Wall clock time and date at job start Tue Mar 31 2020 07:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46529 * 2 1 4 4 C 1.50696 * 109.46985 * 239.99835 * 2 1 3 5 5 O 1.21278 * 119.99797 * 239.99692 * 4 2 1 6 6 N 1.34777 * 120.00191 * 60.00499 * 4 2 1 7 7 C 1.47427 * 125.64707 * 0.02562 * 6 4 2 8 8 C 1.54909 * 104.83126 * 155.84134 * 7 6 4 9 9 C 1.55155 * 101.58319 * 37.00899 * 8 7 6 10 10 O 1.42903 * 110.71521 * 82.86218 * 9 8 7 11 11 C 1.50694 * 110.72177 * 205.95503 * 9 8 7 12 12 H 1.07994 * 119.99866 * 116.15664 * 11 9 8 13 13 C 1.37880 * 120.00331 * 296.15939 * 11 9 8 14 14 N 1.31512 * 119.99598 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00162 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46749 * 59.99930 * 15 13 11 17 17 H 1.48494 * 109.46874 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47128 * 300.00250 * 15 13 11 19 19 C 1.47018 * 125.65385 * 179.97438 * 6 4 2 20 20 C 1.50696 * 109.47073 * 119.99786 * 2 1 3 21 21 C 1.33393 * 125.20288 * 239.72396 * 20 2 1 22 22 C 1.38424 * 114.91650 * 179.86197 * 21 20 2 23 23 C 1.33383 * 114.92461 * 0.42542 * 22 21 20 24 24 S 1.75881 * 125.20202 * 60.02693 * 20 2 1 25 25 H 1.09000 * 109.47074 * 60.00518 * 1 2 3 26 26 H 1.09000 * 109.46529 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47167 * 300.00309 * 1 2 3 28 28 H 1.09000 * 110.36621 * 37.00119 * 7 6 4 29 29 H 1.09001 * 110.37051 * 274.68116 * 7 6 4 30 30 H 1.09002 * 111.00456 * 278.93003 * 8 7 6 31 31 H 1.09007 * 111.03839 * 155.10257 * 8 7 6 32 32 H 0.96700 * 114.00311 * 61.45661 * 10 9 8 33 33 H 0.97002 * 119.99961 * 180.02562 * 14 13 11 34 34 H 1.09002 * 109.88150 * 61.66679 * 19 6 4 35 35 H 1.09002 * 109.88190 * 300.51123 * 19 6 4 36 36 H 1.07999 * 122.53717 * 0.02562 * 21 20 2 37 37 H 1.08006 * 122.53329 * 180.19908 * 22 21 20 38 38 H 1.08001 * 125.20129 * 179.75231 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 0.8716 0.9324 -2.7337 8 6 1.2966 1.3925 -4.1505 9 6 1.5406 0.0340 -4.8592 10 8 0.3111 -0.5138 -5.3390 11 6 2.5282 0.1906 -5.9865 12 1 3.4797 -0.3186 -5.9454 13 6 2.2171 0.9839 -7.0705 14 7 1.0587 1.6043 -7.1203 15 14 3.4417 1.1784 -8.4677 16 1 3.7257 -0.1509 -9.0656 17 1 2.8712 2.0754 -9.5045 18 1 4.7014 1.7648 -7.9437 19 6 2.1267 -0.8429 -3.7327 20 6 2.0324 -0.7103 1.2305 21 6 2.8068 -0.1660 2.1703 22 6 3.1408 -1.0128 3.2132 23 6 2.6451 -2.2472 3.1158 24 16 1.6934 -2.3861 1.6431 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.0700 1.7177 -2.0043 29 1 -0.1843 0.6620 -2.7235 30 1 2.2121 1.9828 -4.1113 31 1 0.4960 1.9492 -4.6377 32 1 -0.1371 0.0392 -5.9936 33 1 0.8396 2.1621 -7.8830 34 1 1.7403 -1.8588 -3.8148 35 1 3.2147 -0.8516 -3.7976 36 1 3.1452 0.8585 2.1226 37 1 3.7592 -0.6987 4.0411 38 1 2.8041 -3.0403 3.8315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846183.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:46 Heat of formation + Delta-G solvation = -67.815389 kcal Electronic energy + Delta-G solvation = -21785.415183 eV Core-core repulsion = 18525.782251 eV Total energy + Delta-G solvation = -3259.632932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.31541 -39.28454 -38.40874 -36.18005 -34.85743 -34.18366 -31.39442 -30.18605 -29.31906 -27.17038 -25.80259 -24.41814 -23.18193 -21.62923 -20.44011 -20.26173 -19.15664 -18.14885 -17.78426 -16.95195 -16.84777 -16.44938 -16.28975 -16.00411 -15.33257 -14.83130 -14.58580 -14.15998 -13.94692 -13.81089 -13.55061 -13.43016 -13.26503 -13.21204 -13.10609 -13.02492 -12.74654 -12.48573 -12.42064 -12.33343 -12.23548 -11.95481 -11.51837 -11.27839 -10.86886 -10.61465 -10.14572 -9.65186 -9.54729 -9.29024 -8.25455 -6.39134 0.10719 0.78573 1.20683 1.42291 1.44371 1.51153 1.57979 1.81163 2.11468 2.39767 3.00153 3.45340 3.60059 3.88104 3.98505 4.03459 4.19031 4.27052 4.29247 4.41605 4.56451 4.63713 4.67382 4.71970 4.81534 4.82990 4.91567 5.14930 5.19115 5.23255 5.25239 5.40609 5.45908 5.53080 5.63790 5.76115 6.07932 6.56860 6.64768 7.10288 7.31230 7.42649 8.80665 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.034723 B = 0.003617 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.189461 B = 7738.928238 C = 7920.384738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.028 4.028 3 H 0.137 0.863 4 C 0.517 3.483 5 O -0.579 6.579 6 N -0.608 5.608 7 C 0.102 3.898 8 C -0.128 4.128 9 C 0.236 3.764 10 O -0.593 6.593 11 C -0.566 4.566 12 H 0.049 0.951 13 C 0.040 3.960 14 N -0.904 5.904 15 Si 0.957 3.043 16 H -0.280 1.280 17 H -0.276 1.276 18 H -0.273 1.273 19 C 0.130 3.870 20 C -0.171 4.171 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.221 4.221 24 S 0.081 5.919 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.381 0.619 33 H 0.273 0.727 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.795 2.037 17.809 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.051 4.051 3 H 0.155 0.845 4 C 0.306 3.694 5 O -0.459 6.459 6 N -0.340 5.340 7 C -0.019 4.019 8 C -0.167 4.167 9 C 0.196 3.804 10 O -0.403 6.403 11 C -0.604 4.604 12 H 0.067 0.933 13 C -0.162 4.162 14 N -0.543 5.543 15 Si 0.783 3.217 16 H -0.205 1.205 17 H -0.201 1.201 18 H -0.198 1.198 19 C 0.007 3.993 20 C -0.289 4.289 21 C -0.170 4.170 22 C -0.171 4.171 23 C -0.357 4.357 24 S 0.345 5.655 25 H 0.101 0.899 26 H 0.065 0.935 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.231 0.769 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.177 0.823 37 H 0.183 0.817 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.203 -0.050 17.580 17.717 hybrid contribution 1.429 1.283 -1.024 2.176 sum -0.774 1.233 16.556 16.620 Atomic orbital electron populations 1.21993 0.90289 1.02872 1.05145 1.19796 0.98851 1.00134 0.86313 0.84544 1.20904 0.79962 0.84434 0.84079 1.90675 1.40230 1.28370 1.86649 1.48635 1.50647 1.30010 1.04733 1.22672 0.94599 0.86670 0.97970 1.23118 1.01284 0.98641 0.93620 1.19564 0.82719 0.88569 0.89519 1.86111 1.38409 1.52695 1.63037 1.21707 1.02721 1.30280 1.05696 0.93287 1.25541 0.97116 0.93813 0.99692 1.69678 1.22181 1.30788 1.31661 0.85633 0.79338 0.77899 0.78862 1.20518 1.20099 1.19849 1.21755 0.98075 0.96551 0.82917 1.24050 1.06917 0.97224 1.00735 1.20436 0.99311 1.02751 0.94485 1.20418 1.03011 0.92829 1.00875 1.25987 1.05842 1.02434 1.01392 1.84527 1.51406 1.11340 1.18184 0.89888 0.93469 0.88444 0.87814 0.90427 0.92326 0.90119 0.76858 0.91790 0.94214 0.92588 0.82294 0.81667 0.79831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.93 71.98 0.64 -2.49 16 2 C -0.03 -0.73 2.45 -12.29 -0.03 -0.76 16 3 H 0.14 2.79 7.79 -2.39 -0.02 2.77 16 4 C 0.52 18.85 7.18 87.66 0.63 19.48 16 5 O -0.58 -25.54 15.58 -3.02 -0.05 -25.59 16 6 N -0.61 -23.15 3.32 -811.82 -2.70 -25.85 16 7 C 0.10 3.30 5.13 86.85 0.45 3.74 16 8 C -0.13 -5.23 5.56 31.99 0.18 -5.05 16 9 C 0.24 11.36 0.85 -10.36 -0.01 11.35 16 10 O -0.59 -29.75 13.06 -148.98 -1.95 -31.70 16 11 C -0.57 -29.91 8.22 25.60 0.21 -29.70 16 12 H 0.05 2.65 7.56 -2.91 -0.02 2.63 16 13 C 0.04 2.03 5.29 84.66 0.45 2.48 16 14 N -0.90 -45.27 10.69 21.45 0.23 -45.04 16 15 Si 0.96 41.09 29.54 68.60 2.03 43.11 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 19 C 0.13 6.00 6.22 86.73 0.54 6.54 16 20 C -0.17 -4.52 4.60 24.59 0.11 -4.41 16 21 C -0.14 -3.06 10.01 21.22 0.21 -2.85 16 22 C -0.14 -2.77 10.18 21.21 0.22 -2.56 16 23 C -0.22 -4.67 11.23 66.72 0.75 -3.92 16 24 S 0.08 2.21 22.18 -56.49 -1.25 0.96 16 25 H 0.08 1.70 5.00 -2.39 -0.01 1.69 16 26 H 0.05 1.15 8.00 -2.39 -0.02 1.13 16 27 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.10 2.50 7.36 -2.39 -0.02 2.49 16 29 H 0.08 2.36 7.07 -2.39 -0.02 2.35 16 30 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 31 H 0.08 3.40 7.64 -2.38 -0.02 3.38 16 32 H 0.38 19.04 7.28 -74.06 -0.54 18.50 16 33 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 34 H 0.04 1.95 8.07 -2.39 -0.02 1.93 16 35 H 0.06 2.70 7.66 -2.39 -0.02 2.68 16 36 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 38 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -63.01 323.62 1.20 -61.81 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.54 Total: 30.43 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 4.34 Total: -8.14 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -2.47 Total: -70.89 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -1.99 Total: -57.28 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.25 Total: 0.96 kcal Total: -63.01 1.20 -61.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846183.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.003 kcal (2) G-P(sol) polarization free energy of solvation -63.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds