Wall clock time and date at job start Tue Mar 31 2020 07:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76195 * 103.00058 * 2 1 4 4 C 1.39176 * 119.93117 * 0.02562 * 3 2 1 5 5 C 1.37988 * 120.31043 * 179.97438 * 4 3 2 6 6 C 1.38697 * 120.17776 * 0.02562 * 5 4 3 7 7 O 1.35751 * 120.06572 * 179.97438 * 6 5 4 8 8 C 1.40091 * 119.85889 * 359.97438 * 6 5 4 9 9 C 1.47547 * 120.15088 * 180.02562 * 8 6 5 10 10 O 1.21588 * 120.00011 * 48.44468 * 9 8 6 11 11 N 1.34777 * 119.99697 * 228.44287 * 9 8 6 12 12 C 1.46497 * 119.99980 * 355.60692 * 11 9 8 13 13 C 1.46501 * 119.99822 * 175.60984 * 11 9 8 14 14 H 1.08990 * 109.47037 * 359.97438 * 13 11 9 15 15 C 1.53003 * 109.47204 * 120.00061 * 13 11 9 16 16 C 1.50703 * 109.46946 * 239.99622 * 13 11 9 17 17 H 1.07998 * 119.99975 * 0.02562 * 16 13 11 18 18 C 1.37881 * 119.99918 * 180.02562 * 16 13 11 19 19 N 1.31511 * 119.99696 * 359.97438 * 18 16 13 20 20 Si 1.86791 * 119.99885 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47334 * 269.99909 * 20 18 16 22 22 H 1.48499 * 109.47440 * 29.99980 * 20 18 16 23 23 H 1.48503 * 109.46996 * 149.99821 * 20 18 16 24 24 C 1.38470 * 119.93260 * 180.27745 * 3 2 1 25 25 H 1.08992 * 109.47283 * 59.99470 * 1 2 3 26 26 H 1.09003 * 109.47185 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47013 * 299.99785 * 1 2 3 28 28 H 1.07994 * 119.84292 * 359.97438 * 4 3 2 29 29 H 1.08009 * 119.91001 * 179.97438 * 5 4 3 30 30 H 0.96703 * 113.99446 * 270.01240 * 7 6 5 31 31 H 1.08998 * 109.47399 * 274.81167 * 12 11 9 32 32 H 1.08998 * 109.47500 * 34.80948 * 12 11 9 33 33 H 1.09002 * 109.47402 * 154.81655 * 12 11 9 34 34 H 1.09003 * 109.47421 * 59.99546 * 15 13 11 35 35 H 1.08999 * 109.47118 * 179.97438 * 15 13 11 36 36 H 1.09008 * 109.46858 * 299.99798 * 15 13 11 37 37 H 0.97003 * 119.99486 * 179.97438 * 19 18 16 38 38 H 1.08001 * 120.08810 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1914 2.6647 0.0005 5 6 1.4929 4.0113 0.0011 6 6 2.8153 4.4296 0.0005 7 8 3.1093 5.7549 0.0006 8 6 3.8467 3.4817 0.0000 9 6 5.2557 3.9196 0.0000 10 8 5.6291 4.7667 0.7883 11 7 6.1289 3.3805 -0.8738 12 6 5.7033 2.2925 -1.7577 13 6 7.5036 3.8826 -0.9396 14 1 7.6323 4.6852 -0.2136 15 6 8.4774 2.7460 -0.6221 16 6 7.7803 4.4090 -2.3243 17 1 7.0092 4.3735 -3.0796 18 6 9.0180 4.9359 -2.6269 19 7 9.9568 4.9795 -1.7070 20 14 9.3608 5.5890 -4.3430 21 1 9.8952 4.4940 -5.1919 22 1 8.1016 6.1060 -4.9366 23 1 10.3582 6.6865 -4.2648 24 6 3.5350 2.1201 -0.0058 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.1599 2.3449 0.0005 29 1 0.6970 4.7414 0.0011 30 1 3.1939 6.1390 -0.8829 31 1 5.8027 1.3406 -1.2361 32 1 4.6623 2.4429 -2.0438 33 1 6.3281 2.2843 -2.6508 34 1 8.3485 1.9434 -1.3484 35 1 9.5002 3.1194 -0.6715 36 1 8.2772 2.3652 0.3795 37 1 10.8277 5.3499 -1.9200 38 1 4.3252 1.3838 -0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597146035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:37 Heat of formation + Delta-G solvation = -65.857574 kcal Electronic energy + Delta-G solvation = -21680.389725 eV Core-core repulsion = 18420.841691 eV Total energy + Delta-G solvation = -3259.548034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.55346 -39.73019 -37.80751 -37.10557 -34.90438 -32.85865 -31.15212 -30.94405 -29.60650 -27.74940 -27.32542 -25.13700 -23.85375 -22.79523 -20.66032 -19.36477 -18.73292 -18.31779 -17.80796 -17.12790 -17.02382 -16.54812 -16.19859 -15.73007 -15.47119 -15.10166 -14.73550 -14.60065 -14.36541 -13.96637 -13.76887 -13.56516 -13.50713 -13.37138 -13.07713 -12.99536 -12.82183 -12.71352 -12.66918 -12.22900 -12.13699 -11.79554 -11.23104 -11.17520 -10.78090 -10.56710 -10.51715 -10.10050 -9.40568 -8.33175 -8.15828 -6.33039 -0.22009 0.06735 0.53207 1.41586 1.43186 1.50552 1.53141 1.72118 2.21186 2.44063 2.49641 3.12348 3.16516 3.50598 3.75119 4.03261 4.25208 4.35554 4.36059 4.38022 4.44351 4.58912 4.70021 4.76292 4.87017 4.88678 4.94281 4.95845 5.02595 5.03436 5.20805 5.44286 5.53830 5.56516 5.63743 5.99833 6.12945 6.69248 6.72641 6.74471 7.24380 7.41804 8.89132 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021397 B = 0.004186 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.303763 B = 6686.933913 C = 7143.855155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.137 6.137 3 C -0.102 4.102 4 C -0.089 4.089 5 C -0.122 4.122 6 C 0.131 3.869 7 O -0.503 6.503 8 C -0.149 4.149 9 C 0.541 3.459 10 O -0.588 6.588 11 N -0.590 5.590 12 C 0.083 3.917 13 C 0.262 3.738 14 H 0.008 0.992 15 C -0.132 4.132 16 C -0.539 4.539 17 H 0.063 0.937 18 C 0.015 3.985 19 N -0.918 5.918 20 Si 0.969 3.031 21 H -0.267 1.267 22 H -0.269 1.269 23 H -0.286 1.286 24 C -0.060 4.060 25 H 0.100 0.900 26 H 0.126 0.874 27 H 0.096 0.904 28 H 0.170 0.830 29 H 0.167 0.833 30 H 0.405 0.595 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.017 0.983 37 H 0.265 0.735 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.309 -10.516 -1.371 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.105 5.895 3 C -0.214 4.214 4 C -0.113 4.113 5 C -0.142 4.142 6 C 0.083 3.917 7 O -0.316 6.316 8 C -0.154 4.154 9 C 0.329 3.671 10 O -0.470 6.470 11 N -0.320 5.320 12 C -0.060 4.060 13 C 0.160 3.840 14 H 0.026 0.974 15 C -0.191 4.191 16 C -0.577 4.577 17 H 0.081 0.919 18 C -0.184 4.184 19 N -0.557 5.557 20 Si 0.793 3.207 21 H -0.192 1.192 22 H -0.193 1.193 23 H -0.212 1.212 24 C -0.084 4.084 25 H 0.118 0.882 26 H 0.145 0.855 27 H 0.115 0.885 28 H 0.187 0.813 29 H 0.185 0.815 30 H 0.264 0.736 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.268 -11.171 -0.364 24.026 hybrid contribution 0.297 1.881 -0.989 2.146 sum -20.972 -9.289 -1.353 22.977 Atomic orbital electron populations 1.23854 0.91011 1.08815 1.06996 1.85751 1.10446 1.00784 1.92527 1.21713 0.95482 0.98547 1.05695 1.21549 0.99778 0.91486 0.98439 1.21514 0.94554 0.97171 1.00929 1.18744 0.91700 0.82978 0.98291 1.84792 1.92817 1.19238 1.34726 1.20275 0.92391 0.95083 1.07679 1.18713 0.86213 0.81311 0.80831 1.90728 1.79895 1.35029 1.41314 1.48182 1.12188 1.35654 1.35996 1.21934 1.00811 0.88608 0.94598 1.18599 0.76660 0.92426 0.96287 0.97374 1.21886 1.02288 0.97874 0.97046 1.21533 0.98410 1.41179 0.96614 0.91919 1.25765 0.95694 0.95586 1.01384 1.70033 1.04753 1.45792 1.35075 0.85401 0.77931 0.78115 0.79236 1.19208 1.19345 1.21164 1.20884 0.96191 0.93206 0.98142 0.88158 0.85546 0.88475 0.81306 0.81547 0.73637 0.91627 0.90425 0.90540 0.93279 0.91126 0.96402 0.92566 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.14 113.37 1.04 0.01 16 2 S -0.14 -2.36 22.55 -56.49 -1.27 -3.64 16 3 C -0.10 -2.23 6.10 22.55 0.14 -2.10 16 4 C -0.09 -1.56 9.35 22.44 0.21 -1.35 16 5 C -0.12 -2.55 9.97 22.32 0.22 -2.33 16 6 C 0.13 4.03 6.69 22.83 0.15 4.18 16 7 O -0.50 -16.66 12.52 -81.10 -1.02 -17.68 16 8 C -0.15 -5.24 4.92 -20.02 -0.10 -5.34 16 9 C 0.54 24.97 6.96 86.70 0.60 25.58 16 10 O -0.59 -33.10 15.84 5.67 0.09 -33.01 16 11 N -0.59 -26.72 2.75 -830.56 -2.29 -29.01 16 12 C 0.08 2.85 7.99 127.77 1.02 3.87 16 13 C 0.26 14.18 2.63 44.25 0.12 14.30 16 14 H 0.01 0.54 6.91 -2.39 -0.02 0.52 16 15 C -0.13 -6.65 8.97 71.98 0.65 -6.00 16 16 C -0.54 -29.69 7.96 25.60 0.20 -29.49 16 17 H 0.06 3.33 7.42 -2.91 -0.02 3.31 16 18 C 0.02 0.85 5.30 84.66 0.45 1.30 16 19 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 20 Si 0.97 43.10 29.54 68.60 2.03 45.12 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 24 C -0.06 -1.72 7.49 22.67 0.17 -1.55 16 25 H 0.10 0.51 7.74 -2.39 -0.02 0.49 16 26 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.10 0.55 7.74 -2.39 -0.02 0.53 16 28 H 0.17 1.59 5.84 -2.91 -0.02 1.57 16 29 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.40 10.10 9.06 -74.06 -0.67 9.43 16 31 H 0.07 1.96 7.05 -2.39 -0.02 1.94 16 32 H 0.08 2.31 6.23 -2.39 -0.01 2.29 16 33 H 0.08 2.74 7.10 -2.39 -0.02 2.72 16 34 H 0.05 2.22 7.67 -2.39 -0.02 2.20 16 35 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 36 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.14 3.85 6.23 -2.91 -0.02 3.84 16 Total: -1.00 -76.72 327.02 3.08 -73.65 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.43 Total: 16.86 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 4.87 Total: 1.07 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -2.04 Total: -82.37 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -0.93 Total: -50.69 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -1.27 Total: -3.64 kcal Total: -76.72 3.08 -73.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597146035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.788 kcal (2) G-P(sol) polarization free energy of solvation -76.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds