Wall clock time and date at job start Tue Mar 31 2020 07:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 110.77709 * 2 1 4 4 C 1.55150 * 110.71902 * 123.23946 * 2 1 3 5 5 C 1.54915 * 101.58181 * 153.86760 * 4 2 1 6 6 N 1.47423 * 104.83147 * 322.99041 * 5 4 2 7 7 S 1.65594 * 125.64932 * 204.09081 * 6 5 4 8 8 O 1.42095 * 106.40306 * 343.36982 * 7 6 5 9 9 O 1.42102 * 106.40489 * 210.44383 * 7 6 5 10 10 C 1.76202 * 107.21740 * 96.90698 * 7 6 5 11 11 C 1.37637 * 120.12843 * 113.92771 * 10 7 6 12 12 C 1.38612 * 120.25085 * 180.02562 * 11 10 7 13 13 C 1.38657 * 120.50226 * 359.97438 * 12 11 10 14 14 C 1.37600 * 120.24426 * 0.02562 * 13 12 11 15 15 C 1.40703 * 120.12842 * 293.94846 * 10 7 6 16 16 C 1.41390 * 120.24121 * 359.97438 * 15 10 7 17 17 H 1.07997 * 120.00332 * 328.11229 * 16 15 10 18 18 C 1.39952 * 119.99885 * 148.11659 * 16 15 10 19 19 N 1.30822 * 119.99891 * 167.52082 * 18 16 15 20 20 Si 1.86804 * 119.99830 * 347.52121 * 18 16 15 21 21 H 1.48495 * 109.46935 * 92.92587 * 20 18 16 22 22 H 1.48504 * 109.46863 * 212.92849 * 20 18 16 23 23 H 1.48507 * 109.47003 * 332.92702 * 20 18 16 24 24 C 1.47021 * 108.70163 * 24.35344 * 6 5 4 25 25 H 1.08995 * 109.47001 * 298.21413 * 1 2 3 26 26 H 1.09004 * 109.46938 * 58.21627 * 1 2 3 27 27 H 1.08996 * 109.47006 * 178.21098 * 1 2 3 28 28 H 1.08999 * 111.01087 * 35.79495 * 4 2 1 29 29 H 1.08999 * 111.04114 * 271.95383 * 4 2 1 30 30 H 1.09002 * 110.36395 * 204.15250 * 5 4 2 31 31 H 1.09000 * 110.36682 * 81.82745 * 5 4 2 32 32 H 1.08003 * 119.87392 * 0.02562 * 11 10 7 33 33 H 1.07999 * 119.75348 * 180.02562 * 12 11 10 34 34 H 1.07996 * 119.87703 * 179.72772 * 13 12 11 35 35 H 1.08007 * 120.12557 * 179.97438 * 14 13 12 36 36 H 0.97005 * 119.99354 * 179.97438 * 19 18 16 37 37 H 1.09003 * 109.87801 * 118.13213 * 24 6 5 38 38 H 1.08994 * 109.88603 * 239.29250 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0789 -0.7954 1.2137 5 6 3.4633 -1.2497 0.6875 6 7 3.2446 -1.5507 -0.7390 7 16 4.1634 -2.5739 -1.6615 8 8 5.3768 -2.7752 -0.9499 9 8 4.1154 -2.0696 -2.9891 10 6 3.3397 -4.1312 -1.6908 11 6 2.8180 -4.6148 -2.8691 12 6 2.1690 -5.8393 -2.8949 13 6 2.0380 -6.5909 -1.7372 14 6 2.5518 -6.1272 -0.5479 15 6 3.2123 -4.8851 -0.5096 16 6 3.7444 -4.3985 0.7066 17 1 4.6338 -3.7860 0.7003 18 6 3.1184 -4.7107 1.9188 19 7 3.7307 -4.4755 3.0507 20 14 1.4087 -5.4633 1.9204 21 1 1.5196 -6.9437 1.9536 22 1 0.6632 -4.9957 3.1167 23 1 0.6841 -5.0486 0.6922 24 6 2.0794 -0.7869 -1.2086 25 1 -0.3633 0.4858 0.9055 26 1 -0.3633 0.5413 -0.8736 27 1 -0.3633 -1.0271 -0.0321 28 1 1.4452 -1.6536 1.4375 29 1 2.1849 -0.1524 2.0874 30 1 3.7960 -2.1426 1.2169 31 1 4.1931 -0.4478 0.7984 32 1 2.9146 -4.0378 -3.7770 33 1 1.7630 -6.2112 -3.8240 34 1 1.5266 -7.5416 -1.7680 35 1 2.4483 -6.7141 0.3529 36 1 3.2966 -4.6915 3.8909 37 1 2.3815 -0.0969 -1.9965 38 1 1.3157 -1.4686 -1.5830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601334076.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:53 Heat of formation + Delta-G solvation = -60.792816 kcal Electronic energy + Delta-G solvation = -23095.858106 eV Core-core repulsion = 19836.529696 eV Total energy + Delta-G solvation = -3259.328410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.22219 -37.88005 -36.34527 -34.91486 -33.90018 -32.11311 -30.74468 -30.13684 -29.04020 -25.74680 -25.39041 -22.15043 -21.73718 -21.21000 -20.02114 -18.19737 -17.76387 -17.19305 -16.32942 -15.94655 -15.31285 -14.78152 -14.26298 -13.85206 -13.67028 -13.47889 -13.21916 -13.07082 -12.86136 -12.68522 -12.31020 -12.23302 -11.89553 -11.65832 -11.37774 -11.28077 -11.21586 -11.01557 -10.87881 -10.70273 -10.59890 -10.53458 -10.41680 -10.14583 -9.96917 -9.52758 -9.26416 -8.37145 -8.20251 -7.85086 -7.20678 -4.90375 1.41075 2.05650 2.49375 2.91397 3.00380 3.10904 3.73780 3.86460 4.22648 4.66611 4.75335 4.95155 5.06982 5.15088 5.42264 5.62218 5.72385 5.74000 5.79509 5.81603 5.87895 5.98039 6.10069 6.15229 6.20470 6.25048 6.35508 6.38663 6.51279 6.59830 6.67347 6.84597 6.92323 7.04676 7.08229 7.26991 7.41190 7.53143 7.80995 8.12654 8.29170 8.50524 9.76458 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.010005 C = 0.007657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.600461 B = 2797.922458 C = 3655.982588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.079 0.921 4 C -0.123 4.123 5 C 0.114 3.886 6 N -1.004 6.004 7 S 2.720 3.280 8 O -0.963 6.963 9 O -0.993 6.993 10 C -0.769 4.769 11 C 0.016 3.984 12 C -0.257 4.257 13 C -0.045 4.045 14 C -0.235 4.235 15 C 0.168 3.832 16 C -0.460 4.460 17 H 0.133 0.867 18 C 0.091 3.909 19 N -0.780 5.780 20 Si 0.904 3.096 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.240 1.240 24 C 0.127 3.873 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.291 0.709 37 H 0.063 0.937 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.893 5.533 -1.238 8.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.097 0.903 4 C -0.162 4.162 5 C -0.011 4.011 6 N -0.841 5.841 7 S 2.819 3.181 8 O -0.954 6.954 9 O -0.984 6.984 10 C -0.863 4.863 11 C -0.004 4.004 12 C -0.278 4.278 13 C -0.063 4.063 14 C -0.255 4.255 15 C 0.163 3.837 16 C -0.487 4.487 17 H 0.150 0.850 18 C -0.132 4.132 19 N -0.401 5.401 20 Si 0.730 3.270 21 H -0.193 1.193 22 H -0.213 1.213 23 H -0.163 1.163 24 C 0.001 3.999 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.128 0.872 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.956 5.776 -1.394 8.413 hybrid contribution -1.341 -1.134 0.343 1.790 sum -7.298 4.642 -1.051 8.713 Atomic orbital electron populations 1.21761 0.94520 1.02211 1.01457 1.22214 0.95662 0.99160 0.95177 0.90252 1.22814 0.96934 0.99750 0.96729 1.22231 0.96361 1.02304 0.80219 1.58498 1.44599 1.59258 1.21740 1.00569 0.73159 0.73053 0.71339 1.93503 1.42347 1.86144 1.73397 1.93444 1.87472 1.80447 1.37022 1.30039 1.31827 1.23318 1.01087 1.20410 0.90404 0.94407 0.95176 1.20514 1.11343 0.98434 0.97466 1.20839 0.94998 0.97210 0.93279 1.21230 1.08933 0.98112 0.97204 1.17092 0.86165 0.89313 0.91174 1.20394 1.11653 1.27935 0.88749 0.85013 1.26179 1.00027 0.92240 0.94740 1.69653 1.37507 1.33734 0.99255 0.86444 0.81807 0.79709 0.79077 1.19348 1.21305 1.16319 1.21677 0.87622 0.94268 0.96332 0.92522 0.92680 0.92250 0.90614 0.90787 0.87246 0.92748 0.86856 0.88073 0.88270 0.87633 0.89774 0.91848 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.15 37.16 0.34 -1.25 16 2 C -0.10 -1.34 3.54 -88.78 -0.31 -1.66 16 3 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 4 C -0.12 -1.84 6.54 -24.58 -0.16 -2.00 16 5 C 0.11 2.06 6.69 -2.53 -0.02 2.04 16 6 N -1.00 -19.25 3.66 -111.41 -0.41 -19.65 16 7 S 2.72 60.67 5.30 -107.50 -0.57 60.10 16 8 O -0.96 -24.05 15.11 -57.17 -0.86 -24.91 16 9 O -0.99 -22.67 16.64 -57.17 -0.95 -23.62 16 10 C -0.77 -17.95 5.97 -38.87 -0.23 -18.18 16 11 C 0.02 0.34 9.53 -39.66 -0.38 -0.03 16 12 C -0.26 -5.26 10.05 -39.29 -0.39 -5.65 16 13 C -0.04 -0.93 10.02 -39.66 -0.40 -1.33 16 14 C -0.24 -5.44 7.01 -38.87 -0.27 -5.72 16 15 C 0.17 4.10 5.11 -106.83 -0.55 3.56 16 16 C -0.46 -11.53 6.80 -37.74 -0.26 -11.78 16 17 H 0.13 3.55 4.72 -52.49 -0.25 3.30 16 18 C 0.09 2.16 5.34 -17.34 -0.09 2.06 16 19 N -0.78 -18.55 13.93 55.55 0.77 -17.77 16 20 Si 0.90 18.91 24.42 -169.99 -4.15 14.76 16 21 H -0.27 -5.50 6.69 56.52 0.38 -5.13 16 22 H -0.29 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.24 -5.17 6.69 56.52 0.38 -4.79 16 24 C 0.13 2.02 6.67 -3.06 -0.02 2.00 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.11 2.30 4.98 -51.93 -0.26 2.04 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.11 2.25 7.32 -52.48 -0.38 1.87 16 33 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.11 2.37 4.53 -52.48 -0.24 2.14 16 36 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.97 7.79 -51.93 -0.40 0.57 16 LS Contribution 310.73 15.07 4.68 4.68 Total: -1.00 -28.58 310.73 -9.17 -37.74 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.94 Total: 6.61 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: -2.74 Total: -37.94 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.37 Total: -37.43 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -1.82 Total: -48.53 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.15 Total: 14.76 kcal Atomic # 16 Polarization: 60.67 SS G_CDS: -0.57 Total: 60.10 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.58 -9.17 -37.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601334076.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.050 kcal (2) G-P(sol) polarization free energy of solvation -28.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds