Wall clock time and date at job start Tue Mar 31 2020 07:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 110.41734 * 2 1 4 4 C 1.55123 * 110.34330 * 122.45281 * 2 1 3 5 5 C 1.55155 * 101.48726 * 156.05676 * 4 2 1 6 6 C 1.54316 * 102.94309 * 324.32849 * 5 4 2 7 7 N 1.47019 * 107.27027 * 22.19417 * 6 5 4 8 8 S 1.65603 * 125.64838 * 181.02144 * 7 6 5 9 9 O 1.42098 * 106.40371 * 210.26621 * 8 7 6 10 10 O 1.42095 * 106.40641 * 343.18992 * 8 7 6 11 11 C 1.76204 * 107.21803 * 96.72984 * 8 7 6 12 12 C 1.37641 * 120.12638 * 116.19112 * 11 8 7 13 13 C 1.38615 * 120.24627 * 180.02562 * 12 11 8 14 14 C 1.38656 * 120.50156 * 359.97438 * 13 12 11 15 15 C 1.37598 * 120.24939 * 0.02562 * 14 13 12 16 16 C 1.40693 * 120.12773 * 295.92668 * 11 8 7 17 17 C 1.41395 * 120.24593 * 359.97438 * 16 11 8 18 18 H 1.08007 * 120.00136 * 330.73220 * 17 16 11 19 19 C 1.39948 * 120.00150 * 150.72687 * 17 16 11 20 20 N 1.30824 * 119.99737 * 161.52384 * 19 17 16 21 21 Si 1.86799 * 119.99945 * 341.51864 * 19 17 16 22 22 H 1.48497 * 109.46944 * 95.13905 * 21 19 17 23 23 H 1.48503 * 109.47013 * 215.14062 * 21 19 17 24 24 H 1.48499 * 109.47089 * 335.13779 * 21 19 17 25 25 H 1.08996 * 109.47153 * 182.29242 * 1 2 3 26 26 H 1.08998 * 109.46823 * 302.29059 * 1 2 3 27 27 H 1.09006 * 109.47078 * 62.28886 * 1 2 3 28 28 H 1.09000 * 111.19581 * 37.94944 * 4 2 1 29 29 H 1.09007 * 110.90341 * 274.03780 * 4 2 1 30 30 H 1.08998 * 110.72005 * 205.96628 * 5 4 2 31 31 H 1.09005 * 110.87404 * 82.76875 * 5 4 2 32 32 H 1.09004 * 109.88292 * 262.77548 * 6 5 4 33 33 H 1.09005 * 110.01255 * 141.68372 * 6 5 4 34 34 H 1.07995 * 119.87933 * 0.02562 * 12 11 8 35 35 H 1.07998 * 119.75236 * 179.97438 * 13 12 11 36 36 H 1.07996 * 119.87488 * 179.97438 * 14 13 12 37 37 H 1.07996 * 120.12654 * 179.97438 * 15 14 13 38 38 H 0.97002 * 119.99630 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0693 -0.7805 1.2273 5 6 3.4797 -1.1974 0.7330 6 6 3.2524 -1.4725 -0.7683 7 7 2.0431 -0.7384 -1.1684 8 16 1.3723 -0.7356 -2.6825 9 8 0.7457 0.5298 -2.8415 10 8 2.3728 -1.2238 -3.5656 11 6 0.0806 -1.9340 -2.6830 12 6 -1.2247 -1.5427 -2.8766 13 6 -2.2429 -2.4833 -2.8769 14 6 -1.9599 -3.8268 -2.6832 15 6 -0.6623 -4.2407 -2.4877 16 6 0.3801 -3.2952 -2.4909 17 6 1.7180 -3.7096 -2.2972 18 1 2.5271 -3.1465 -2.7384 19 6 1.9939 -4.8495 -1.5335 20 7 3.1546 -5.4435 -1.6407 21 14 0.7048 -5.5227 -0.3611 22 1 -0.0647 -6.5985 -1.0363 23 1 1.3727 -6.0742 0.8452 24 1 -0.2182 -4.4307 0.0398 25 1 -0.3633 -1.0268 0.0411 26 1 -0.3633 0.5490 0.8687 27 1 -0.3633 0.4779 -0.9098 28 1 1.4549 -1.6556 1.4389 29 1 2.1373 -0.1324 2.1012 30 1 3.8162 -2.0996 1.2438 31 1 4.1954 -0.3872 0.8727 32 1 3.1089 -2.5406 -0.9319 33 1 4.1076 -1.1208 -1.3456 34 1 -1.4566 -0.4990 -3.0288 35 1 -3.2643 -2.1674 -3.0291 36 1 -2.7611 -4.5510 -2.6849 37 1 -0.4442 -5.2875 -2.3366 38 1 3.3456 -6.2337 -1.1117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601360000.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:52 Heat of formation + Delta-G solvation = -58.488658 kcal Electronic energy + Delta-G solvation = -23465.537691 eV Core-core repulsion = 20206.309196 eV Total energy + Delta-G solvation = -3259.228494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.23020 -37.81870 -36.38687 -34.90003 -33.92964 -31.01459 -30.80420 -30.30092 -30.06357 -25.50079 -25.10721 -22.15236 -21.40723 -21.16358 -20.65248 -17.97202 -17.76275 -17.11881 -16.14535 -15.78647 -15.39347 -14.81362 -14.24436 -13.80166 -13.60311 -13.57356 -13.37697 -13.10388 -12.87195 -12.44955 -12.19307 -11.95360 -11.81827 -11.60189 -11.29782 -11.24662 -11.18926 -10.99729 -10.91580 -10.71585 -10.68334 -10.46376 -10.32135 -10.23290 -10.00734 -9.46887 -9.27958 -8.34002 -8.15421 -7.85651 -7.25091 -4.89450 1.43923 2.08249 2.51211 2.90954 2.99876 3.10942 3.72771 3.85384 4.20677 4.68619 4.87992 4.92460 5.14711 5.23378 5.48635 5.59956 5.65573 5.79633 5.82792 5.89920 5.92505 6.05405 6.17943 6.18858 6.23648 6.35069 6.39769 6.51135 6.60547 6.65696 6.70432 6.89344 6.92893 7.08497 7.12309 7.30063 7.43184 7.55608 7.82009 8.10456 8.30443 8.49897 9.72049 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013338 B = 0.010703 C = 0.008096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.817281 B = 2615.447863 C = 3457.681796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.156 3.844 3 H 0.070 0.930 4 C -0.126 4.126 5 C -0.127 4.127 6 C 0.111 3.889 7 N -1.001 6.001 8 S 2.721 3.279 9 O -0.992 6.992 10 O -0.968 6.968 11 C -0.768 4.768 12 C 0.019 3.981 13 C -0.260 4.260 14 C -0.044 4.044 15 C -0.236 4.236 16 C 0.166 3.834 17 C -0.457 4.457 18 H 0.129 0.871 19 C 0.091 3.909 20 N -0.774 5.774 21 Si 0.905 3.095 22 H -0.267 1.267 23 H -0.285 1.285 24 H -0.240 1.240 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.978 4.269 7.362 8.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.050 3.950 3 H 0.088 0.912 4 C -0.165 4.165 5 C -0.166 4.166 6 C -0.014 4.014 7 N -0.838 5.838 8 S 2.819 3.181 9 O -0.983 6.983 10 O -0.959 6.959 11 C -0.862 4.862 12 C -0.001 4.001 13 C -0.280 4.280 14 C -0.063 4.063 15 C -0.256 4.256 16 C 0.161 3.839 17 C -0.484 4.484 18 H 0.146 0.854 19 C -0.133 4.133 20 N -0.395 5.395 21 Si 0.730 3.270 22 H -0.193 1.193 23 H -0.212 1.212 24 H -0.163 1.163 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.442 4.645 6.619 8.214 hybrid contribution -1.011 -1.210 0.734 1.739 sum -2.453 3.435 7.354 8.479 Atomic orbital electron populations 1.22417 0.95005 1.03651 1.03629 1.21482 0.93765 0.94793 0.84970 0.91177 1.22872 0.96606 1.00318 0.96696 1.22583 0.96870 1.01416 0.95766 1.22003 0.85953 0.99226 0.94215 1.58571 1.38068 1.60675 1.26521 1.00527 0.73402 0.73037 0.71093 1.93432 1.77943 1.41583 1.85367 1.93498 1.59023 1.81667 1.61663 1.29960 1.11961 1.10554 1.33739 1.20363 0.91423 0.98039 0.90283 1.20483 0.97504 0.93439 1.16593 1.20823 0.95576 0.95352 0.94506 1.21198 0.93561 0.98255 1.12546 1.17040 0.92846 0.89121 0.84883 1.20349 0.93531 1.08474 1.26007 0.85370 1.26223 0.96260 0.94203 0.96577 1.69701 1.22777 1.15144 1.31861 0.86419 0.80926 0.80645 0.78982 1.19298 1.21205 1.16307 0.91080 0.91373 0.90537 0.90509 0.90897 0.90674 0.91480 0.88243 0.92364 0.87006 0.88195 0.88384 0.87725 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.96 8.59 37.16 0.32 -2.65 16 2 C 0.16 2.47 3.69 -66.30 -0.24 2.22 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.13 -1.71 6.51 -24.47 -0.16 -1.87 16 5 C -0.13 -1.79 6.95 -24.90 -0.17 -1.96 16 6 C 0.11 2.02 6.34 -3.07 -0.02 2.00 16 7 N -1.00 -19.22 3.49 -104.33 -0.36 -19.58 16 8 S 2.72 60.86 4.59 -107.50 -0.49 60.36 16 9 O -0.99 -22.35 14.92 -57.17 -0.85 -23.21 16 10 O -0.97 -24.53 15.26 -57.17 -0.87 -25.40 16 11 C -0.77 -17.75 5.60 -38.87 -0.22 -17.97 16 12 C 0.02 0.40 9.53 -39.66 -0.38 0.02 16 13 C -0.26 -5.26 10.05 -39.29 -0.39 -5.66 16 14 C -0.04 -0.91 10.02 -39.66 -0.40 -1.31 16 15 C -0.24 -5.44 7.18 -38.87 -0.28 -5.72 16 16 C 0.17 4.05 5.12 -106.83 -0.55 3.50 16 17 C -0.46 -11.45 6.56 -37.74 -0.25 -11.70 16 18 H 0.13 3.46 4.85 -52.48 -0.25 3.20 16 19 C 0.09 2.16 5.02 -17.34 -0.09 2.07 16 20 N -0.77 -18.46 13.93 55.55 0.77 -17.68 16 21 Si 0.90 18.80 24.50 -169.99 -4.17 14.64 16 22 H -0.27 -5.46 6.68 56.52 0.38 -5.09 16 23 H -0.29 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.24 -5.10 6.86 56.52 0.39 -4.71 16 25 H 0.07 1.21 8.13 -51.93 -0.42 0.78 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 1.31 6.18 -51.93 -0.32 0.99 16 28 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 2.06 4.95 -51.93 -0.26 1.80 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.11 2.20 7.33 -52.49 -0.38 1.81 16 35 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.11 2.35 4.63 -52.49 -0.24 2.11 16 38 H 0.29 6.22 8.30 -40.82 -0.34 5.89 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -28.42 305.91 -9.05 -37.47 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -4.86 Total: 7.79 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: -2.83 Total: -38.99 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.41 Total: -37.27 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -1.73 Total: -48.61 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.17 Total: 14.64 kcal Atomic # 16 Polarization: 60.86 SS G_CDS: -0.49 Total: 60.36 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.42 -9.05 -37.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601360000.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.022 kcal (2) G-P(sol) polarization free energy of solvation -28.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds