Wall clock time and date at job start Tue Mar 31 2020 07:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 110.77709 * 2 1 4 4 C 1.55150 * 110.71902 * 123.23946 * 2 1 3 5 5 C 1.54915 * 101.58181 * 153.86760 * 4 2 1 6 6 N 1.47423 * 104.83147 * 322.99041 * 5 4 2 7 7 S 1.65594 * 125.64932 * 204.09081 * 6 5 4 8 8 O 1.42095 * 106.40306 * 343.36982 * 7 6 5 9 9 O 1.42102 * 106.40489 * 210.44383 * 7 6 5 10 10 C 1.76202 * 107.21740 * 96.90698 * 7 6 5 11 11 C 1.37637 * 120.12843 * 113.92771 * 10 7 6 12 12 C 1.38612 * 120.25085 * 180.02562 * 11 10 7 13 13 C 1.38657 * 120.50226 * 359.97438 * 12 11 10 14 14 C 1.37600 * 120.24426 * 0.02562 * 13 12 11 15 15 C 1.40703 * 120.12842 * 293.94846 * 10 7 6 16 16 C 1.41390 * 120.24121 * 359.97438 * 15 10 7 17 17 H 1.07997 * 120.00332 * 328.11229 * 16 15 10 18 18 C 1.39952 * 119.99885 * 148.11659 * 16 15 10 19 19 N 1.30822 * 119.99891 * 167.52082 * 18 16 15 20 20 Si 1.86804 * 119.99830 * 347.52121 * 18 16 15 21 21 H 1.48495 * 109.46935 * 92.92587 * 20 18 16 22 22 H 1.48504 * 109.46863 * 212.92849 * 20 18 16 23 23 H 1.48507 * 109.47003 * 332.92702 * 20 18 16 24 24 C 1.47021 * 108.70163 * 24.35344 * 6 5 4 25 25 H 1.08995 * 109.47001 * 298.21413 * 1 2 3 26 26 H 1.09004 * 109.46938 * 58.21627 * 1 2 3 27 27 H 1.08996 * 109.47006 * 178.21098 * 1 2 3 28 28 H 1.08999 * 111.01087 * 35.79495 * 4 2 1 29 29 H 1.08999 * 111.04114 * 271.95383 * 4 2 1 30 30 H 1.09002 * 110.36395 * 204.15250 * 5 4 2 31 31 H 1.09000 * 110.36682 * 81.82745 * 5 4 2 32 32 H 1.08003 * 119.87392 * 0.02562 * 11 10 7 33 33 H 1.07999 * 119.75348 * 180.02562 * 12 11 10 34 34 H 1.07996 * 119.87703 * 179.72772 * 13 12 11 35 35 H 1.08007 * 120.12557 * 179.97438 * 14 13 12 36 36 H 0.97005 * 119.99354 * 179.97438 * 19 18 16 37 37 H 1.09003 * 109.87801 * 118.13213 * 24 6 5 38 38 H 1.08994 * 109.88603 * 239.29250 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0789 -0.7954 1.2137 5 6 3.4633 -1.2497 0.6875 6 7 3.2446 -1.5507 -0.7390 7 16 4.1634 -2.5739 -1.6615 8 8 5.3768 -2.7752 -0.9499 9 8 4.1154 -2.0696 -2.9891 10 6 3.3397 -4.1312 -1.6908 11 6 2.8180 -4.6148 -2.8691 12 6 2.1690 -5.8393 -2.8949 13 6 2.0380 -6.5909 -1.7372 14 6 2.5518 -6.1272 -0.5479 15 6 3.2123 -4.8851 -0.5096 16 6 3.7444 -4.3985 0.7066 17 1 4.6338 -3.7860 0.7003 18 6 3.1184 -4.7107 1.9188 19 7 3.7307 -4.4755 3.0507 20 14 1.4087 -5.4633 1.9204 21 1 1.5196 -6.9437 1.9536 22 1 0.6632 -4.9957 3.1167 23 1 0.6841 -5.0486 0.6922 24 6 2.0794 -0.7869 -1.2086 25 1 -0.3633 0.4858 0.9055 26 1 -0.3633 0.5413 -0.8736 27 1 -0.3633 -1.0271 -0.0321 28 1 1.4452 -1.6536 1.4375 29 1 2.1849 -0.1524 2.0874 30 1 3.7960 -2.1426 1.2169 31 1 4.1931 -0.4478 0.7984 32 1 2.9146 -4.0378 -3.7770 33 1 1.7630 -6.2112 -3.8240 34 1 1.5266 -7.5416 -1.7680 35 1 2.4483 -6.7141 0.3529 36 1 3.2966 -4.6915 3.8909 37 1 2.3815 -0.0969 -1.9965 38 1 1.3157 -1.4686 -1.5830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601334076.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:52 Heat of formation + Delta-G solvation = -79.389979 kcal Electronic energy + Delta-G solvation = -23096.664539 eV Core-core repulsion = 19836.529696 eV Total energy + Delta-G solvation = -3260.134844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.67621 -39.43080 -38.16731 -36.76120 -35.66190 -33.34143 -32.48527 -31.84688 -30.34167 -27.23786 -26.79719 -23.82299 -23.16842 -22.94626 -21.14443 -19.86211 -19.54448 -18.82889 -18.02555 -17.41434 -16.93349 -16.43514 -15.91078 -15.54317 -15.36334 -14.81331 -14.60543 -14.50030 -14.36994 -14.06440 -13.81877 -13.61252 -13.42583 -13.17056 -13.08653 -12.97484 -12.83797 -12.73100 -12.50716 -12.28999 -12.05034 -11.80073 -11.70065 -11.55935 -11.36224 -11.27150 -10.98958 -10.01424 -9.75227 -9.60118 -8.97327 -6.73237 -0.29435 0.32003 0.75849 1.22793 1.34296 1.43646 2.05125 2.23687 2.49284 2.92562 3.29789 3.43744 3.73906 3.92144 4.04078 4.18171 4.27879 4.45047 4.55961 4.58724 4.66086 4.66878 4.67840 4.88896 4.90271 4.97788 5.01185 5.16902 5.20211 5.24775 5.33410 5.35366 5.35660 5.50273 5.57013 5.67058 5.73733 5.80541 6.07318 6.27705 6.51967 6.68298 8.05657 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.010005 C = 0.007657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.600461 B = 2797.922458 C = 3655.982588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.103 0.897 4 C -0.118 4.118 5 C 0.105 3.895 6 N -1.005 6.005 7 S 2.730 3.270 8 O -1.000 7.000 9 O -1.003 7.003 10 C -0.785 4.785 11 C 0.000 4.000 12 C -0.248 4.248 13 C -0.042 4.042 14 C -0.260 4.260 15 C 0.150 3.850 16 C -0.483 4.483 17 H 0.101 0.899 18 C 0.067 3.933 19 N -0.810 5.810 20 Si 0.948 3.052 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.250 1.250 24 C 0.114 3.886 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.108 0.892 36 H 0.301 0.699 37 H 0.075 0.925 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.452 5.697 -2.016 11.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.121 0.879 4 C -0.157 4.157 5 C -0.019 4.019 6 N -0.844 5.844 7 S 2.828 3.172 8 O -0.991 6.991 9 O -0.993 6.993 10 C -0.879 4.879 11 C -0.019 4.019 12 C -0.267 4.267 13 C -0.060 4.060 14 C -0.279 4.279 15 C 0.146 3.854 16 C -0.510 4.510 17 H 0.118 0.882 18 C -0.153 4.153 19 N -0.434 5.434 20 Si 0.772 3.228 21 H -0.185 1.185 22 H -0.196 1.196 23 H -0.173 1.173 24 C -0.011 4.011 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.508 5.936 -2.177 10.600 hybrid contribution -0.519 -1.178 0.456 1.365 sum -9.027 4.758 -1.721 10.348 Atomic orbital electron populations 1.21751 0.92700 1.01934 1.03221 1.22240 0.97026 0.99381 0.92372 0.87900 1.22806 0.94509 0.99939 0.98465 1.22313 0.98835 1.01240 0.79535 1.58263 1.45356 1.58755 1.22015 1.00040 0.72880 0.73165 0.71085 1.93453 1.44812 1.86731 1.74078 1.93414 1.87713 1.80577 1.37634 1.30252 1.32003 1.23991 1.01641 1.20753 0.90612 0.95456 0.95107 1.21015 1.09467 0.97329 0.98928 1.21305 0.93831 0.98549 0.92300 1.21400 1.10046 0.97865 0.98586 1.17288 0.86759 0.90158 0.91237 1.20232 1.11672 1.29059 0.90068 0.88175 1.26662 1.02334 0.92270 0.94049 1.69662 1.38916 1.34881 0.99896 0.85756 0.78507 0.79440 0.79107 1.18518 1.19563 1.17314 1.22039 0.86499 0.94465 0.98116 0.90752 0.90948 0.93561 0.92126 0.88219 0.90657 0.91563 0.85342 0.84235 0.84347 0.87433 0.88779 0.90693 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.15 71.98 0.66 -2.03 16 2 C -0.09 -2.16 3.54 -9.60 -0.03 -2.19 16 3 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 4 C -0.12 -3.41 6.54 31.99 0.21 -3.20 16 5 C 0.11 3.91 6.69 86.86 0.58 4.49 16 6 N -1.01 -39.03 3.66 -506.40 -1.85 -40.88 16 7 S 2.73 125.09 5.30 -56.49 -0.30 124.80 16 8 O -1.00 -52.68 15.11 -128.00 -1.93 -54.62 16 9 O -1.00 -46.06 16.64 -128.00 -2.13 -48.19 16 10 C -0.79 -37.00 5.97 22.73 0.14 -36.86 16 11 C 0.00 0.02 9.53 22.22 0.21 0.23 16 12 C -0.25 -9.33 10.05 22.46 0.23 -9.10 16 13 C -0.04 -1.61 10.02 22.22 0.22 -1.39 16 14 C -0.26 -11.77 7.01 22.73 0.16 -11.61 16 15 C 0.15 7.48 5.11 -21.29 -0.11 7.37 16 16 C -0.48 -25.21 6.80 23.46 0.16 -25.05 16 17 H 0.10 5.79 4.72 -2.91 -0.01 5.78 16 18 C 0.07 3.25 5.34 85.26 0.46 3.71 16 19 N -0.81 -39.76 13.93 21.83 0.30 -39.45 16 20 Si 0.95 38.58 24.42 68.60 1.68 40.25 16 21 H -0.26 -10.14 6.69 99.48 0.67 -9.47 16 22 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.25 -10.43 6.69 99.48 0.67 -9.77 16 24 C 0.11 3.48 6.67 86.73 0.58 4.06 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 28 H 0.06 1.92 8.05 -2.39 -0.02 1.90 16 29 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.08 3.37 4.98 -2.39 -0.01 3.35 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.13 4.91 7.32 -2.91 -0.02 4.89 16 33 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 35 H 0.11 4.74 4.53 -2.91 -0.01 4.73 16 36 H 0.30 13.10 8.30 -92.70 -0.77 12.33 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.06 1.85 7.79 -2.39 -0.02 1.83 16 Total: -1.00 -63.39 310.73 0.20 -63.18 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.99 Total: 26.50 kcal Atomic # 6 Polarization: -75.04 SS G_CDS: 3.45 Total: -71.59 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -1.55 Total: -80.34 kcal Atomic # 8 Polarization: -98.74 SS G_CDS: -4.06 Total: -102.81 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 1.68 Total: 40.25 kcal Atomic # 16 Polarization: 125.09 SS G_CDS: -0.30 Total: 124.80 kcal Total: -63.39 0.20 -63.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601334076.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.209 kcal (2) G-P(sol) polarization free energy of solvation -63.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds