Wall clock time and date at job start Tue Mar 31 2020 07:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 C 1.50710 * 109.46811 * 240.00494 * 2 1 3 5 5 O 1.21274 * 120.00099 * 327.44722 * 4 2 1 6 6 N 1.34777 * 119.99744 * 147.45153 * 4 2 1 7 7 C 1.47430 * 125.65076 * 5.05188 * 6 4 2 8 8 C 1.54904 * 104.83229 * 204.09353 * 7 6 4 9 9 C 1.55160 * 101.58171 * 322.98768 * 8 7 6 10 10 O 1.42898 * 110.72136 * 277.14006 * 9 8 7 11 11 C 1.50701 * 110.71704 * 154.04270 * 9 8 7 12 12 H 1.08006 * 120.00162 * 241.45100 * 11 9 8 13 13 C 1.37869 * 120.00236 * 61.45777 * 11 9 8 14 14 N 1.31517 * 119.99892 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00311 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47183 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47342 * 119.99825 * 15 13 11 18 18 H 1.48494 * 109.47260 * 239.99857 * 15 13 11 19 19 C 1.47028 * 125.64601 * 184.74523 * 6 4 2 20 20 C 1.50697 * 109.47224 * 120.00773 * 2 1 3 21 21 C 1.33387 * 125.20164 * 240.00119 * 20 2 1 22 22 C 1.38428 * 114.91988 * 179.97438 * 21 20 2 23 23 C 1.33385 * 114.92099 * 0.25034 * 22 21 20 24 24 S 1.75878 * 109.59377 * 359.62945 * 23 22 21 25 25 H 1.08994 * 109.46777 * 297.88782 * 1 2 3 26 26 H 1.09003 * 109.47284 * 57.88675 * 1 2 3 27 27 H 1.09004 * 109.47314 * 177.88410 * 1 2 3 28 28 H 1.09006 * 110.36358 * 322.93343 * 7 6 4 29 29 H 1.08994 * 110.36585 * 85.14321 * 7 6 4 30 30 H 1.09002 * 111.00672 * 81.06403 * 8 7 6 31 31 H 1.09002 * 111.00233 * 204.91688 * 8 7 6 32 32 H 0.96702 * 113.99752 * 298.54146 * 10 9 8 33 33 H 0.97006 * 119.99869 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.87692 * 298.38864 * 19 6 4 35 35 H 1.08996 * 109.87950 * 59.55625 * 19 6 4 36 36 H 1.08003 * 122.54078 * 359.97438 * 21 20 2 37 37 H 1.07998 * 122.53434 * 179.97438 * 22 21 20 38 38 H 1.07997 * 125.20018 * 179.76067 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 1.3997 -1.6331 -1.6988 6 7 3.1845 -0.3202 -1.8108 7 6 4.1024 0.7100 -1.2913 8 6 4.8740 1.2173 -2.5350 9 6 5.0478 -0.0921 -3.3491 10 8 6.1737 -0.8351 -2.8774 11 6 5.1880 0.2088 -4.8191 12 1 4.4609 -0.1736 -5.5203 13 6 6.2443 0.9721 -5.2689 14 7 7.1294 1.4380 -4.4151 15 14 6.4184 1.3445 -7.0911 16 1 5.3009 0.7098 -7.8351 17 1 6.3811 2.8140 -7.3019 18 1 7.7113 0.8063 -7.5850 19 6 3.7375 -0.8558 -3.0634 20 6 2.0323 -0.7106 1.2303 21 6 2.8024 -0.1649 2.1729 22 6 3.1396 -1.0128 3.2138 23 6 2.6475 -2.2486 3.1139 24 16 1.6923 -2.3860 1.6436 25 1 -0.3633 0.4807 0.9083 26 1 -0.3634 0.5463 -0.8704 27 1 -0.3634 -1.0270 -0.0379 28 1 3.5394 1.5247 -0.8357 29 1 4.7908 0.2743 -0.5673 30 1 4.2843 1.9470 -3.0899 31 1 5.8412 1.6327 -2.2520 32 1 7.0162 -0.3680 -2.9614 33 1 7.8729 1.9748 -4.7316 34 1 3.9433 -1.9204 -2.9522 35 1 3.0318 -0.6956 -3.8785 36 1 3.1376 0.8609 2.1273 37 1 3.7579 -0.6988 4.0417 38 1 2.8091 -3.0426 3.8279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:49 Heat of formation + Delta-G solvation = -71.881734 kcal Electronic energy + Delta-G solvation = -21950.317008 eV Core-core repulsion = 18690.507747 eV Total energy + Delta-G solvation = -3259.809262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.29598 -39.27782 -38.55281 -36.12144 -34.77462 -34.21766 -31.40495 -30.10731 -29.51275 -27.37067 -25.55998 -24.40520 -23.34319 -21.53199 -20.36034 -20.26879 -19.17214 -18.56226 -17.72807 -16.94269 -16.79359 -16.50083 -16.22291 -16.04934 -15.28448 -14.87891 -14.59277 -14.23533 -13.94747 -13.72314 -13.52052 -13.49067 -13.30416 -13.21576 -13.13600 -12.93772 -12.68744 -12.64099 -12.50945 -12.28941 -12.26558 -11.98162 -11.55057 -11.29094 -10.96112 -10.63662 -10.15246 -9.66512 -9.57971 -9.41770 -8.25378 -6.39774 0.04086 0.69605 1.14675 1.39900 1.44598 1.51510 1.54287 1.84479 2.04649 2.39607 3.00178 3.48289 3.63899 3.85966 3.95016 3.99784 4.16916 4.25833 4.26999 4.43171 4.56967 4.60798 4.69735 4.71909 4.80614 4.85541 4.90499 5.14996 5.15701 5.19297 5.26811 5.36971 5.45636 5.52940 5.59927 5.75813 6.07366 6.55314 6.64632 7.07230 7.30478 7.39822 8.80869 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.004112 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.316820 B = 6807.611947 C = 7153.829744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.028 4.028 3 H 0.131 0.869 4 C 0.522 3.478 5 O -0.582 6.582 6 N -0.608 5.608 7 C 0.105 3.895 8 C -0.124 4.124 9 C 0.236 3.764 10 O -0.594 6.594 11 C -0.564 4.564 12 H 0.049 0.951 13 C 0.040 3.960 14 N -0.904 5.904 15 Si 0.958 3.042 16 H -0.277 1.277 17 H -0.273 1.273 18 H -0.279 1.279 19 C 0.128 3.872 20 C -0.186 4.186 21 C -0.123 4.123 22 C -0.139 4.139 23 C -0.213 4.213 24 S 0.065 5.935 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.380 0.620 33 H 0.272 0.728 34 H 0.037 0.963 35 H 0.060 0.940 36 H 0.166 0.834 37 H 0.169 0.831 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 2.051 15.544 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.051 4.051 3 H 0.148 0.852 4 C 0.311 3.689 5 O -0.463 6.463 6 N -0.339 5.339 7 C -0.017 4.017 8 C -0.163 4.163 9 C 0.196 3.804 10 O -0.403 6.403 11 C -0.602 4.602 12 H 0.068 0.932 13 C -0.161 4.161 14 N -0.543 5.543 15 Si 0.784 3.216 16 H -0.202 1.202 17 H -0.199 1.199 18 H -0.204 1.204 19 C 0.005 3.995 20 C -0.304 4.304 21 C -0.154 4.154 22 C -0.169 4.169 23 C -0.349 4.349 24 S 0.329 5.671 25 H 0.112 0.888 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.121 0.879 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.229 0.771 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.183 0.817 37 H 0.186 0.814 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.852 0.028 14.814 17.258 hybrid contribution 1.587 1.315 -0.872 2.238 sum -7.265 1.343 13.942 15.779 Atomic orbital electron populations 1.21720 0.90492 1.02777 1.03776 1.19845 0.98679 0.99907 0.86665 0.85151 1.20886 0.79145 0.83454 0.85369 1.90636 1.58235 1.31103 1.66336 1.48720 1.21355 1.39675 1.24195 1.22546 0.91824 0.90218 0.97064 1.23075 1.00074 0.98388 0.94722 1.19608 0.81944 0.87099 0.91771 1.86136 1.19132 1.48426 1.86608 1.21737 1.11457 1.33741 0.93267 0.93233 1.25543 0.94691 0.94024 1.01869 1.69753 1.13833 1.35331 1.35389 0.85515 0.77845 0.78050 0.80232 1.20211 1.19867 1.20435 1.21787 0.95041 0.97013 0.85629 1.24045 1.07833 0.97357 1.01127 1.20517 0.98373 1.02822 0.93660 1.20483 1.02770 0.92696 1.00955 1.26030 1.04942 1.02556 1.01356 1.84837 1.51739 1.11143 1.19421 0.88751 0.91400 0.93109 0.87873 0.91442 0.92119 0.90071 0.77066 0.91841 0.94412 0.92204 0.81687 0.81406 0.79711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.77 71.98 0.63 -2.41 16 2 C -0.03 -0.75 2.69 -12.28 -0.03 -0.78 16 3 H 0.13 2.73 6.41 -2.39 -0.02 2.71 16 4 C 0.52 19.35 6.77 87.66 0.59 19.95 16 5 O -0.58 -25.75 16.51 -3.01 -0.05 -25.80 16 6 N -0.61 -23.84 3.33 -811.75 -2.70 -26.54 16 7 C 0.11 3.55 6.72 86.85 0.58 4.13 16 8 C -0.12 -5.15 5.47 31.99 0.17 -4.97 16 9 C 0.24 11.46 0.84 -10.35 -0.01 11.45 16 10 O -0.59 -30.28 13.06 -148.98 -1.95 -32.23 16 11 C -0.56 -29.87 8.22 25.60 0.21 -29.66 16 12 H 0.05 2.69 7.59 -2.91 -0.02 2.67 16 13 C 0.04 2.05 5.28 84.65 0.45 2.50 16 14 N -0.90 -45.37 10.67 21.44 0.23 -45.14 16 15 Si 0.96 41.05 29.54 68.60 2.03 43.08 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 C 0.13 6.01 6.23 86.73 0.54 6.55 16 20 C -0.19 -4.72 5.08 24.59 0.12 -4.60 16 21 C -0.12 -2.52 10.01 21.22 0.21 -2.31 16 22 C -0.14 -2.58 10.18 21.22 0.22 -2.36 16 23 C -0.21 -4.32 11.23 66.72 0.75 -3.57 16 24 S 0.06 1.73 23.08 -56.49 -1.30 0.43 16 25 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 1.38 7.71 -2.39 -0.02 1.37 16 28 H 0.10 2.60 6.65 -2.38 -0.02 2.59 16 29 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.06 2.58 8.04 -2.39 -0.02 2.56 16 31 H 0.08 3.49 7.53 -2.39 -0.02 3.47 16 32 H 0.38 19.17 7.46 -74.06 -0.55 18.61 16 33 H 0.27 12.93 8.31 -92.70 -0.77 12.16 16 34 H 0.04 1.89 8.07 -2.39 -0.02 1.88 16 35 H 0.06 2.88 7.67 -2.39 -0.02 2.86 16 36 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -62.97 329.05 1.22 -61.75 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.52 Total: 30.54 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 4.44 Total: -6.09 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -2.47 Total: -71.68 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: -2.00 Total: -58.02 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.30 Total: 0.43 kcal Total: -62.97 1.22 -61.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.132 kcal (2) G-P(sol) polarization free energy of solvation -62.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds