Wall clock time and date at job start Tue Mar 31 2020 07:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76195 * 103.00058 * 2 1 4 4 C 1.39176 * 119.93117 * 0.02562 * 3 2 1 5 5 C 1.37988 * 120.31043 * 179.97438 * 4 3 2 6 6 C 1.38697 * 120.17776 * 0.02562 * 5 4 3 7 7 O 1.35751 * 120.06572 * 179.97438 * 6 5 4 8 8 C 1.40091 * 119.85889 * 359.97438 * 6 5 4 9 9 C 1.47547 * 120.15088 * 180.02562 * 8 6 5 10 10 O 1.21588 * 120.00011 * 48.44468 * 9 8 6 11 11 N 1.34777 * 119.99697 * 228.44287 * 9 8 6 12 12 C 1.46497 * 119.99980 * 355.60692 * 11 9 8 13 13 C 1.46501 * 119.99822 * 175.60984 * 11 9 8 14 14 H 1.08990 * 109.47037 * 359.97438 * 13 11 9 15 15 C 1.53003 * 109.47204 * 120.00061 * 13 11 9 16 16 C 1.50703 * 109.46946 * 239.99622 * 13 11 9 17 17 H 1.07998 * 119.99975 * 0.02562 * 16 13 11 18 18 C 1.37881 * 119.99918 * 180.02562 * 16 13 11 19 19 N 1.31511 * 119.99696 * 359.97438 * 18 16 13 20 20 Si 1.86791 * 119.99885 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47334 * 269.99909 * 20 18 16 22 22 H 1.48499 * 109.47440 * 29.99980 * 20 18 16 23 23 H 1.48503 * 109.46996 * 149.99821 * 20 18 16 24 24 C 1.38470 * 119.93260 * 180.27745 * 3 2 1 25 25 H 1.08992 * 109.47283 * 59.99470 * 1 2 3 26 26 H 1.09003 * 109.47185 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47013 * 299.99785 * 1 2 3 28 28 H 1.07994 * 119.84292 * 359.97438 * 4 3 2 29 29 H 1.08009 * 119.91001 * 179.97438 * 5 4 3 30 30 H 0.96703 * 113.99446 * 270.01240 * 7 6 5 31 31 H 1.08998 * 109.47399 * 274.81167 * 12 11 9 32 32 H 1.08998 * 109.47500 * 34.80948 * 12 11 9 33 33 H 1.09002 * 109.47402 * 154.81655 * 12 11 9 34 34 H 1.09003 * 109.47421 * 59.99546 * 15 13 11 35 35 H 1.08999 * 109.47118 * 179.97438 * 15 13 11 36 36 H 1.09008 * 109.46858 * 299.99798 * 15 13 11 37 37 H 0.97003 * 119.99486 * 179.97438 * 19 18 16 38 38 H 1.08001 * 120.08810 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1914 2.6647 0.0005 5 6 1.4929 4.0113 0.0011 6 6 2.8153 4.4296 0.0005 7 8 3.1093 5.7549 0.0006 8 6 3.8467 3.4817 0.0000 9 6 5.2557 3.9196 0.0000 10 8 5.6291 4.7667 0.7883 11 7 6.1289 3.3805 -0.8738 12 6 5.7033 2.2925 -1.7577 13 6 7.5036 3.8826 -0.9396 14 1 7.6323 4.6852 -0.2136 15 6 8.4774 2.7460 -0.6221 16 6 7.7803 4.4090 -2.3243 17 1 7.0092 4.3735 -3.0796 18 6 9.0180 4.9359 -2.6269 19 7 9.9568 4.9795 -1.7070 20 14 9.3608 5.5890 -4.3430 21 1 9.8952 4.4940 -5.1919 22 1 8.1016 6.1060 -4.9366 23 1 10.3582 6.6865 -4.2648 24 6 3.5350 2.1201 -0.0058 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.1599 2.3449 0.0005 29 1 0.6970 4.7414 0.0011 30 1 3.1939 6.1390 -0.8829 31 1 5.8027 1.3406 -1.2361 32 1 4.6623 2.4429 -2.0438 33 1 6.3281 2.2843 -2.6508 34 1 8.3485 1.9434 -1.3484 35 1 9.5002 3.1194 -0.6715 36 1 8.2772 2.3652 0.3795 37 1 10.8277 5.3499 -1.9200 38 1 4.3252 1.3838 -0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597146035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:38 Heat of formation + Delta-G solvation = -43.598927 kcal Electronic energy + Delta-G solvation = -21679.424518 eV Core-core repulsion = 18420.841691 eV Total energy + Delta-G solvation = -3258.582827 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21590 -38.24255 -36.66132 -35.26127 -33.02054 -31.50846 -30.14099 -29.41837 -28.76797 -26.20970 -25.22955 -23.79841 -22.78839 -21.17976 -19.09770 -18.22108 -17.31978 -16.55931 -16.27094 -15.92883 -15.50521 -15.30362 -14.60277 -14.52392 -14.15445 -14.06311 -13.80251 -13.15925 -13.01414 -12.61183 -12.59280 -12.53617 -12.23503 -11.92731 -11.63061 -11.40429 -11.07998 -10.84398 -10.73189 -10.66822 -10.39444 -10.26610 -10.18686 -9.58661 -9.22068 -9.12880 -8.89192 -8.43806 -7.61926 -7.48527 -6.08301 -4.16719 0.87494 1.09687 1.29845 2.18153 3.13161 3.25488 3.32670 3.34805 3.63216 3.94392 4.22086 4.38161 4.68654 4.73874 4.74269 4.76081 5.07638 5.22869 5.27263 5.35119 5.48884 5.70319 5.80014 5.93137 5.96795 6.04542 6.25907 6.36775 6.52671 6.76621 6.84838 7.06572 7.41340 7.52060 7.70282 7.74913 8.00990 8.18076 8.49019 8.80867 9.01651 9.49739 10.97049 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021397 B = 0.004186 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.303763 B = 6686.933913 C = 7143.855155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.114 6.114 3 C -0.104 4.104 4 C -0.106 4.106 5 C -0.134 4.134 6 C 0.151 3.849 7 O -0.481 6.481 8 C -0.121 4.121 9 C 0.546 3.454 10 O -0.528 6.528 11 N -0.585 5.585 12 C 0.081 3.919 13 C 0.258 3.742 14 H 0.064 0.936 15 C -0.146 4.146 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.886 5.886 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.275 1.275 23 H -0.285 1.285 24 C -0.054 4.054 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.128 0.872 29 H 0.136 0.864 30 H 0.393 0.607 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.030 0.970 35 H 0.094 0.906 36 H 0.012 0.988 37 H 0.264 0.736 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.862 -8.810 0.144 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.127 5.873 3 C -0.216 4.216 4 C -0.130 4.130 5 C -0.154 4.154 6 C 0.102 3.898 7 O -0.291 6.291 8 C -0.127 4.127 9 C 0.331 3.669 10 O -0.406 6.406 11 N -0.317 5.317 12 C -0.063 4.063 13 C 0.158 3.842 14 H 0.082 0.918 15 C -0.205 4.205 16 C -0.566 4.566 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.524 5.524 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.200 1.200 23 H -0.211 1.211 24 C -0.078 4.078 25 H 0.103 0.897 26 H 0.126 0.874 27 H 0.102 0.898 28 H 0.146 0.854 29 H 0.153 0.847 30 H 0.250 0.750 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.112 0.888 36 H 0.031 0.969 37 H 0.074 0.926 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.792 -9.414 1.180 20.164 hybrid contribution -0.635 1.443 -1.511 2.183 sum -18.427 -7.971 -0.330 20.080 Atomic orbital electron populations 1.23675 0.95085 1.07048 1.05621 1.85565 1.06002 1.02714 1.92989 1.21520 0.96242 0.96726 1.07158 1.21060 0.98202 0.92432 1.01327 1.21237 0.95733 0.95848 1.02614 1.18428 0.90543 0.83665 0.97136 1.84835 1.92525 1.18454 1.33303 1.20606 0.95189 0.93288 1.03570 1.17974 0.84342 0.82458 0.82109 1.90782 1.78444 1.32309 1.39064 1.48213 1.13463 1.34759 1.35220 1.21757 0.99761 0.89217 0.95529 1.18985 0.73921 0.93225 0.98033 0.91803 1.22089 1.04115 0.98045 0.96248 1.21304 0.98114 1.40833 0.96330 0.92245 1.24891 0.95956 0.95501 0.97377 1.69884 1.04370 1.45159 1.33006 0.86487 0.78118 0.78639 0.84089 1.20597 1.19961 1.21083 1.20958 0.94779 0.94637 0.97445 0.89729 0.87434 0.89765 0.85405 0.84654 0.74986 0.93844 0.92741 0.89813 0.95112 0.88765 0.96925 0.92636 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.14 101.05 0.92 0.01 16 2 S -0.11 -1.17 22.55 -107.50 -2.42 -3.59 16 3 C -0.10 -1.29 6.10 -39.15 -0.24 -1.53 16 4 C -0.11 -1.16 9.35 -39.33 -0.37 -1.53 16 5 C -0.13 -1.62 9.97 -39.50 -0.39 -2.01 16 6 C 0.15 2.35 6.69 -38.72 -0.26 2.09 16 7 O -0.48 -7.77 12.52 -29.06 -0.36 -8.13 16 8 C -0.12 -2.10 4.92 -104.87 -0.52 -2.62 16 9 C 0.55 11.97 6.96 -12.46 -0.09 11.88 16 10 O -0.53 -13.82 15.84 -4.82 -0.08 -13.90 16 11 N -0.59 -12.76 2.75 -176.49 -0.49 -13.25 16 12 C 0.08 1.41 7.99 59.85 0.48 1.89 16 13 C 0.26 6.65 2.63 -69.08 -0.18 6.47 16 14 H 0.06 1.91 6.91 -51.93 -0.36 1.55 16 15 C -0.15 -3.55 8.97 37.16 0.33 -3.21 16 16 C -0.53 -14.13 7.96 -34.44 -0.27 -14.41 16 17 H 0.06 1.56 7.42 -52.49 -0.39 1.17 16 18 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 19 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 20 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 24 C -0.05 -0.80 7.49 -38.96 -0.29 -1.09 16 25 H 0.08 0.46 7.74 -51.93 -0.40 0.06 16 26 H 0.11 0.51 8.14 -51.92 -0.42 0.08 16 27 H 0.08 0.47 7.74 -51.92 -0.40 0.07 16 28 H 0.13 1.01 5.84 -52.49 -0.31 0.70 16 29 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.39 4.69 9.06 45.56 0.41 5.11 16 31 H 0.04 0.67 7.05 -51.93 -0.37 0.30 16 32 H 0.05 0.83 6.23 -51.93 -0.32 0.51 16 33 H 0.08 1.52 7.10 -51.93 -0.37 1.15 16 34 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 35 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 36 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.14 2.01 6.23 -52.49 -0.33 1.69 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -32.98 327.02 -7.73 -40.71 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -3.95 Total: 4.20 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -0.97 Total: -2.39 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.14 Total: -37.65 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.44 Total: -22.03 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -2.42 Total: -3.59 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.98 -7.73 -40.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597146035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.888 kcal (2) G-P(sol) polarization free energy of solvation -32.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds