 C -0.10 -0.74 6.38 -27.88 -0.18 -0.92 16 3 C -0.14 -1.31 9.12 -36.03 -0.33 -1.63 16 4 C -0.17 -1.66 9.26 -36.02 -0.33 -1.99 16 5 C 0.15 1.77 6.66 -5.19 -0.03 1.74 16 6 N -1.12 -15.06 5.99 -11.66 -0.07 -15.13 16 7 S 2.69 47.65 5.74 -107.50 -0.62 47.03 16 8 O -0.97 -19.57 17.27 -57.17 -0.99 -20.56 16 9 O -0.97 -18.79 16.73 -57.17 -0.96 -19.75 16 10 C -0.63 -12.81 5.94 -39.66 -0.24 -13.04 16 11 C -0.16 -3.19 9.53 -39.29 -0.37 -3.56 16 12 C -0.09 -1.90 10.02 -39.66 -0.40 -2.30 16 13 C -0.20 -4.57 7.18 -38.87 -0.28 -4.85 16 14 C 0.07 1.80 5.10 -106.83 -0.55 1.26 16 15 C -0.44 -11.61 9.57 -37.74 -0.36 -11.98 16 16 H 0.10 2.59 8.06 -52.49 -0.42 2.16 16 17 C 0.08 2.14 5.40 -17.34 -0.09 2.04 16 18 N -0.80 -20.61 13.93 55.55 0.77 -19.84 16 19 Si 0.91 20.09 24.52 -169.99 -4.17 15.93 16 20 H -0.27 -5.68 6.71 56.52 0.38 -5.30 16 21 H -0.29 -6.12 7.11 56.52 0.40 -5.71 16 22 H -0.24 -5.59 6.86 56.52 0.39 -5.20 16 23 C -0.10 -2.33 9.26 -38.87 -0.36 -2.69 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.47 7.79 -51.93 -0.40 0.07 16 29 H 0.11 1.06 7.84 -52.49 -0.41 0.65 16 30 H 0.11 1.01 7.84 -52.49 -0.41 0.60 16 31 H 0.09 1.01 7.75 -51.93 -0.40 0.61 16 32 H 0.07 0.87 7.79 -51.93 -0.40 0.47 16 33 H 0.42 4.74 8.64 -34.47 -0.30 4.45 16 34 H 0.11 1.98 7.59 -52.48 -0.40 1.58 16 35 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.11 2.40 4.73 -52.48 -0.25 2.15 16 37 H 0.29 6.69 8.30 -40.82 -0.34 6.35 16 38 H 0.12 2.63 7.60 -52.48 -0.40 2.23 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -30.22 332.75 -9.25 -39.47 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.09 Total: 6.51 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: -3.15 Total: -38.67 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.70 Total: -34.98 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -1.94 Total: -40.31 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.17 Total: 15.93 kcal Atomic # 16 Polarization: 47.65 SS G_CDS: -0.62 Total: 47.03 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.22 -9.25 -39.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590761342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.170 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds