Wall clock time and date at job start Tue Mar 31 2020 06:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00279 * 2 1 4 4 C 1.53010 * 109.47261 * 94.99345 * 3 2 1 5 5 C 1.50704 * 119.99804 * 179.97438 * 2 1 3 6 6 N 1.46500 * 109.47165 * 95.00431 * 5 2 1 7 7 S 1.65599 * 120.00214 * 164.99918 * 6 5 2 8 8 O 1.42099 * 106.39938 * 311.46446 * 7 6 5 9 9 O 1.42092 * 106.40136 * 178.53974 * 7 6 5 10 10 C 1.76199 * 107.21588 * 64.99779 * 7 6 5 11 11 C 1.38649 * 119.87924 * 270.25539 * 10 7 6 12 12 C 1.38617 * 120.50384 * 180.30415 * 11 10 7 13 13 C 1.37641 * 120.24556 * 359.44340 * 12 11 10 14 14 C 1.40700 * 119.74456 * 0.27362 * 13 12 11 15 15 C 1.41393 * 120.24808 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00329 * 204.39358 * 15 14 13 17 17 C 1.39942 * 119.99793 * 24.38823 * 15 14 13 18 18 N 1.30830 * 119.99921 * 17.86190 * 17 15 14 19 19 Si 1.86807 * 120.00314 * 197.85679 * 17 15 14 20 20 H 1.48504 * 109.46564 * 60.00381 * 19 17 15 21 21 H 1.48498 * 109.47182 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46916 * 300.00498 * 19 17 15 23 23 C 1.37604 * 119.87027 * 90.00133 * 10 7 6 24 24 H 1.08004 * 119.99708 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.00422 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47164 * 214.99329 * 3 2 1 27 27 H 1.08996 * 109.47332 * 334.99848 * 3 2 1 28 28 H 1.09000 * 109.46985 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.46764 * 300.00544 * 4 3 2 30 30 H 1.08996 * 109.46537 * 60.00015 * 4 3 2 31 31 H 1.08994 * 109.47024 * 335.00529 * 5 2 1 32 32 H 1.09001 * 109.46894 * 215.00798 * 5 2 1 33 33 H 0.96998 * 119.99788 * 345.00037 * 6 5 2 34 34 H 1.08005 * 119.75337 * 0.03997 * 11 10 7 35 35 H 1.07992 * 119.88323 * 179.71839 * 12 11 10 36 36 H 1.07998 * 120.13267 * 180.25377 * 13 12 11 37 37 H 0.97008 * 119.99884 * 179.97438 * 18 17 15 38 38 H 1.07994 * 120.13007 * 0.02562 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.4274 1.6840 1.4371 5 6 2.0635 -1.3052 0.0006 6 7 2.4120 -1.6685 -1.3752 7 16 3.5473 -2.8399 -1.6600 8 8 4.6650 -2.5227 -0.8419 9 8 3.6323 -2.9815 -3.0713 10 6 2.8960 -4.3576 -1.0459 11 6 3.1330 -4.7293 0.2686 12 6 2.6322 -5.9233 0.7634 13 6 1.8831 -6.7486 -0.0442 14 6 1.6313 -6.3789 -1.3782 15 6 0.8635 -7.2189 -2.2173 16 1 0.9851 -7.1682 -3.2892 17 6 -0.0539 -8.1160 -1.6588 18 7 -0.4625 -7.9516 -0.4269 19 14 -0.6952 -9.5482 -2.6723 20 1 0.4415 -10.4092 -3.0871 21 1 -1.6479 -10.3440 -1.8573 22 1 -1.3893 -9.0296 -3.8783 23 6 2.1497 -5.1670 -1.8714 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 2.9743 1.1987 -0.5893 27 1 1.4387 2.0854 -0.4343 28 1 2.9728 2.6277 1.4370 29 1 1.5166 1.7902 2.0264 30 1 3.0522 0.9036 1.8714 31 1 1.4385 -2.0853 0.4351 32 1 2.9741 -1.1987 0.5901 33 1 1.9777 -1.2228 -2.1193 34 1 3.7159 -4.0856 0.9109 35 1 2.8267 -6.2051 1.7876 36 1 1.4903 -7.6766 0.3444 37 1 -1.0987 -8.5733 -0.0399 38 1 1.9632 -4.8738 -2.8939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590764996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:14 Heat of formation + Delta-G solvation = -73.719372 kcal Electronic energy + Delta-G solvation = -21324.456747 eV Core-core repulsion = 18064.567800 eV Total energy + Delta-G solvation = -3259.888948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.45433 -38.48304 -38.10225 -36.92009 -35.67808 -34.68397 -31.92049 -31.59182 -31.13450 -27.36392 -26.74593 -24.35449 -23.67113 -22.80914 -20.67092 -19.77833 -19.59975 -18.33357 -17.72756 -17.26932 -16.84035 -16.56463 -16.09577 -15.84250 -15.46595 -15.17515 -15.05341 -14.31239 -14.20611 -13.91806 -13.77195 -13.59737 -13.31416 -13.17488 -13.09376 -13.04324 -12.97480 -12.82609 -12.63030 -12.58507 -12.21901 -11.71322 -11.60432 -11.57315 -11.36532 -11.14510 -10.47327 -10.13942 -9.84972 -9.57033 -8.74015 -6.46107 -0.51627 0.39633 0.84092 1.22214 1.36949 1.46116 1.49804 2.17011 2.24215 2.55139 2.78339 3.45364 3.52044 3.78342 3.91603 4.29102 4.39096 4.40520 4.45015 4.55922 4.61934 4.81678 4.83702 4.88742 4.89965 5.00698 5.06693 5.15219 5.19045 5.21094 5.40336 5.43804 5.55768 5.69814 5.87970 5.90316 5.93099 6.08747 6.11455 6.51627 6.78806 6.83795 8.23663 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.004187 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.763717 B = 6686.245344 C = 7085.746130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.142 4.142 3 C -0.090 4.090 4 C -0.148 4.148 5 C 0.146 3.854 6 N -1.101 6.101 7 S 2.720 3.280 8 O -0.985 6.985 9 O -0.996 6.996 10 C -0.638 4.638 11 C -0.149 4.149 12 C -0.122 4.122 13 C -0.141 4.141 14 C 0.063 3.937 15 C -0.500 4.500 16 H 0.078 0.922 17 C 0.039 3.961 18 N -0.820 5.820 19 Si 0.982 3.018 20 H -0.262 1.262 21 H -0.264 1.264 22 H -0.260 1.260 23 C -0.147 4.147 24 H 0.122 0.878 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.425 0.575 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.292 0.708 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.562 12.962 3.348 13.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C -0.128 4.128 4 C -0.205 4.205 5 C 0.021 3.979 6 N -0.863 5.863 7 S 2.813 3.187 8 O -0.975 6.975 9 O -0.986 6.986 10 C -0.727 4.727 11 C -0.169 4.169 12 C -0.141 4.141 13 C -0.161 4.161 14 C 0.060 3.940 15 C -0.529 4.529 16 H 0.096 0.904 17 C -0.176 4.176 18 N -0.445 5.445 19 Si 0.803 3.197 20 H -0.186 1.186 21 H -0.188 1.188 22 H -0.184 1.184 23 C -0.168 4.168 24 H 0.140 0.860 25 H 0.113 0.887 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.261 0.739 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.197 12.915 3.292 13.329 hybrid contribution -1.097 -1.259 -0.361 1.708 sum -0.900 11.656 2.931 12.053 Atomic orbital electron populations 1.24046 0.94961 1.03033 0.97794 1.21701 0.95493 0.94599 1.02541 1.20649 1.00138 0.93608 0.98369 1.21757 1.01800 1.01557 0.95427 1.20418 1.00466 0.95589 0.81445 1.55258 1.61953 1.54616 1.14484 1.00748 0.73092 0.72891 0.71964 1.93491 1.49469 1.83946 1.70578 1.93499 1.86627 1.86983 1.31500 1.30243 1.15807 1.22110 1.04515 1.20477 1.03867 0.99176 0.93422 1.21152 0.98254 0.95196 0.99499 1.21648 0.99307 0.99974 0.95164 1.18038 0.91281 0.91279 0.93444 1.19844 1.19508 1.18497 0.95057 0.90375 1.26722 0.94644 0.99943 0.96336 1.69807 1.24498 1.34462 1.15783 0.85243 0.78580 0.77060 0.78843 1.18630 1.18819 1.18385 1.20863 1.02111 0.95285 0.98516 0.85983 0.88660 0.91565 0.89775 0.91444 0.92117 0.93166 0.91403 0.89639 0.73872 0.84950 0.85459 0.86861 0.89685 0.87267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 13.88 67.78 0.94 -1.99 16 2 C -0.14 -2.85 4.70 -16.49 -0.08 -2.92 16 3 C -0.09 -1.52 6.10 29.85 0.18 -1.33 16 4 C -0.15 -2.26 9.90 71.99 0.71 -1.54 16 5 C 0.15 3.69 6.38 85.63 0.55 4.24 16 6 N -1.10 -30.94 5.99 -190.79 -1.14 -32.08 16 7 S 2.72 99.74 5.73 -56.49 -0.32 99.41 16 8 O -0.98 -38.40 16.74 -128.00 -2.14 -40.54 16 9 O -1.00 -41.61 17.26 -128.00 -2.21 -43.82 16 10 C -0.64 -27.70 5.94 22.22 0.13 -27.57 16 11 C -0.15 -6.26 9.53 22.46 0.21 -6.04 16 12 C -0.12 -5.38 10.02 22.22 0.22 -5.16 16 13 C -0.14 -7.15 8.70 22.73 0.20 -6.96 16 14 C 0.06 3.35 5.58 -21.29 -0.12 3.23 16 15 C -0.50 -26.55 9.05 23.46 0.21 -26.33 16 16 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 17 C 0.04 1.92 5.14 85.25 0.44 2.36 16 18 N -0.82 -40.87 10.95 21.83 0.24 -40.63 16 19 Si 0.98 37.03 29.60 68.60 2.03 39.06 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 21 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 22 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 23 C -0.15 -7.24 9.26 22.73 0.21 -7.03 16 24 H 0.12 1.69 7.99 -2.91 -0.02 1.67 16 25 H 0.10 1.92 7.99 -2.91 -0.02 1.90 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 1.14 7.99 -2.39 -0.02 1.12 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.81 7.99 -2.39 -0.02 1.79 16 32 H 0.09 2.12 7.75 -2.39 -0.02 2.10 16 33 H 0.42 10.16 8.64 -96.75 -0.84 9.32 16 34 H 0.13 4.81 7.61 -2.91 -0.02 4.79 16 35 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 36 H 0.11 5.89 6.15 -2.91 -0.02 5.87 16 37 H 0.29 13.10 8.30 -92.70 -0.77 12.33 16 38 H 0.11 5.26 7.60 -2.91 -0.02 5.24 16 Total: -1.00 -64.10 338.33 0.49 -63.61 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.23 Total: 32.04 kcal Atomic # 6 Polarization: -80.87 SS G_CDS: 3.81 Total: -77.05 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -0.90 Total: -72.71 kcal Atomic # 8 Polarization: -80.01 SS G_CDS: -4.35 Total: -84.36 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 2.03 Total: 39.06 kcal Atomic # 16 Polarization: 99.74 SS G_CDS: -0.32 Total: 99.41 kcal Total: -64.10 0.49 -63.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590764996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.105 kcal (2) G-P(sol) polarization free energy of solvation -64.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds