Wall clock time and date at job start Tue Mar 31 2020 07:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46529 * 2 1 4 4 C 1.50696 * 109.46985 * 239.99835 * 2 1 3 5 5 O 1.21278 * 119.99797 * 239.99692 * 4 2 1 6 6 N 1.34777 * 120.00191 * 60.00499 * 4 2 1 7 7 C 1.47427 * 125.64707 * 0.02562 * 6 4 2 8 8 C 1.54909 * 104.83126 * 155.84134 * 7 6 4 9 9 C 1.55155 * 101.58319 * 37.00899 * 8 7 6 10 10 O 1.42903 * 110.71521 * 82.86218 * 9 8 7 11 11 C 1.50694 * 110.72177 * 205.95503 * 9 8 7 12 12 H 1.07994 * 119.99866 * 116.15664 * 11 9 8 13 13 C 1.37880 * 120.00331 * 296.15939 * 11 9 8 14 14 N 1.31512 * 119.99598 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00162 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46749 * 59.99930 * 15 13 11 17 17 H 1.48494 * 109.46874 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47128 * 300.00250 * 15 13 11 19 19 C 1.47018 * 125.65385 * 179.97438 * 6 4 2 20 20 C 1.50696 * 109.47073 * 119.99786 * 2 1 3 21 21 C 1.33393 * 125.20288 * 239.72396 * 20 2 1 22 22 C 1.38424 * 114.91650 * 179.86197 * 21 20 2 23 23 C 1.33383 * 114.92461 * 0.42542 * 22 21 20 24 24 S 1.75881 * 125.20202 * 60.02693 * 20 2 1 25 25 H 1.09000 * 109.47074 * 60.00518 * 1 2 3 26 26 H 1.09000 * 109.46529 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47167 * 300.00309 * 1 2 3 28 28 H 1.09000 * 110.36621 * 37.00119 * 7 6 4 29 29 H 1.09001 * 110.37051 * 274.68116 * 7 6 4 30 30 H 1.09002 * 111.00456 * 278.93003 * 8 7 6 31 31 H 1.09007 * 111.03839 * 155.10257 * 8 7 6 32 32 H 0.96700 * 114.00311 * 61.45661 * 10 9 8 33 33 H 0.97002 * 119.99961 * 180.02562 * 14 13 11 34 34 H 1.09002 * 109.88150 * 61.66679 * 19 6 4 35 35 H 1.09002 * 109.88190 * 300.51123 * 19 6 4 36 36 H 1.07999 * 122.53717 * 0.02562 * 21 20 2 37 37 H 1.08006 * 122.53329 * 180.19908 * 22 21 20 38 38 H 1.08001 * 125.20129 * 179.75231 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 0.8716 0.9324 -2.7337 8 6 1.2966 1.3925 -4.1505 9 6 1.5406 0.0340 -4.8592 10 8 0.3111 -0.5138 -5.3390 11 6 2.5282 0.1906 -5.9865 12 1 3.4797 -0.3186 -5.9454 13 6 2.2171 0.9839 -7.0705 14 7 1.0587 1.6043 -7.1203 15 14 3.4417 1.1784 -8.4677 16 1 3.7257 -0.1509 -9.0656 17 1 2.8712 2.0754 -9.5045 18 1 4.7014 1.7648 -7.9437 19 6 2.1267 -0.8429 -3.7327 20 6 2.0324 -0.7103 1.2305 21 6 2.8068 -0.1660 2.1703 22 6 3.1408 -1.0128 3.2132 23 6 2.6451 -2.2472 3.1158 24 16 1.6934 -2.3861 1.6431 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.0700 1.7177 -2.0043 29 1 -0.1843 0.6620 -2.7235 30 1 2.2121 1.9828 -4.1113 31 1 0.4960 1.9492 -4.6377 32 1 -0.1371 0.0392 -5.9936 33 1 0.8396 2.1621 -7.8830 34 1 1.7403 -1.8588 -3.8148 35 1 3.2147 -0.8516 -3.7976 36 1 3.1452 0.8585 2.1226 37 1 3.7592 -0.6987 4.0411 38 1 2.8041 -3.0403 3.8315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846183.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:46 Heat of formation + Delta-G solvation = -49.593404 kcal Electronic energy + Delta-G solvation = -21784.625018 eV Core-core repulsion = 18525.782251 eV Total energy + Delta-G solvation = -3258.842767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.84884 -37.92865 -37.10051 -34.49063 -33.67491 -32.21826 -29.75957 -28.77227 -28.05964 -25.46485 -24.62420 -23.16575 -21.84524 -19.91905 -19.32876 -18.95519 -17.28545 -16.93086 -16.44089 -15.54903 -15.18155 -15.05264 -14.92471 -14.24021 -14.02047 -13.34994 -13.09681 -12.95755 -12.71270 -12.64231 -12.25136 -12.13699 -11.83589 -11.77752 -11.73836 -11.36986 -11.34022 -11.17610 -10.83676 -10.66664 -10.55020 -10.52215 -10.14507 -9.49138 -9.35881 -8.69848 -8.59268 -8.28213 -8.26050 -8.03916 -6.32060 -4.39035 1.06079 1.74662 2.14588 2.76685 3.00555 3.20401 3.25092 3.28622 3.52616 4.24771 4.55853 4.78712 4.96627 5.04795 5.08165 5.21362 5.44824 5.53993 5.56478 5.65016 5.69254 5.77881 5.85328 5.94201 6.06205 6.14601 6.20491 6.33526 6.42221 6.51555 6.65651 6.85690 6.92388 7.24801 7.29827 7.70366 7.98876 8.05964 8.56641 8.63452 9.28091 9.38200 10.75859 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.034723 B = 0.003617 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.189461 B = 7738.928238 C = 7920.384738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.038 4.038 3 H 0.110 0.890 4 C 0.523 3.477 5 O -0.541 6.541 6 N -0.605 5.605 7 C 0.093 3.907 8 C -0.137 4.137 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.535 4.535 12 H 0.064 0.936 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.903 3.097 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.123 3.877 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.136 4.136 23 C -0.231 4.231 24 S 0.141 5.859 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.383 0.617 33 H 0.269 0.731 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 0.284 15.991 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.062 4.062 3 H 0.128 0.872 4 C 0.309 3.691 5 O -0.419 6.419 6 N -0.338 5.338 7 C -0.029 4.029 8 C -0.176 4.176 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.574 4.574 12 H 0.082 0.918 13 C -0.129 4.129 14 N -0.537 5.537 15 Si 0.731 3.269 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.201 1.201 19 C 0.002 3.998 20 C -0.266 4.266 21 C -0.176 4.176 22 C -0.167 4.167 23 C -0.367 4.367 24 S 0.406 5.594 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.234 0.766 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.260 -1.821 15.744 16.009 hybrid contribution 1.407 1.879 -0.496 2.399 sum -0.853 0.058 15.248 15.272 Atomic orbital electron populations 1.21991 0.91874 1.03277 1.03649 1.19773 0.97673 0.99723 0.88985 0.87189 1.19954 0.80954 0.84803 0.83357 1.90699 1.38569 1.26548 1.86080 1.48578 1.50232 1.29498 1.05447 1.22610 0.94492 0.86569 0.99257 1.23341 1.01936 1.00656 0.91665 1.19437 0.83498 0.86715 0.89557 1.86124 1.38031 1.52263 1.63054 1.21486 1.02496 1.29436 1.03956 0.91818 1.24971 0.95615 0.94191 0.98139 1.69629 1.21666 1.31106 1.31262 0.86466 0.81046 0.78257 0.81174 1.19972 1.21092 1.20061 1.22074 0.99185 0.97498 0.81080 1.23978 1.05125 0.97556 0.99949 1.20038 1.00925 1.01584 0.95014 1.20034 1.03089 0.93229 1.00331 1.25673 1.07044 1.01436 1.02508 1.84323 1.49609 1.09764 1.15732 0.90275 0.92016 0.91213 0.92066 0.91579 0.91419 0.89423 0.76567 0.92108 0.92073 0.91024 0.84589 0.84698 0.82272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.93 37.16 0.33 -1.47 16 2 C -0.04 -0.54 2.45 -92.92 -0.23 -0.77 16 3 H 0.11 1.35 7.79 -51.93 -0.40 0.94 16 4 C 0.52 9.67 7.18 -10.99 -0.08 9.60 16 5 O -0.54 -11.73 15.58 5.56 0.09 -11.64 16 6 N -0.60 -11.65 3.32 -170.53 -0.57 -12.21 16 7 C 0.09 1.59 5.13 -2.53 -0.01 1.58 16 8 C -0.14 -2.84 5.56 -24.58 -0.14 -2.98 16 9 C 0.25 5.86 0.85 -89.95 -0.08 5.78 16 10 O -0.59 -14.41 13.06 -35.23 -0.46 -14.87 16 11 C -0.54 -13.84 8.22 -34.44 -0.28 -14.12 16 12 H 0.06 1.66 7.56 -52.49 -0.40 1.26 16 13 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 14 N -0.90 -22.57 10.69 55.43 0.59 -21.98 16 15 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 C 0.12 2.75 6.22 -3.07 -0.02 2.73 16 20 C -0.15 -2.09 4.60 -36.00 -0.17 -2.25 16 21 C -0.15 -1.82 10.01 -41.21 -0.41 -2.23 16 22 C -0.14 -1.55 10.18 -41.21 -0.42 -1.97 16 23 C -0.23 -2.68 11.23 29.04 0.33 -2.36 16 24 S 0.14 1.95 22.18 -107.50 -2.38 -0.43 16 25 H 0.08 0.93 5.00 -51.93 -0.26 0.67 16 26 H 0.06 0.79 8.00 -51.93 -0.42 0.37 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.86 7.36 -51.93 -0.38 0.48 16 29 H 0.07 1.08 7.07 -51.93 -0.37 0.72 16 30 H 0.07 1.44 8.04 -51.93 -0.42 1.03 16 31 H 0.09 1.88 7.64 -51.92 -0.40 1.48 16 32 H 0.38 9.44 7.28 45.56 0.33 9.77 16 33 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 34 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 35 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 36 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 38 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 323.62 15.07 4.88 4.88 Total: -1.00 -28.54 323.62 -8.50 -37.04 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -4.35 Total: 10.90 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.27 Total: -6.70 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.03 Total: -34.19 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.37 Total: -26.51 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.38 Total: -0.43 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.54 -8.50 -37.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846183.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.557 kcal (2) G-P(sol) polarization free energy of solvation -28.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds