Wall clock time and date at job start Tue Mar 31 2020 07:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47265 * 2 1 4 4 C 1.50706 * 109.47264 * 119.99712 * 2 1 3 5 5 O 1.21283 * 119.99854 * 33.30054 * 4 2 1 6 6 N 1.34771 * 120.00050 * 213.30513 * 4 2 1 7 7 C 1.47427 * 125.65287 * 354.74394 * 6 4 2 8 8 C 1.54905 * 104.83698 * 155.90706 * 7 6 4 9 9 C 1.55163 * 101.57784 * 37.01298 * 8 7 6 10 10 O 1.42895 * 110.71840 * 82.86315 * 9 8 7 11 11 C 1.50699 * 110.71938 * 205.95774 * 9 8 7 12 12 H 1.07999 * 120.00181 * 116.15587 * 11 9 8 13 13 C 1.37884 * 120.00143 * 296.15874 * 11 9 8 14 14 N 1.31512 * 119.99602 * 0.02562 * 13 11 9 15 15 Si 1.86792 * 120.00099 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47232 * 89.99803 * 15 13 11 17 17 H 1.48504 * 109.47051 * 209.99586 * 15 13 11 18 18 H 1.48499 * 109.47589 * 329.99781 * 15 13 11 19 19 C 1.47022 * 125.64935 * 174.78816 * 6 4 2 20 20 C 1.50700 * 109.47241 * 239.99734 * 2 1 3 21 21 C 1.33389 * 125.20226 * 120.00267 * 20 2 1 22 22 C 1.38428 * 114.91892 * 179.97438 * 21 20 2 23 23 C 1.33389 * 114.91927 * 359.97438 * 22 21 20 24 24 S 1.75880 * 109.59626 * 359.75576 * 23 22 21 25 25 H 1.08999 * 109.47127 * 184.51054 * 1 2 3 26 26 H 1.09001 * 109.46925 * 304.51022 * 1 2 3 27 27 H 1.09001 * 109.46841 * 64.50869 * 1 2 3 28 28 H 1.09008 * 110.35948 * 37.07103 * 7 6 4 29 29 H 1.08997 * 110.37182 * 274.75480 * 7 6 4 30 30 H 1.09001 * 111.00670 * 278.94330 * 8 7 6 31 31 H 1.08998 * 111.04091 * 155.10063 * 8 7 6 32 32 H 0.96697 * 114.00653 * 61.45647 * 10 9 8 33 33 H 0.96999 * 119.99944 * 179.97438 * 14 13 11 34 34 H 1.09005 * 109.87974 * 61.60640 * 19 6 4 35 35 H 1.08998 * 109.88629 * 300.44481 * 19 6 4 36 36 H 1.07993 * 122.54351 * 359.97438 * 21 20 2 37 37 H 1.08000 * 122.53845 * 180.02562 * 22 21 20 38 38 H 1.08002 * 125.19965 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.4068 -1.6419 1.6908 6 7 3.1767 -0.3104 1.8195 7 6 4.0887 0.7289 1.3082 8 6 4.8466 1.2415 2.5581 9 6 5.0267 -0.0674 3.3716 10 8 6.1627 -0.7992 2.9070 11 6 5.1534 0.2325 4.8430 12 1 4.4040 -0.1250 5.5336 13 6 6.2263 0.9634 5.3077 14 7 7.1386 1.3993 4.4668 15 14 6.3838 1.3346 7.1316 16 1 7.1540 0.2506 7.7927 17 1 7.0917 2.6272 7.3144 18 1 5.0309 1.4210 7.7379 19 6 3.7228 -0.8389 3.0781 20 6 2.0323 -0.7105 -1.2304 21 6 2.8025 -0.1647 -2.1729 22 6 3.1405 -1.0129 -3.2133 23 6 2.6452 -2.2476 -3.1154 24 16 1.7001 -2.3886 -1.6389 25 1 -0.3633 -1.0245 0.0808 26 1 -0.3633 0.5822 0.8468 27 1 -0.3633 0.4423 -0.9276 28 1 3.5214 1.5391 0.8497 29 1 4.7876 0.3004 0.5899 30 1 4.2462 1.9649 3.1098 31 1 5.8119 1.6667 2.2834 32 1 7.0003 -0.3246 2.9977 33 1 7.8932 1.9138 4.7936 34 1 3.9372 -1.9023 2.9715 35 1 3.0090 -0.6819 3.8868 36 1 3.1370 0.8611 -2.1277 37 1 3.7591 -0.6990 -4.0411 38 1 2.8043 -3.0407 -3.8311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:53 Heat of formation + Delta-G solvation = -53.669010 kcal Electronic energy + Delta-G solvation = -21941.980786 eV Core-core repulsion = 18682.961287 eV Total energy + Delta-G solvation = -3259.019499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.80533 -37.91294 -37.24058 -34.34526 -33.64186 -32.20965 -29.72113 -28.59248 -28.38947 -25.64400 -24.37877 -23.09604 -21.96621 -19.76733 -19.37613 -18.88945 -17.37492 -17.15435 -16.43035 -15.63821 -15.12148 -14.96269 -14.82994 -14.26199 -13.84980 -13.61359 -13.07710 -12.99788 -12.76978 -12.38879 -12.23013 -12.15834 -11.94981 -11.68442 -11.60012 -11.45096 -11.35432 -11.21138 -10.91485 -10.66544 -10.56758 -10.48816 -10.13997 -9.56609 -9.38748 -8.69842 -8.59252 -8.42233 -8.24417 -8.03242 -6.31403 -4.38458 0.97495 1.64872 2.06373 2.69279 3.01039 3.19003 3.26337 3.29570 3.50449 4.25151 4.66712 4.80428 4.97494 4.99971 5.06694 5.22311 5.45862 5.53384 5.55778 5.67783 5.73371 5.83940 5.91323 5.99350 6.06539 6.17028 6.19595 6.27311 6.44166 6.45454 6.66313 6.86856 6.94008 7.25729 7.31068 7.71089 7.99609 8.07040 8.56080 8.64254 9.29113 9.39759 10.76607 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.027857 B = 0.004097 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.909949 B = 6831.818715 C = 7177.460936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.039 4.039 3 H 0.105 0.895 4 C 0.527 3.473 5 O -0.546 6.546 6 N -0.603 5.603 7 C 0.096 3.904 8 C -0.137 4.137 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.535 4.535 12 H 0.064 0.936 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.903 3.097 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.272 1.272 19 C 0.122 3.878 20 C -0.164 4.164 21 C -0.135 4.135 22 C -0.134 4.134 23 C -0.225 4.225 24 S 0.129 5.871 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.383 0.617 33 H 0.268 0.732 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.622 0.330 -13.688 15.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.062 4.062 3 H 0.123 0.877 4 C 0.314 3.686 5 O -0.425 6.425 6 N -0.335 5.335 7 C -0.027 4.027 8 C -0.175 4.175 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.573 4.573 12 H 0.082 0.918 13 C -0.129 4.129 14 N -0.537 5.537 15 Si 0.730 3.270 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C 0.000 4.000 20 C -0.282 4.282 21 C -0.166 4.166 22 C -0.165 4.165 23 C -0.361 4.361 24 S 0.393 5.607 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.234 0.766 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.119 -1.721 -12.935 15.919 hybrid contribution 1.612 1.922 0.330 2.530 sum -7.507 0.201 -12.605 14.673 Atomic orbital electron populations 1.21717 0.91533 1.03666 1.02234 1.19844 0.97870 0.99467 0.89028 0.87703 1.19930 0.80138 0.83993 0.84556 1.90661 1.57478 1.28914 1.65456 1.48626 1.21269 1.38834 1.24740 1.22529 0.91985 0.89495 0.98690 1.23326 1.00091 1.00280 0.93838 1.19446 0.82122 0.85632 0.92016 1.86129 1.18808 1.47904 1.86605 1.21525 1.09147 1.34351 0.92283 0.91757 1.24974 0.95115 0.94287 0.98552 1.69642 1.12277 1.37136 1.34604 0.86412 0.78436 0.77734 0.84384 1.20367 1.21038 1.19714 1.22089 0.95504 0.98453 0.83919 1.24094 1.05900 0.97703 1.00508 1.20124 1.00250 1.01666 0.94522 1.20101 1.02797 0.93183 1.00420 1.25728 1.06342 1.01558 1.02495 1.84593 1.50494 1.09201 1.16429 0.91105 0.91594 0.91600 0.92211 0.91795 0.91409 0.89450 0.76589 0.92165 0.92044 0.90981 0.84208 0.84409 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.83 37.16 0.33 -1.34 16 2 C -0.04 -0.55 2.70 -92.92 -0.25 -0.81 16 3 H 0.11 1.31 6.39 -51.93 -0.33 0.98 16 4 C 0.53 9.87 6.75 -10.98 -0.07 9.80 16 5 O -0.55 -11.77 16.48 5.55 0.09 -11.68 16 6 N -0.60 -11.96 3.33 -170.52 -0.57 -12.52 16 7 C 0.10 1.71 6.72 -2.53 -0.02 1.70 16 8 C -0.14 -2.88 5.57 -24.58 -0.14 -3.02 16 9 C 0.25 5.95 0.85 -89.93 -0.08 5.87 16 10 O -0.59 -14.75 13.06 -35.23 -0.46 -15.21 16 11 C -0.53 -13.89 8.22 -34.44 -0.28 -14.18 16 12 H 0.06 1.68 7.56 -52.49 -0.40 1.28 16 13 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 14 N -0.90 -22.77 10.69 55.43 0.59 -22.17 16 15 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 C 0.12 2.77 6.23 -3.06 -0.02 2.75 16 20 C -0.16 -2.26 5.08 -36.00 -0.18 -2.45 16 21 C -0.14 -1.64 10.01 -41.21 -0.41 -2.05 16 22 C -0.13 -1.50 10.18 -41.21 -0.42 -1.92 16 23 C -0.23 -2.56 11.23 29.04 0.33 -2.24 16 24 S 0.13 1.75 23.15 -107.50 -2.49 -0.73 16 25 H 0.07 0.98 7.69 -51.93 -0.40 0.58 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.88 6.64 -51.92 -0.34 0.53 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 31 H 0.09 1.91 7.64 -51.93 -0.40 1.52 16 32 H 0.38 9.63 7.28 45.56 0.33 9.96 16 33 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 34 H 0.06 1.47 8.07 -51.93 -0.42 1.05 16 35 H 0.07 1.65 7.66 -51.93 -0.40 1.25 16 36 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 329.08 15.07 4.96 4.96 Total: -1.00 -28.59 329.08 -8.65 -37.24 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -4.44 Total: 11.17 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -1.31 Total: -6.12 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.03 Total: -34.70 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.37 Total: -26.89 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.49 Total: -0.73 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.59 -8.65 -37.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.425 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds