Wall clock time and date at job start Tue Mar 31 2020 07:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 115.56066 * 2 1 4 4 C 1.53072 * 117.51318 * 214.29581 * 2 1 3 5 5 C 1.52994 * 59.98448 * 252.52287 * 4 2 1 6 6 H 1.09005 * 117.50218 * 252.49934 * 5 4 2 7 7 C 1.53005 * 117.49858 * 107.50313 * 5 4 2 8 8 N 1.46504 * 109.47028 * 120.21227 * 7 5 4 9 9 S 1.65593 * 119.99758 * 163.39485 * 8 7 5 10 10 O 1.42096 * 106.40325 * 309.25191 * 9 8 7 11 11 O 1.42107 * 106.40285 * 176.33499 * 9 8 7 12 12 C 1.76198 * 107.22055 * 62.79588 * 9 8 7 13 13 C 1.37645 * 120.12813 * 244.96471 * 12 9 8 14 14 C 1.38608 * 120.25081 * 179.97438 * 13 12 9 15 15 C 1.38660 * 120.50074 * 359.97438 * 14 13 12 16 16 C 1.37602 * 120.24813 * 0.02562 * 15 14 13 17 17 C 1.40694 * 120.13111 * 64.93905 * 12 9 8 18 18 C 1.41401 * 120.24095 * 0.02562 * 17 12 9 19 19 H 1.07996 * 120.00004 * 328.23612 * 18 17 12 20 20 C 1.39941 * 119.99800 * 148.23574 * 18 17 12 21 21 N 1.30829 * 120.00164 * 348.52142 * 20 18 17 22 22 Si 1.86800 * 120.00014 * 168.51982 * 20 18 17 23 23 H 1.48495 * 109.46976 * 354.99550 * 22 20 18 24 24 H 1.48503 * 109.46793 * 114.99372 * 22 20 18 25 25 H 1.48497 * 109.47377 * 234.99329 * 22 20 18 26 26 H 1.08995 * 109.47368 * 279.32234 * 1 2 3 27 27 H 1.08994 * 109.47225 * 39.32661 * 1 2 3 28 28 H 1.09008 * 109.46837 * 159.32523 * 1 2 3 29 29 H 1.09005 * 117.49044 * 145.03972 * 4 2 1 30 30 H 1.08999 * 117.53569 * 359.97438 * 4 2 1 31 31 H 1.08995 * 109.46880 * 0.21015 * 7 5 4 32 32 H 1.08997 * 109.46930 * 240.21242 * 7 5 4 33 33 H 0.97000 * 119.99850 * 343.39481 * 8 7 5 34 34 H 1.08003 * 119.87175 * 359.97411 * 13 12 9 35 35 H 1.07996 * 119.75005 * 179.97438 * 14 13 12 36 36 H 1.07998 * 119.87433 * 179.72123 * 15 14 13 37 37 H 1.07995 * 120.12505 * 179.97438 * 16 15 14 38 38 H 0.96993 * 119.99931 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 3.1713 -0.8750 1.2687 7 6 1.3588 -2.1562 1.4715 8 7 2.1966 -3.0131 2.3142 9 16 1.5043 -3.9412 3.4980 10 8 0.6756 -3.0713 4.2567 11 8 2.5536 -4.7100 4.0702 12 6 0.4270 -5.0851 2.7008 13 6 -0.9309 -5.0207 2.9165 14 6 -1.7808 -5.9190 2.2903 15 6 -1.2751 -6.8910 1.4405 16 6 0.0790 -6.9740 1.2102 17 6 0.9514 -6.0676 1.8410 18 6 2.3446 -6.1434 1.6120 19 1 2.9446 -5.2456 1.6311 20 6 2.9460 -7.3817 1.3604 21 7 2.2741 -8.4871 1.5563 22 14 4.7081 -7.4564 0.7449 23 1 5.2024 -6.0794 0.4907 24 1 5.5630 -8.1080 1.7695 25 1 4.7596 -8.2413 -0.5147 26 1 -0.3634 0.1665 1.0140 27 1 -0.3633 0.7949 -0.6512 28 1 -0.3633 -0.9616 -0.3629 29 1 3.1724 -0.8756 -1.2679 30 1 1.6127 -1.8599 -1.2680 31 1 0.8470 -2.7668 0.7277 32 1 0.6221 -1.6455 2.0915 33 1 3.1568 -3.0367 2.1786 34 1 -1.3357 -4.2674 3.5761 35 1 -2.8448 -5.8613 2.4656 36 1 -1.9460 -7.5886 0.9614 37 1 0.4707 -7.7321 0.5483 38 1 2.6908 -9.3453 1.3816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601303580.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:16 Heat of formation + Delta-G solvation = -45.146335 kcal Electronic energy + Delta-G solvation = -22154.449952 eV Core-core repulsion = 18895.800025 eV Total energy + Delta-G solvation = -3258.649928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.28406 -37.58970 -36.18204 -34.80649 -34.02930 -33.74822 -30.21925 -29.58195 -28.52461 -25.96228 -25.47452 -21.69556 -21.48390 -21.14166 -19.75613 -18.49044 -17.68455 -16.75298 -16.37875 -15.93162 -15.39418 -14.83023 -14.39700 -14.06455 -13.69031 -13.63537 -13.26484 -13.17535 -12.92212 -12.74276 -12.23405 -11.90489 -11.58636 -11.52079 -11.36620 -11.27439 -11.16120 -11.09952 -10.99828 -10.91307 -10.68789 -10.49289 -10.04301 -9.87840 -9.80804 -9.44563 -9.36363 -8.71451 -8.03761 -7.58576 -7.01723 -4.74950 1.55598 2.33159 2.72170 2.98037 3.03672 3.10272 3.72510 3.79187 4.01119 4.42298 4.67345 4.75105 4.88102 4.91975 5.27522 5.29448 5.39695 5.59587 5.71876 5.79234 5.81886 5.88348 5.98721 6.03903 6.04770 6.22409 6.23157 6.33393 6.38597 6.48021 6.79846 6.93348 7.07875 7.30987 7.48028 7.56741 7.67832 7.79098 7.89714 8.28279 8.52320 8.64009 9.93470 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012513 B = 0.006931 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.055937 B = 4038.573257 C = 4767.746160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.151 4.151 3 H 0.102 0.898 4 C -0.175 4.175 5 C -0.154 4.154 6 H 0.109 0.891 7 C 0.156 3.844 8 N -1.120 6.120 9 S 2.701 3.299 10 O -0.999 6.999 11 O -0.964 6.964 12 C -0.773 4.773 13 C -0.004 4.004 14 C -0.249 4.249 15 C -0.076 4.076 16 C -0.156 4.156 17 C 0.189 3.811 18 C -0.451 4.451 19 H 0.088 0.912 20 C 0.081 3.919 21 N -0.779 5.779 22 Si 0.915 3.085 23 H -0.255 1.255 24 H -0.268 1.268 25 H -0.271 1.271 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.411 0.589 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 9.624 -5.521 11.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.170 4.170 3 H 0.120 0.880 4 C -0.212 4.212 5 C -0.174 4.174 6 H 0.127 0.873 7 C 0.029 3.971 8 N -0.877 5.877 9 S 2.798 3.202 10 O -0.989 6.989 11 O -0.954 6.954 12 C -0.868 4.868 13 C -0.024 4.024 14 C -0.269 4.269 15 C -0.095 4.095 16 C -0.176 4.176 17 C 0.185 3.815 18 C -0.479 4.479 19 H 0.106 0.894 20 C -0.139 4.139 21 N -0.403 5.403 22 Si 0.739 3.261 23 H -0.178 1.178 24 H -0.193 1.193 25 H -0.196 1.196 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.244 0.756 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.138 0.862 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.204 9.481 -4.573 10.528 hybrid contribution 0.791 -0.664 -0.943 1.399 sum 0.996 8.817 -5.517 10.448 Atomic orbital electron populations 1.21394 0.92791 1.02220 1.02129 1.22374 0.95567 0.94227 1.04788 0.87975 1.23228 1.02459 1.01448 0.94027 1.22571 1.01300 0.99472 0.94049 0.87277 1.20671 0.92156 0.90546 0.93705 1.55647 1.17680 1.59687 1.54702 1.01059 0.73504 0.72852 0.72758 1.93444 1.70010 1.66797 1.68667 1.93546 1.56106 1.70221 1.75538 1.29925 1.07995 1.24101 1.24748 1.20273 0.91839 0.95763 0.94524 1.20496 0.97535 1.01878 1.06986 1.20901 0.95544 0.96310 0.96765 1.21423 0.91801 1.01739 1.02589 1.17006 0.92820 0.87281 0.84412 1.19852 0.92464 0.94871 1.40719 0.89368 1.25919 1.01089 0.94859 0.92080 1.69784 1.38696 0.99127 1.32647 0.86129 0.80990 0.80094 0.78928 1.17847 1.19258 1.19604 0.91816 0.92328 0.92044 0.88980 0.88308 0.91569 0.90516 0.75551 0.87383 0.88694 0.88794 0.86211 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 9.13 37.16 0.34 -0.98 16 2 C -0.15 -1.61 6.41 -90.58 -0.58 -2.19 16 3 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.17 -1.96 9.83 -26.70 -0.26 -2.22 16 5 C -0.15 -1.92 5.84 -90.62 -0.53 -2.45 16 6 H 0.11 1.27 8.12 -51.93 -0.42 0.85 16 7 C 0.16 2.38 5.56 -4.04 -0.02 2.36 16 8 N -1.12 -19.66 5.06 -10.61 -0.05 -19.71 16 9 S 2.70 59.34 4.96 -107.50 -0.53 58.80 16 10 O -1.00 -22.82 16.50 -57.17 -0.94 -23.76 16 11 O -0.96 -24.12 16.64 -57.17 -0.95 -25.07 16 12 C -0.77 -18.45 5.90 -38.87 -0.23 -18.68 16 13 C 0.00 -0.09 9.53 -39.66 -0.38 -0.47 16 14 C -0.25 -5.40 10.05 -39.29 -0.39 -5.80 16 15 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 16 C -0.16 -3.83 8.64 -38.87 -0.34 -4.17 16 17 C 0.19 4.81 5.50 -106.82 -0.59 4.22 16 18 C -0.45 -11.28 7.53 -37.74 -0.28 -11.56 16 19 H 0.09 2.06 5.96 -52.49 -0.31 1.75 16 20 C 0.08 1.97 5.22 -17.34 -0.09 1.88 16 21 N -0.78 -19.34 11.10 55.55 0.62 -18.72 16 22 Si 0.92 18.11 29.57 -169.99 -5.03 13.08 16 23 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 26 H 0.06 0.66 7.96 -51.93 -0.41 0.25 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.66 7.83 -51.92 -0.41 0.25 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.15 7.97 -51.93 -0.41 0.73 16 31 H 0.07 1.04 7.87 -51.93 -0.41 0.63 16 32 H 0.08 1.17 7.37 -51.93 -0.38 0.79 16 33 H 0.41 6.46 8.47 -34.47 -0.29 6.17 16 34 H 0.11 2.26 7.33 -52.48 -0.38 1.87 16 35 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.12 2.97 6.49 -52.49 -0.34 2.63 16 38 H 0.29 6.38 8.30 -40.82 -0.34 6.05 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -30.16 328.49 -10.72 -40.88 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -5.02 Total: 11.70 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: -3.75 Total: -42.14 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.56 Total: -38.43 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -1.89 Total: -48.84 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: 59.34 SS G_CDS: -0.53 Total: 58.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.16 -10.72 -40.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601303580.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.267 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds