Wall clock time and date at job start Tue Mar 31 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50689 * 109.47031 * 2 1 4 4 C 1.30999 * 120.00130 * 125.27676 * 3 2 1 5 5 C 1.50702 * 120.00281 * 179.72038 * 4 3 2 6 6 N 1.46501 * 109.47284 * 124.99639 * 5 4 3 7 7 S 1.65602 * 120.00101 * 165.00269 * 6 5 4 8 8 O 1.42102 * 106.39942 * 178.54477 * 7 6 5 9 9 O 1.42099 * 106.40090 * 311.45923 * 7 6 5 10 10 C 1.76196 * 107.21836 * 65.00244 * 7 6 5 11 11 C 1.38660 * 119.87552 * 269.72654 * 10 7 6 12 12 C 1.38608 * 120.50054 * 179.71968 * 11 10 7 13 13 C 1.37644 * 120.24643 * 0.55759 * 12 11 10 14 14 C 1.40691 * 119.74798 * 359.71797 * 13 12 11 15 15 C 1.41396 * 120.24795 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00198 * 150.22316 * 15 14 13 17 17 C 1.39942 * 119.99696 * 330.21984 * 15 14 13 18 18 N 1.30831 * 119.99823 * 161.72450 * 17 15 14 19 19 Si 1.86806 * 120.00461 * 341.72880 * 17 15 14 20 20 H 1.48501 * 109.47222 * 95.40850 * 19 17 15 21 21 H 1.48493 * 109.46929 * 215.41079 * 19 17 15 22 22 H 1.48498 * 109.46608 * 335.40928 * 19 17 15 23 23 C 1.37598 * 119.87762 * 89.99996 * 10 7 6 24 24 H 1.08998 * 109.47042 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47055 * 300.00315 * 1 2 3 26 26 H 1.08993 * 109.47045 * 60.00244 * 1 2 3 27 27 H 1.08999 * 109.47191 * 239.99179 * 2 1 3 28 28 H 1.09003 * 109.46938 * 119.99815 * 2 1 3 29 29 H 1.07998 * 120.00504 * 304.99469 * 3 2 1 30 30 H 1.08000 * 119.99967 * 359.72193 * 4 3 2 31 31 H 1.08994 * 109.47549 * 244.99807 * 5 4 3 32 32 H 1.09003 * 109.46819 * 4.99886 * 5 4 3 33 33 H 0.97001 * 120.00054 * 345.00129 * 6 5 4 34 34 H 1.08003 * 119.74492 * 0.02562 * 11 10 7 35 35 H 1.07997 * 119.88103 * 180.25576 * 12 11 10 36 36 H 1.08003 * 120.12412 * 179.74535 * 13 12 11 37 37 H 0.96993 * 119.99609 * 180.02562 * 18 17 15 38 38 H 1.08004 * 120.12462 * 359.97438 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8684 1.8199 0.9262 5 6 3.3756 3.2390 0.9225 6 7 3.0991 3.8598 2.2203 7 16 3.8586 5.2695 2.6425 8 8 3.3588 5.6263 3.9240 9 8 5.2405 5.0770 2.3733 10 6 3.3031 6.5155 1.5273 11 6 3.9938 6.7435 0.3468 12 6 3.5650 7.7163 -0.5425 13 6 2.4530 8.4754 -0.2565 14 6 1.7476 8.2567 0.9410 15 6 0.6036 9.0300 1.2451 16 1 -0.1898 8.6081 1.8443 17 6 0.4994 10.3421 0.7698 18 7 -0.6672 10.9332 0.7313 19 14 2.0258 11.2497 0.1902 20 1 2.1541 11.1122 -1.2828 21 1 1.9117 12.6871 0.5452 22 1 3.2251 10.6712 0.8477 23 6 2.1889 7.2623 1.8337 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5140 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.7067 2.1087 -0.7662 30 1 3.1942 1.1320 1.6923 31 1 4.4503 3.2403 0.7408 32 1 2.8735 3.8023 0.1359 33 1 2.4711 3.4451 2.8324 34 1 4.8698 6.1552 0.1163 35 1 4.1082 7.8827 -1.4610 36 1 2.1230 9.2357 -0.9490 37 1 -0.7394 11.8425 0.4015 38 1 1.6547 7.0858 2.7557 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590761342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:09 Heat of formation + Delta-G solvation = -75.961603 kcal Electronic energy + Delta-G solvation = -21031.839065 eV Core-core repulsion = 17771.852887 eV Total energy + Delta-G solvation = -3259.986178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.69534 -38.35003 -37.70962 -36.93986 -35.65153 -35.36456 -32.55046 -31.89814 -31.47162 -27.26458 -26.62240 -24.11412 -23.13389 -22.67769 -20.93831 -20.42051 -19.68134 -18.48787 -18.07090 -17.44743 -17.03622 -16.64884 -16.13949 -15.72370 -15.53120 -15.15468 -14.83055 -14.69073 -14.42161 -14.22572 -14.02917 -13.58643 -13.39655 -13.26653 -13.19035 -13.09303 -12.91149 -12.80939 -12.74776 -12.55246 -12.05274 -11.83038 -11.80399 -11.63955 -11.56111 -11.10047 -10.61020 -10.03648 -9.91062 -9.69882 -8.98005 -6.60885 -0.56493 0.17106 0.63978 1.19899 1.24083 1.35229 1.42386 2.03490 2.17379 2.41880 2.74873 3.29038 3.41512 3.80377 4.10119 4.17283 4.29432 4.32752 4.41202 4.43443 4.52058 4.62100 4.71255 4.75240 4.79625 4.87627 5.05469 5.06906 5.12688 5.20924 5.33238 5.40592 5.42591 5.61850 5.75058 5.77619 5.85967 5.98103 6.12812 6.23073 6.56995 6.68375 8.10295 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.004350 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.832947 B = 6435.843337 C = 7227.570678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.136 4.136 4 C -0.175 4.175 5 C 0.139 3.861 6 N -1.103 6.103 7 S 2.719 3.281 8 O -0.995 6.995 9 O -0.981 6.981 10 C -0.633 4.633 11 C -0.142 4.142 12 C -0.095 4.095 13 C -0.205 4.205 14 C 0.054 3.946 15 C -0.485 4.485 16 H 0.061 0.939 17 C 0.050 3.950 18 N -0.841 5.841 19 Si 0.956 3.044 20 H -0.247 1.247 21 H -0.274 1.274 22 H -0.256 1.256 23 C -0.123 4.123 24 H 0.066 0.934 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.426 0.574 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.109 0.891 37 H 0.296 0.704 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 -16.802 -4.275 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.134 4.134 3 C -0.156 4.156 4 C -0.194 4.194 5 C 0.014 3.986 6 N -0.865 5.865 7 S 2.811 3.189 8 O -0.985 6.985 9 O -0.971 6.971 10 C -0.721 4.721 11 C -0.163 4.163 12 C -0.114 4.114 13 C -0.224 4.224 14 C 0.051 3.949 15 C -0.514 4.514 16 H 0.079 0.921 17 C -0.166 4.166 18 N -0.467 5.467 19 Si 0.779 3.221 20 H -0.172 1.172 21 H -0.200 1.200 22 H -0.180 1.180 23 C -0.144 4.144 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.145 0.855 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.263 0.737 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.535 -16.398 -3.733 18.042 hybrid contribution -0.866 1.053 -0.297 1.395 sum 5.669 -15.345 -4.030 16.848 Atomic orbital electron populations 1.21731 0.95002 1.02234 1.01832 1.20700 0.96212 0.93208 1.03251 1.23189 0.95693 0.98316 0.98395 1.22812 1.00209 0.95395 1.00995 1.20527 1.01894 0.92661 0.83501 1.55232 1.62429 1.40377 1.28456 1.00839 0.73016 0.72690 0.72361 1.93521 1.81468 1.83661 1.39879 1.93505 1.31884 1.85783 1.85894 1.30449 1.07601 1.19472 1.14596 1.20642 1.00543 1.01515 0.93582 1.21179 0.95480 0.95100 0.99629 1.21508 1.00268 1.03404 0.97256 1.17942 0.92163 0.93135 0.91659 1.19492 1.03019 0.98507 1.30382 0.92085 1.26791 0.99729 0.98175 0.91880 1.69703 1.26470 1.15160 1.35351 0.85627 0.79256 0.76997 0.80262 1.17175 1.20017 1.18014 1.20897 0.96016 0.99101 0.98404 0.91476 0.93279 0.92725 0.89927 0.90823 0.87105 0.85465 0.89006 0.91096 0.73725 0.83736 0.83761 0.87323 0.89305 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.90 71.98 0.71 -1.27 16 2 C -0.10 -1.24 6.38 29.85 0.19 -1.05 16 3 C -0.14 -2.20 9.12 25.64 0.23 -1.97 16 4 C -0.17 -3.00 9.26 25.65 0.24 -2.76 16 5 C 0.14 2.97 6.66 85.63 0.57 3.54 16 6 N -1.10 -27.43 5.99 -190.79 -1.14 -28.57 16 7 S 2.72 91.51 5.74 -56.49 -0.32 91.19 16 8 O -0.99 -39.55 17.27 -128.00 -2.21 -41.76 16 9 O -0.98 -35.14 16.73 -128.00 -2.14 -37.28 16 10 C -0.63 -24.98 5.94 22.22 0.13 -24.85 16 11 C -0.14 -5.21 9.53 22.46 0.21 -5.00 16 12 C -0.10 -3.60 10.02 22.22 0.22 -3.37 16 13 C -0.20 -9.19 7.18 22.73 0.16 -9.03 16 14 C 0.05 2.73 5.10 -21.29 -0.11 2.62 16 15 C -0.48 -26.82 9.57 23.46 0.22 -26.60 16 16 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 17 C 0.05 2.62 5.40 85.25 0.46 3.08 16 18 N -0.84 -45.13 13.93 21.83 0.30 -44.82 16 19 Si 0.96 41.27 24.52 68.60 1.68 42.95 16 20 H -0.25 -9.73 6.71 99.48 0.67 -9.06 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.26 -11.47 6.86 99.48 0.68 -10.79 16 23 C -0.12 -5.72 9.26 22.73 0.21 -5.51 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.85 7.79 -2.39 -0.02 0.83 16 29 H 0.11 1.84 7.84 -2.91 -0.02 1.82 16 30 H 0.13 1.87 7.84 -2.91 -0.02 1.84 16 31 H 0.09 1.87 7.75 -2.39 -0.02 1.85 16 32 H 0.07 1.54 7.79 -2.39 -0.02 1.52 16 33 H 0.43 8.94 8.64 -96.74 -0.84 8.10 16 34 H 0.14 4.39 7.59 -2.91 -0.02 4.36 16 35 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 36 H 0.11 4.76 4.73 -2.91 -0.01 4.75 16 37 H 0.30 14.19 8.30 -92.71 -0.77 13.43 16 38 H 0.11 5.24 7.60 -2.91 -0.02 5.21 16 Total: -1.00 -65.99 332.75 -0.20 -66.19 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.17 Total: 24.27 kcal Atomic # 6 Polarization: -75.63 SS G_CDS: 3.46 Total: -72.17 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -0.84 Total: -73.39 kcal Atomic # 8 Polarization: -74.69 SS G_CDS: -4.35 Total: -79.04 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.68 Total: 42.95 kcal Atomic # 16 Polarization: 91.51 SS G_CDS: -0.32 Total: 91.19 kcal Total: -65.99 -0.20 -66.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590761342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.771 kcal (2) G-P(sol) polarization free energy of solvation -65.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds