Wall clock time and date at job start Tue Mar 31 2020 07:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 C 1.50710 * 109.46811 * 240.00494 * 2 1 3 5 5 O 1.21274 * 120.00099 * 327.44722 * 4 2 1 6 6 N 1.34777 * 119.99744 * 147.45153 * 4 2 1 7 7 C 1.47430 * 125.65076 * 5.05188 * 6 4 2 8 8 C 1.54904 * 104.83229 * 204.09353 * 7 6 4 9 9 C 1.55160 * 101.58171 * 322.98768 * 8 7 6 10 10 O 1.42898 * 110.72136 * 277.14006 * 9 8 7 11 11 C 1.50701 * 110.71704 * 154.04270 * 9 8 7 12 12 H 1.08006 * 120.00162 * 241.45100 * 11 9 8 13 13 C 1.37869 * 120.00236 * 61.45777 * 11 9 8 14 14 N 1.31517 * 119.99892 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00311 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47183 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47342 * 119.99825 * 15 13 11 18 18 H 1.48494 * 109.47260 * 239.99857 * 15 13 11 19 19 C 1.47028 * 125.64601 * 184.74523 * 6 4 2 20 20 C 1.50697 * 109.47224 * 120.00773 * 2 1 3 21 21 C 1.33387 * 125.20164 * 240.00119 * 20 2 1 22 22 C 1.38428 * 114.91988 * 179.97438 * 21 20 2 23 23 C 1.33385 * 114.92099 * 0.25034 * 22 21 20 24 24 S 1.75878 * 109.59377 * 359.62945 * 23 22 21 25 25 H 1.08994 * 109.46777 * 297.88782 * 1 2 3 26 26 H 1.09003 * 109.47284 * 57.88675 * 1 2 3 27 27 H 1.09004 * 109.47314 * 177.88410 * 1 2 3 28 28 H 1.09006 * 110.36358 * 322.93343 * 7 6 4 29 29 H 1.08994 * 110.36585 * 85.14321 * 7 6 4 30 30 H 1.09002 * 111.00672 * 81.06403 * 8 7 6 31 31 H 1.09002 * 111.00233 * 204.91688 * 8 7 6 32 32 H 0.96702 * 113.99752 * 298.54146 * 10 9 8 33 33 H 0.97006 * 119.99869 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.87692 * 298.38864 * 19 6 4 35 35 H 1.08996 * 109.87950 * 59.55625 * 19 6 4 36 36 H 1.08003 * 122.54078 * 359.97438 * 21 20 2 37 37 H 1.07998 * 122.53434 * 179.97438 * 22 21 20 38 38 H 1.07997 * 125.20018 * 179.76067 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 1.3997 -1.6331 -1.6988 6 7 3.1845 -0.3202 -1.8108 7 6 4.1024 0.7100 -1.2913 8 6 4.8740 1.2173 -2.5350 9 6 5.0478 -0.0921 -3.3491 10 8 6.1737 -0.8351 -2.8774 11 6 5.1880 0.2088 -4.8191 12 1 4.4609 -0.1736 -5.5203 13 6 6.2443 0.9721 -5.2689 14 7 7.1294 1.4380 -4.4151 15 14 6.4184 1.3445 -7.0911 16 1 5.3009 0.7098 -7.8351 17 1 6.3811 2.8140 -7.3019 18 1 7.7113 0.8063 -7.5850 19 6 3.7375 -0.8558 -3.0634 20 6 2.0323 -0.7106 1.2303 21 6 2.8024 -0.1649 2.1729 22 6 3.1396 -1.0128 3.2138 23 6 2.6475 -2.2486 3.1139 24 16 1.6923 -2.3860 1.6436 25 1 -0.3633 0.4807 0.9083 26 1 -0.3634 0.5463 -0.8704 27 1 -0.3634 -1.0270 -0.0379 28 1 3.5394 1.5247 -0.8357 29 1 4.7908 0.2743 -0.5673 30 1 4.2843 1.9470 -3.0899 31 1 5.8412 1.6327 -2.2520 32 1 7.0162 -0.3680 -2.9614 33 1 7.8729 1.9748 -4.7316 34 1 3.9433 -1.9204 -2.9522 35 1 3.0318 -0.6956 -3.8785 36 1 3.1376 0.8609 2.1273 37 1 3.7579 -0.6988 4.0417 38 1 2.8091 -3.0426 3.8279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:50 Heat of formation + Delta-G solvation = -53.822977 kcal Electronic energy + Delta-G solvation = -21949.533922 eV Core-core repulsion = 18690.507747 eV Total energy + Delta-G solvation = -3259.026175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.80305 -37.91177 -37.24213 -34.34133 -33.64300 -32.23801 -29.70238 -28.59087 -28.38587 -25.64453 -24.37940 -23.09589 -21.96160 -19.77267 -19.37802 -18.88872 -17.37373 -17.14798 -16.42324 -15.64143 -15.11651 -14.96900 -14.83200 -14.26627 -13.84986 -13.60395 -13.07262 -12.99572 -12.77555 -12.38741 -12.23027 -12.16205 -11.95465 -11.68433 -11.60096 -11.44387 -11.35929 -11.22315 -10.92156 -10.65883 -10.56785 -10.47304 -10.13712 -9.56312 -9.37105 -8.71270 -8.59240 -8.42301 -8.24356 -8.03009 -6.31172 -4.38650 0.97470 1.64733 2.06211 2.69320 3.01343 3.17352 3.26578 3.31163 3.50708 4.25135 4.66964 4.80662 4.97686 4.99904 5.06632 5.22500 5.46059 5.53404 5.56326 5.67281 5.73538 5.83775 5.91937 5.99738 6.06562 6.16930 6.19909 6.27307 6.44057 6.45457 6.66798 6.87638 6.94562 7.26666 7.32525 7.70897 7.99826 8.07281 8.56475 8.64750 9.28225 9.37382 10.76440 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.004112 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.316820 B = 6807.611947 C = 7153.829744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.039 4.039 3 H 0.105 0.895 4 C 0.527 3.473 5 O -0.547 6.547 6 N -0.603 5.603 7 C 0.095 3.905 8 C -0.134 4.134 9 C 0.247 3.753 10 O -0.585 6.585 11 C -0.534 4.534 12 H 0.065 0.935 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.902 3.098 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.122 3.878 20 C -0.164 4.164 21 C -0.135 4.135 22 C -0.134 4.134 23 C -0.225 4.225 24 S 0.128 5.872 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.382 0.618 33 H 0.267 0.733 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 0.249 13.649 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.062 4.062 3 H 0.123 0.877 4 C 0.314 3.686 5 O -0.425 6.425 6 N -0.335 5.335 7 C -0.027 4.027 8 C -0.173 4.173 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.572 4.572 12 H 0.083 0.917 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.207 1.207 19 C 0.001 3.999 20 C -0.282 4.282 21 C -0.166 4.166 22 C -0.165 4.165 23 C -0.361 4.361 24 S 0.392 5.608 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.232 0.768 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.120 -1.789 12.894 15.894 hybrid contribution 1.637 1.929 -0.323 2.550 sum -7.483 0.140 12.571 14.630 Atomic orbital electron populations 1.21709 0.91535 1.03574 1.02260 1.19845 0.97859 0.99472 0.89032 0.87689 1.19930 0.80201 0.83902 0.84582 1.90659 1.57392 1.29398 1.65076 1.48634 1.20568 1.39214 1.25049 1.22542 0.91881 0.89667 0.98654 1.23305 1.00049 1.00169 0.93802 1.19476 0.82160 0.85626 0.92037 1.86149 1.18867 1.47798 1.86572 1.21550 1.10906 1.32643 0.92147 0.91717 1.24976 0.95101 0.94384 0.98506 1.69707 1.13888 1.35675 1.34275 0.86366 0.78278 0.77990 0.84388 1.19576 1.20827 1.20739 1.22084 0.95409 0.98320 0.84129 1.24091 1.05855 0.97765 1.00481 1.20126 1.00317 1.01661 0.94448 1.20100 1.02858 0.93129 1.00407 1.25722 1.06255 1.01530 1.02581 1.84583 1.49855 1.09485 1.16873 0.91611 0.91572 0.91189 0.92234 0.91826 0.91426 0.89309 0.76813 0.92266 0.92055 0.90978 0.84203 0.84405 0.82078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 8.77 37.16 0.33 -1.34 16 2 C -0.04 -0.56 2.69 -92.92 -0.25 -0.81 16 3 H 0.11 1.31 6.41 -51.93 -0.33 0.98 16 4 C 0.53 9.88 6.77 -10.98 -0.07 9.81 16 5 O -0.55 -11.79 16.51 5.56 0.09 -11.69 16 6 N -0.60 -11.96 3.33 -170.51 -0.57 -12.53 16 7 C 0.10 1.71 6.72 -2.53 -0.02 1.69 16 8 C -0.13 -2.85 5.47 -24.58 -0.13 -2.98 16 9 C 0.25 5.92 0.84 -89.93 -0.08 5.84 16 10 O -0.59 -14.67 13.06 -35.23 -0.46 -15.13 16 11 C -0.53 -13.87 8.22 -34.44 -0.28 -14.16 16 12 H 0.06 1.70 7.59 -52.48 -0.40 1.30 16 13 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 14 N -0.90 -22.70 10.67 55.43 0.59 -22.11 16 15 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 19 C 0.12 2.77 6.23 -3.05 -0.02 2.75 16 20 C -0.16 -2.26 5.08 -36.01 -0.18 -2.45 16 21 C -0.13 -1.64 10.01 -41.21 -0.41 -2.05 16 22 C -0.13 -1.50 10.18 -41.21 -0.42 -1.92 16 23 C -0.23 -2.56 11.23 29.04 0.33 -2.23 16 24 S 0.13 1.74 23.08 -107.50 -2.48 -0.74 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.96 7.71 -51.93 -0.40 0.56 16 28 H 0.06 0.88 6.65 -51.93 -0.35 0.53 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 31 H 0.09 1.95 7.53 -51.93 -0.39 1.56 16 32 H 0.38 9.52 7.46 45.56 0.34 9.86 16 33 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 34 H 0.06 1.46 8.07 -51.93 -0.42 1.05 16 35 H 0.07 1.65 7.67 -51.93 -0.40 1.25 16 36 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 37 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 329.05 15.07 4.96 4.96 Total: -1.00 -28.58 329.05 -8.63 -37.22 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -4.43 Total: 11.05 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -1.31 Total: -6.08 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.02 Total: -34.64 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.37 Total: -26.82 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.48 Total: -0.74 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.58 -8.63 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.605 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds