Wall clock time and date at job start Tue Mar 31 2020 07:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47265 * 2 1 4 4 C 1.50706 * 109.47264 * 119.99712 * 2 1 3 5 5 O 1.21283 * 119.99854 * 33.30054 * 4 2 1 6 6 N 1.34771 * 120.00050 * 213.30513 * 4 2 1 7 7 C 1.47427 * 125.65287 * 354.74394 * 6 4 2 8 8 C 1.54905 * 104.83698 * 155.90706 * 7 6 4 9 9 C 1.55163 * 101.57784 * 37.01298 * 8 7 6 10 10 O 1.42895 * 110.71840 * 82.86315 * 9 8 7 11 11 C 1.50699 * 110.71938 * 205.95774 * 9 8 7 12 12 H 1.07999 * 120.00181 * 116.15587 * 11 9 8 13 13 C 1.37884 * 120.00143 * 296.15874 * 11 9 8 14 14 N 1.31512 * 119.99602 * 0.02562 * 13 11 9 15 15 Si 1.86792 * 120.00099 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47232 * 89.99803 * 15 13 11 17 17 H 1.48504 * 109.47051 * 209.99586 * 15 13 11 18 18 H 1.48499 * 109.47589 * 329.99781 * 15 13 11 19 19 C 1.47022 * 125.64935 * 174.78816 * 6 4 2 20 20 C 1.50700 * 109.47241 * 239.99734 * 2 1 3 21 21 C 1.33389 * 125.20226 * 120.00267 * 20 2 1 22 22 C 1.38428 * 114.91892 * 179.97438 * 21 20 2 23 23 C 1.33389 * 114.91927 * 359.97438 * 22 21 20 24 24 S 1.75880 * 109.59626 * 359.75576 * 23 22 21 25 25 H 1.08999 * 109.47127 * 184.51054 * 1 2 3 26 26 H 1.09001 * 109.46925 * 304.51022 * 1 2 3 27 27 H 1.09001 * 109.46841 * 64.50869 * 1 2 3 28 28 H 1.09008 * 110.35948 * 37.07103 * 7 6 4 29 29 H 1.08997 * 110.37182 * 274.75480 * 7 6 4 30 30 H 1.09001 * 111.00670 * 278.94330 * 8 7 6 31 31 H 1.08998 * 111.04091 * 155.10063 * 8 7 6 32 32 H 0.96697 * 114.00653 * 61.45647 * 10 9 8 33 33 H 0.96999 * 119.99944 * 179.97438 * 14 13 11 34 34 H 1.09005 * 109.87974 * 61.60640 * 19 6 4 35 35 H 1.08998 * 109.88629 * 300.44481 * 19 6 4 36 36 H 1.07993 * 122.54351 * 359.97438 * 21 20 2 37 37 H 1.08000 * 122.53845 * 180.02562 * 22 21 20 38 38 H 1.08002 * 125.19965 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.4068 -1.6419 1.6908 6 7 3.1767 -0.3104 1.8195 7 6 4.0887 0.7289 1.3082 8 6 4.8466 1.2415 2.5581 9 6 5.0267 -0.0674 3.3716 10 8 6.1627 -0.7992 2.9070 11 6 5.1534 0.2325 4.8430 12 1 4.4040 -0.1250 5.5336 13 6 6.2263 0.9634 5.3077 14 7 7.1386 1.3993 4.4668 15 14 6.3838 1.3346 7.1316 16 1 7.1540 0.2506 7.7927 17 1 7.0917 2.6272 7.3144 18 1 5.0309 1.4210 7.7379 19 6 3.7228 -0.8389 3.0781 20 6 2.0323 -0.7105 -1.2304 21 6 2.8025 -0.1647 -2.1729 22 6 3.1405 -1.0129 -3.2133 23 6 2.6452 -2.2476 -3.1154 24 16 1.7001 -2.3886 -1.6389 25 1 -0.3633 -1.0245 0.0808 26 1 -0.3633 0.5822 0.8468 27 1 -0.3633 0.4423 -0.9276 28 1 3.5214 1.5391 0.8497 29 1 4.7876 0.3004 0.5899 30 1 4.2462 1.9649 3.1098 31 1 5.8119 1.6667 2.2834 32 1 7.0003 -0.3246 2.9977 33 1 7.8932 1.9138 4.7936 34 1 3.9372 -1.9023 2.9715 35 1 3.0090 -0.6819 3.8868 36 1 3.1370 0.8611 -2.1277 37 1 3.7591 -0.6990 -4.0411 38 1 2.8043 -3.0407 -3.8311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:52 Heat of formation + Delta-G solvation = -71.715761 kcal Electronic energy + Delta-G solvation = -21942.763352 eV Core-core repulsion = 18682.961287 eV Total energy + Delta-G solvation = -3259.802064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29667 -39.27808 -38.55079 -36.12772 -34.77260 -34.19112 -31.42268 -30.10946 -29.51321 -27.36789 -25.55874 -24.40604 -23.34391 -21.52676 -20.35820 -20.26783 -19.18221 -18.56080 -17.73256 -16.94568 -16.78637 -16.49733 -16.21950 -16.04623 -15.28814 -14.88052 -14.59775 -14.23565 -13.93472 -13.72070 -13.51600 -13.49398 -13.30406 -13.20607 -13.14484 -12.93728 -12.68970 -12.63938 -12.51278 -12.28201 -12.26052 -11.98489 -11.55004 -11.30340 -10.96444 -10.62663 -10.15491 -9.66650 -9.57889 -9.41806 -8.25646 -6.39568 0.04115 0.69705 1.14821 1.41308 1.44708 1.51334 1.53086 1.84369 2.04674 2.39683 3.00020 3.48359 3.63878 3.86226 3.95094 3.99783 4.16657 4.25907 4.27104 4.42861 4.57247 4.60781 4.69698 4.71897 4.80812 4.85479 4.90167 5.14845 5.15902 5.19274 5.26820 5.36966 5.44784 5.51719 5.59937 5.75703 6.07088 6.55178 6.64385 7.07136 7.30854 7.41747 8.80910 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.027857 B = 0.004097 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.909949 B = 6831.818715 C = 7177.460936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.028 4.028 3 H 0.131 0.869 4 C 0.522 3.478 5 O -0.582 6.582 6 N -0.608 5.608 7 C 0.105 3.895 8 C -0.126 4.126 9 C 0.236 3.764 10 O -0.595 6.595 11 C -0.564 4.564 12 H 0.050 0.950 13 C 0.040 3.960 14 N -0.906 5.906 15 Si 0.958 3.042 16 H -0.279 1.279 17 H -0.275 1.275 18 H -0.274 1.274 19 C 0.128 3.872 20 C -0.186 4.186 21 C -0.123 4.123 22 C -0.139 4.139 23 C -0.214 4.214 24 S 0.065 5.935 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.381 0.619 33 H 0.273 0.727 34 H 0.037 0.963 35 H 0.060 0.940 36 H 0.166 0.834 37 H 0.169 0.831 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.396 2.134 -15.562 17.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.051 4.051 3 H 0.148 0.852 4 C 0.311 3.689 5 O -0.463 6.463 6 N -0.340 5.340 7 C -0.016 4.016 8 C -0.165 4.165 9 C 0.196 3.804 10 O -0.404 6.404 11 C -0.603 4.603 12 H 0.069 0.931 13 C -0.162 4.162 14 N -0.545 5.545 15 Si 0.784 3.216 16 H -0.205 1.205 17 H -0.200 1.200 18 H -0.199 1.199 19 C 0.005 3.995 20 C -0.304 4.304 21 C -0.154 4.154 22 C -0.169 4.169 23 C -0.349 4.349 24 S 0.329 5.671 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.231 0.769 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.183 0.817 37 H 0.186 0.814 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.896 0.097 -14.834 17.297 hybrid contribution 1.575 1.305 0.870 2.222 sum -7.321 1.401 -13.964 15.829 Atomic orbital electron populations 1.21726 0.90482 1.02782 1.03835 1.19845 0.98693 0.99907 0.86654 0.85152 1.20883 0.79080 0.83549 0.85340 1.90638 1.58325 1.30620 1.66705 1.48713 1.22057 1.39315 1.23872 1.22538 0.91971 0.90008 0.97097 1.23101 1.00113 0.98494 0.94777 1.19589 0.81873 0.87147 0.91781 1.86117 1.19097 1.48549 1.86653 1.21732 1.09646 1.35435 0.93444 0.93132 1.25552 0.94717 0.93944 1.01943 1.69691 1.12248 1.36798 1.35720 0.85558 0.78144 0.77697 0.80211 1.20531 1.20002 1.19900 1.21792 0.95120 0.97100 0.85470 1.24051 1.07880 0.97271 1.01161 1.20515 0.98307 1.02833 0.93729 1.20485 1.02708 0.92751 1.00971 1.26034 1.05029 1.02576 1.01262 1.84850 1.52385 1.10883 1.19005 0.93106 0.91268 0.88812 0.87810 0.91449 0.91988 0.90203 0.76881 0.91791 0.94451 0.92148 0.81684 0.81408 0.79714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.83 71.98 0.64 -2.41 16 2 C -0.03 -0.75 2.70 -12.29 -0.03 -0.78 16 3 H 0.13 2.72 6.39 -2.39 -0.02 2.70 16 4 C 0.52 19.33 6.75 87.66 0.59 19.92 16 5 O -0.58 -25.71 16.48 -3.04 -0.05 -25.76 16 6 N -0.61 -23.81 3.33 -811.79 -2.70 -26.51 16 7 C 0.11 3.55 6.72 86.85 0.58 4.13 16 8 C -0.13 -5.23 5.57 31.99 0.18 -5.05 16 9 C 0.24 11.48 0.85 -10.35 -0.01 11.47 16 10 O -0.59 -30.48 13.06 -148.98 -1.95 -32.43 16 11 C -0.56 -29.88 8.22 25.60 0.21 -29.67 16 12 H 0.05 2.73 7.56 -2.91 -0.02 2.71 16 13 C 0.04 2.03 5.29 84.66 0.45 2.48 16 14 N -0.91 -45.57 10.69 21.45 0.23 -45.35 16 15 Si 0.96 41.05 29.54 68.60 2.03 43.08 16 16 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 C 0.13 6.00 6.23 86.73 0.54 6.54 16 20 C -0.19 -4.72 5.08 24.59 0.12 -4.60 16 21 C -0.12 -2.52 10.01 21.22 0.21 -2.31 16 22 C -0.14 -2.58 10.18 21.22 0.22 -2.37 16 23 C -0.21 -4.32 11.23 66.72 0.75 -3.57 16 24 S 0.07 1.74 23.15 -56.49 -1.31 0.43 16 25 H 0.05 1.39 7.69 -2.39 -0.02 1.37 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.10 2.60 6.64 -2.38 -0.02 2.59 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.06 2.61 8.04 -2.39 -0.02 2.59 16 31 H 0.08 3.42 7.64 -2.39 -0.02 3.40 16 32 H 0.38 19.39 7.28 -74.06 -0.54 18.85 16 33 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 34 H 0.04 1.88 8.07 -2.38 -0.02 1.86 16 35 H 0.06 2.90 7.66 -2.39 -0.02 2.88 16 36 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -63.03 329.08 1.24 -61.79 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.54 Total: 30.95 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 4.45 Total: -6.21 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -2.47 Total: -71.85 kcal Atomic # 8 Polarization: -56.19 SS G_CDS: -2.00 Total: -58.19 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -1.31 Total: 0.43 kcal Total: -63.03 1.24 -61.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.922 kcal (2) G-P(sol) polarization free energy of solvation -63.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds