Wall clock time and date at job start Tue Mar 31 2020 07:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 115.56066 * 2 1 4 4 C 1.53072 * 117.51318 * 214.29581 * 2 1 3 5 5 C 1.52994 * 59.98448 * 252.52287 * 4 2 1 6 6 H 1.09005 * 117.50218 * 252.49934 * 5 4 2 7 7 C 1.53005 * 117.49858 * 107.50313 * 5 4 2 8 8 N 1.46504 * 109.47028 * 120.21227 * 7 5 4 9 9 S 1.65593 * 119.99758 * 163.39485 * 8 7 5 10 10 O 1.42096 * 106.40325 * 309.25191 * 9 8 7 11 11 O 1.42107 * 106.40285 * 176.33499 * 9 8 7 12 12 C 1.76198 * 107.22055 * 62.79588 * 9 8 7 13 13 C 1.37645 * 120.12813 * 244.96471 * 12 9 8 14 14 C 1.38608 * 120.25081 * 179.97438 * 13 12 9 15 15 C 1.38660 * 120.50074 * 359.97438 * 14 13 12 16 16 C 1.37602 * 120.24813 * 0.02562 * 15 14 13 17 17 C 1.40694 * 120.13111 * 64.93905 * 12 9 8 18 18 C 1.41401 * 120.24095 * 0.02562 * 17 12 9 19 19 H 1.07996 * 120.00004 * 328.23612 * 18 17 12 20 20 C 1.39941 * 119.99800 * 148.23574 * 18 17 12 21 21 N 1.30829 * 120.00164 * 348.52142 * 20 18 17 22 22 Si 1.86800 * 120.00014 * 168.51982 * 20 18 17 23 23 H 1.48495 * 109.46976 * 354.99550 * 22 20 18 24 24 H 1.48503 * 109.46793 * 114.99372 * 22 20 18 25 25 H 1.48497 * 109.47377 * 234.99329 * 22 20 18 26 26 H 1.08995 * 109.47368 * 279.32234 * 1 2 3 27 27 H 1.08994 * 109.47225 * 39.32661 * 1 2 3 28 28 H 1.09008 * 109.46837 * 159.32523 * 1 2 3 29 29 H 1.09005 * 117.49044 * 145.03972 * 4 2 1 30 30 H 1.08999 * 117.53569 * 359.97438 * 4 2 1 31 31 H 1.08995 * 109.46880 * 0.21015 * 7 5 4 32 32 H 1.08997 * 109.46930 * 240.21242 * 7 5 4 33 33 H 0.97000 * 119.99850 * 343.39481 * 8 7 5 34 34 H 1.08003 * 119.87175 * 359.97411 * 13 12 9 35 35 H 1.07996 * 119.75005 * 179.97438 * 14 13 12 36 36 H 1.07998 * 119.87433 * 179.72123 * 15 14 13 37 37 H 1.07995 * 120.12505 * 179.97438 * 16 15 14 38 38 H 0.96993 * 119.99931 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 3.1713 -0.8750 1.2687 7 6 1.3588 -2.1562 1.4715 8 7 2.1966 -3.0131 2.3142 9 16 1.5043 -3.9412 3.4980 10 8 0.6756 -3.0713 4.2567 11 8 2.5536 -4.7100 4.0702 12 6 0.4270 -5.0851 2.7008 13 6 -0.9309 -5.0207 2.9165 14 6 -1.7808 -5.9190 2.2903 15 6 -1.2751 -6.8910 1.4405 16 6 0.0790 -6.9740 1.2102 17 6 0.9514 -6.0676 1.8410 18 6 2.3446 -6.1434 1.6120 19 1 2.9446 -5.2456 1.6311 20 6 2.9460 -7.3817 1.3604 21 7 2.2741 -8.4871 1.5563 22 14 4.7081 -7.4564 0.7449 23 1 5.2024 -6.0794 0.4907 24 1 5.5630 -8.1080 1.7695 25 1 4.7596 -8.2413 -0.5147 26 1 -0.3634 0.1665 1.0140 27 1 -0.3633 0.7949 -0.6512 28 1 -0.3633 -0.9616 -0.3629 29 1 3.1724 -0.8756 -1.2679 30 1 1.6127 -1.8599 -1.2680 31 1 0.8470 -2.7668 0.7277 32 1 0.6221 -1.6455 2.0915 33 1 3.1568 -3.0367 2.1786 34 1 -1.3357 -4.2674 3.5761 35 1 -2.8448 -5.8613 2.4656 36 1 -1.9460 -7.5886 0.9614 37 1 0.4707 -7.7321 0.5483 38 1 2.6908 -9.3453 1.3816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601303580.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:16 Heat of formation + Delta-G solvation = -63.722611 kcal Electronic energy + Delta-G solvation = -22155.255480 eV Core-core repulsion = 18895.800025 eV Total energy + Delta-G solvation = -3259.455455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.40779 -39.23369 -38.01284 -36.66412 -35.68930 -35.22742 -32.02108 -31.38503 -29.38862 -27.41819 -27.06962 -23.45773 -22.96136 -22.41627 -20.83505 -20.09080 -19.49210 -18.42579 -17.83163 -17.44477 -17.07646 -16.29485 -16.04445 -15.49905 -15.11948 -14.94938 -14.86758 -14.66925 -14.46240 -13.83112 -13.70482 -13.28844 -13.07871 -13.03135 -12.96743 -12.93821 -12.84474 -12.80777 -12.51756 -12.29399 -12.11999 -12.01178 -11.63334 -11.30096 -11.17871 -10.86821 -10.73127 -10.13922 -9.84243 -9.41521 -8.79216 -6.60992 -0.16508 0.51988 0.96113 1.36433 1.48744 1.51899 2.16239 2.33116 2.63816 2.89603 2.98760 3.45550 3.68405 3.90161 3.96920 4.00986 4.28668 4.33185 4.49221 4.50757 4.53832 4.70254 4.76459 4.89680 4.98384 5.00582 5.01840 5.12321 5.13325 5.25154 5.29557 5.35645 5.50231 5.51946 5.69869 5.81201 5.98624 6.08333 6.24133 6.46770 6.69138 6.82280 8.19207 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012513 B = 0.006931 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.055937 B = 4038.573257 C = 4767.746160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 H 0.123 0.877 4 C -0.173 4.173 5 C -0.170 4.170 6 H 0.119 0.881 7 C 0.152 3.848 8 N -1.108 6.108 9 S 2.720 3.280 10 O -1.009 7.009 11 O -0.998 6.998 12 C -0.789 4.789 13 C -0.018 4.018 14 C -0.247 4.247 15 C -0.075 4.075 16 C -0.183 4.183 17 C 0.165 3.835 18 C -0.480 4.480 19 H 0.095 0.905 20 C 0.039 3.961 21 N -0.813 5.813 22 Si 0.975 3.025 23 H -0.245 1.245 24 H -0.270 1.270 25 H -0.256 1.256 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.421 0.579 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 10.969 -6.498 12.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.155 4.155 3 H 0.141 0.859 4 C -0.210 4.210 5 C -0.189 4.189 6 H 0.137 0.863 7 C 0.026 3.974 8 N -0.869 5.869 9 S 2.816 3.184 10 O -0.999 6.999 11 O -0.989 6.989 12 C -0.883 4.883 13 C -0.038 4.038 14 C -0.267 4.267 15 C -0.093 4.093 16 C -0.203 4.203 17 C 0.160 3.840 18 C -0.508 4.508 19 H 0.113 0.887 20 C -0.179 4.179 21 N -0.437 5.437 22 Si 0.795 3.205 23 H -0.168 1.168 24 H -0.195 1.195 25 H -0.180 1.180 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.256 0.744 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.127 0.873 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.329 10.820 -5.556 12.168 hybrid contribution 0.605 -1.029 -0.620 1.345 sum 0.934 9.792 -6.176 11.614 Atomic orbital electron populations 1.21451 0.92748 1.02411 1.02374 1.22504 0.95673 0.94586 1.02774 0.85941 1.23291 1.03200 1.01548 0.92987 1.22520 1.01688 0.99974 0.94756 0.86279 1.20814 0.92495 0.90775 0.93292 1.55270 1.18321 1.59023 1.54257 1.00341 0.72717 0.72432 0.72893 1.93420 1.70359 1.66723 1.69446 1.93491 1.57079 1.71430 1.76885 1.30214 1.09046 1.24586 1.24451 1.20608 0.91716 0.96488 0.94938 1.20912 0.99232 1.00775 1.05806 1.21256 0.95122 0.96623 0.96329 1.21481 0.93003 1.02275 1.03538 1.17322 0.93514 0.88074 0.85067 1.20144 0.92801 0.95737 1.42121 0.88745 1.26791 1.05034 0.94255 0.91785 1.69825 1.40531 0.99806 1.33572 0.85248 0.75891 0.80658 0.78728 1.16818 1.19461 1.18039 0.92096 0.90468 0.93050 0.87377 0.89150 0.92397 0.90679 0.74378 0.85887 0.85316 0.85859 0.87309 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.13 71.98 0.66 -1.83 16 2 C -0.14 -2.58 6.41 -10.77 -0.07 -2.65 16 3 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.17 -3.54 9.83 30.62 0.30 -3.24 16 5 C -0.17 -3.94 5.84 -10.80 -0.06 -4.00 16 6 H 0.12 2.53 8.12 -2.38 -0.02 2.51 16 7 C 0.15 4.57 5.56 86.38 0.48 5.05 16 8 N -1.11 -38.59 5.06 -187.48 -0.95 -39.54 16 9 S 2.72 120.19 4.96 -56.49 -0.28 119.91 16 10 O -1.01 -45.87 16.50 -128.00 -2.11 -47.98 16 11 O -1.00 -50.77 16.64 -128.00 -2.13 -52.90 16 12 C -0.79 -38.00 5.90 22.73 0.13 -37.87 16 13 C -0.02 -0.80 9.53 22.22 0.21 -0.58 16 14 C -0.25 -10.35 10.05 22.46 0.23 -10.12 16 15 C -0.07 -3.26 10.02 22.22 0.22 -3.04 16 16 C -0.18 -9.14 8.64 22.73 0.20 -8.95 16 17 C 0.16 8.51 5.50 -21.29 -0.12 8.40 16 18 C -0.48 -24.45 7.53 23.46 0.18 -24.27 16 19 H 0.09 4.48 5.96 -2.91 -0.02 4.46 16 20 C 0.04 1.89 5.22 85.25 0.45 2.34 16 21 N -0.81 -41.18 11.10 21.83 0.24 -40.94 16 22 Si 0.98 36.88 29.57 68.60 2.03 38.91 16 23 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 24 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 25 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 26 H 0.06 1.17 7.96 -2.39 -0.02 1.16 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 28 H 0.05 1.05 7.83 -2.38 -0.02 1.03 16 29 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.09 2.00 7.97 -2.39 -0.02 1.98 16 31 H 0.06 1.82 7.87 -2.39 -0.02 1.81 16 32 H 0.08 2.26 7.37 -2.39 -0.02 2.24 16 33 H 0.42 13.02 8.47 -96.75 -0.82 12.20 16 34 H 0.12 5.02 7.33 -2.91 -0.02 5.00 16 35 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 36 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.11 5.56 6.49 -2.91 -0.02 5.54 16 38 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 Total: -1.00 -64.73 328.49 -0.14 -64.87 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: 0.26 Total: 38.44 kcal Atomic # 6 Polarization: -83.57 SS G_CDS: 2.80 Total: -80.77 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -0.71 Total: -80.48 kcal Atomic # 8 Polarization: -96.64 SS G_CDS: -4.24 Total: -100.88 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Atomic # 16 Polarization: 120.19 SS G_CDS: -0.28 Total: 119.91 kcal Total: -64.73 -0.14 -64.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601303580.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.145 kcal (2) G-P(sol) polarization free energy of solvation -64.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds