Wall clock time and date at job start Tue Mar 31 2020 06:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21584 * 119.99640 * 359.97438 * 14 13 3 16 16 C 1.47547 * 120.00018 * 180.02562 * 14 13 3 17 17 C 1.39687 * 120.15593 * 359.71690 * 16 14 13 18 18 C 1.38469 * 119.81819 * 179.72667 * 17 16 14 19 19 S 1.76202 * 119.92777 * 180.27994 * 18 17 16 20 20 C 1.81397 * 102.99871 * 180.27592 * 19 18 17 21 21 C 1.39169 * 120.13917 * 0.54876 * 18 17 16 22 22 C 1.37990 * 120.31513 * 359.72961 * 21 18 17 23 23 C 1.38693 * 120.17128 * 359.97438 * 22 21 18 24 24 O 1.35748 * 120.06958 * 179.97438 * 23 22 21 25 25 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 27 27 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 28 28 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 29 29 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 32 32 H 1.07999 * 120.08594 * 0.02562 * 17 16 14 33 33 H 1.08999 * 109.47003 * 299.99440 * 20 19 18 34 34 H 1.09008 * 109.47272 * 59.99885 * 20 19 18 35 35 H 1.09007 * 109.47141 * 179.97438 * 20 19 18 36 36 H 1.08000 * 119.84376 * 179.70166 * 21 18 17 37 37 H 1.07994 * 119.91409 * 179.97438 * 22 21 18 38 38 H 0.96701 * 114.00258 * 270.02019 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3412 2.6325 0.4319 16 6 0.0452 3.3245 2.6276 17 6 0.9328 3.3587 3.7057 18 6 0.5617 3.9851 4.8835 19 16 1.6819 4.0364 6.2426 20 6 0.7447 4.9339 7.5102 21 6 -0.6962 4.5693 4.9980 22 6 -1.5797 4.5337 3.9386 23 6 -1.2192 3.9151 2.7508 24 8 -2.0901 3.8809 1.7101 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0694 -2.9455 31 1 2.2720 2.1230 1.9978 32 1 1.9077 2.9021 3.6190 33 1 0.4905 5.9267 7.1392 34 1 -0.1696 4.3871 7.7412 35 1 1.3499 5.0266 8.4120 36 1 -0.9825 5.0523 5.9205 37 1 -2.5544 4.9888 4.0347 38 1 -2.6697 3.1069 1.7075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597509282.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:02 Heat of formation + Delta-G solvation = -56.946685 kcal Electronic energy + Delta-G solvation = -21483.506437 eV Core-core repulsion = 18224.344807 eV Total energy + Delta-G solvation = -3259.161629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14598 -38.21503 -36.61924 -34.95321 -32.59943 -31.67786 -30.46288 -30.12469 -29.04011 -26.93687 -23.95729 -23.02003 -22.53311 -20.57573 -19.35058 -18.49787 -17.98505 -16.62459 -16.22006 -15.65675 -15.35091 -15.05767 -14.78224 -14.42722 -14.26913 -14.07280 -13.97719 -13.17364 -12.99605 -12.70112 -12.64539 -12.35486 -12.09534 -11.94104 -11.47824 -11.23904 -10.97824 -10.81081 -10.68937 -10.41589 -10.30278 -10.16976 -9.64086 -9.57362 -9.09563 -9.05270 -8.97949 -8.47755 -7.80545 -7.49641 -6.10615 -4.19987 0.78977 1.06466 1.29815 2.18068 3.08796 3.27616 3.32709 3.34166 3.97644 4.03635 4.28420 4.38388 4.66831 4.73329 4.73790 4.74905 5.19529 5.20761 5.33812 5.37717 5.50006 5.72126 5.89592 6.01724 6.27916 6.39426 6.45865 6.50770 6.66255 7.04652 7.20350 7.36917 7.44875 7.63119 7.74079 7.80497 7.91682 8.19152 8.66191 8.78925 9.12269 9.47135 10.94685 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.004462 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.451400 B = 6273.502239 C = 7589.829197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.541 3.459 15 O -0.526 6.526 16 C -0.132 4.132 17 C -0.052 4.052 18 C -0.106 4.106 19 S -0.112 6.112 20 C -0.146 4.146 21 C -0.102 4.102 22 C -0.139 4.139 23 C 0.159 3.841 24 O -0.474 6.474 25 H 0.022 0.978 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.100 0.900 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.386 0.614 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 6.572 17.797 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.351 5.351 14 C 0.326 3.674 15 O -0.405 6.405 16 C -0.138 4.138 17 C -0.077 4.077 18 C -0.218 4.218 19 S 0.129 5.871 20 C -0.315 4.315 21 C -0.126 4.126 22 C -0.159 4.159 23 C 0.111 3.889 24 O -0.285 6.285 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.155 0.845 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.922 6.540 16.954 19.445 hybrid contribution -0.188 0.083 0.328 0.387 sum -7.110 6.623 17.281 19.826 Atomic orbital electron populations 1.21837 0.98404 0.98001 1.01166 1.21939 0.92606 0.99758 1.02346 1.18809 0.94260 0.89157 0.80805 0.93132 1.21195 0.90663 1.39004 1.06503 0.92146 1.24872 0.98601 0.94754 0.95344 1.69884 1.35205 1.37449 1.09407 0.86516 0.84864 0.78336 0.77441 1.20142 1.21131 1.20169 1.46484 1.14328 1.55615 1.18626 1.17873 0.83340 0.79673 0.86513 1.90777 1.51250 1.59218 1.39219 1.20801 0.95629 1.01698 0.95637 1.20932 0.99329 0.97019 0.90386 1.21540 0.97753 1.04353 0.98161 1.85640 1.22572 1.71676 1.07188 1.23681 1.04096 1.03118 1.00614 1.21089 0.92530 0.99827 0.99184 1.21283 1.00657 1.02045 0.91944 1.18491 0.89125 0.94751 0.86576 1.84779 1.50590 1.48088 1.44996 0.95863 0.94442 0.93048 0.88175 0.95032 0.92508 0.78050 0.84465 0.89744 0.89772 0.87409 0.85398 0.84669 0.74880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.71 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.87 2.24 -69.09 -0.16 6.71 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -14.21 8.73 -34.44 -0.30 -14.51 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.73 11.28 55.43 0.63 -24.11 16 9 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.70 -14.91 4.97 -55.98 -0.28 -15.19 16 14 C 0.54 11.13 6.33 -12.46 -0.08 11.05 16 15 O -0.53 -12.29 12.28 -16.64 -0.20 -12.49 16 16 C -0.13 -2.19 5.88 -104.86 -0.62 -2.81 16 17 C -0.05 -0.76 9.27 -38.96 -0.36 -1.12 16 18 C -0.11 -1.30 6.10 -39.15 -0.24 -1.54 16 19 S -0.11 -1.17 22.55 -107.50 -2.42 -3.60 16 20 C -0.15 -0.93 9.14 101.05 0.92 -0.01 16 21 C -0.10 -1.09 9.35 -39.33 -0.37 -1.46 16 22 C -0.14 -1.61 9.97 -39.50 -0.39 -2.00 16 23 C 0.16 2.37 6.72 -38.72 -0.26 2.11 16 24 O -0.47 -7.26 11.56 -40.88 -0.47 -7.74 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.80 5.65 -51.93 -0.29 0.51 16 27 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 28 H 0.10 2.69 5.94 -51.93 -0.31 2.38 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.39 7.26 6.57 -40.82 -0.27 6.99 16 32 H 0.14 1.89 6.40 -52.49 -0.34 1.56 16 33 H 0.08 0.48 7.74 -51.92 -0.40 0.08 16 34 H 0.08 0.46 7.74 -51.92 -0.40 0.06 16 35 H 0.11 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.13 0.99 5.84 -52.49 -0.31 0.68 16 37 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.39 4.51 9.06 45.56 0.41 4.92 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -31.49 325.39 -8.58 -40.07 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -3.94 Total: 10.28 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -1.77 Total: -7.83 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.35 Total: -39.29 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.68 Total: -20.23 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -2.42 Total: -3.60 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.49 -8.58 -40.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597509282.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.877 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds