Wall clock time and date at job start Tue Mar 31 2020 07:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 110.41734 * 2 1 4 4 C 1.55123 * 110.34330 * 122.45281 * 2 1 3 5 5 C 1.55155 * 101.48726 * 156.05676 * 4 2 1 6 6 C 1.54316 * 102.94309 * 324.32849 * 5 4 2 7 7 N 1.47019 * 107.27027 * 22.19417 * 6 5 4 8 8 S 1.65603 * 125.64838 * 181.02144 * 7 6 5 9 9 O 1.42098 * 106.40371 * 210.26621 * 8 7 6 10 10 O 1.42095 * 106.40641 * 343.18992 * 8 7 6 11 11 C 1.76204 * 107.21803 * 96.72984 * 8 7 6 12 12 C 1.37641 * 120.12638 * 116.19112 * 11 8 7 13 13 C 1.38615 * 120.24627 * 180.02562 * 12 11 8 14 14 C 1.38656 * 120.50156 * 359.97438 * 13 12 11 15 15 C 1.37598 * 120.24939 * 0.02562 * 14 13 12 16 16 C 1.40693 * 120.12773 * 295.92668 * 11 8 7 17 17 C 1.41395 * 120.24593 * 359.97438 * 16 11 8 18 18 H 1.08007 * 120.00136 * 330.73220 * 17 16 11 19 19 C 1.39948 * 120.00150 * 150.72687 * 17 16 11 20 20 N 1.30824 * 119.99737 * 161.52384 * 19 17 16 21 21 Si 1.86799 * 119.99945 * 341.51864 * 19 17 16 22 22 H 1.48497 * 109.46944 * 95.13905 * 21 19 17 23 23 H 1.48503 * 109.47013 * 215.14062 * 21 19 17 24 24 H 1.48499 * 109.47089 * 335.13779 * 21 19 17 25 25 H 1.08996 * 109.47153 * 182.29242 * 1 2 3 26 26 H 1.08998 * 109.46823 * 302.29059 * 1 2 3 27 27 H 1.09006 * 109.47078 * 62.28886 * 1 2 3 28 28 H 1.09000 * 111.19581 * 37.94944 * 4 2 1 29 29 H 1.09007 * 110.90341 * 274.03780 * 4 2 1 30 30 H 1.08998 * 110.72005 * 205.96628 * 5 4 2 31 31 H 1.09005 * 110.87404 * 82.76875 * 5 4 2 32 32 H 1.09004 * 109.88292 * 262.77548 * 6 5 4 33 33 H 1.09005 * 110.01255 * 141.68372 * 6 5 4 34 34 H 1.07995 * 119.87933 * 0.02562 * 12 11 8 35 35 H 1.07998 * 119.75236 * 179.97438 * 13 12 11 36 36 H 1.07996 * 119.87488 * 179.97438 * 14 13 12 37 37 H 1.07996 * 120.12654 * 179.97438 * 15 14 13 38 38 H 0.97002 * 119.99630 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0693 -0.7805 1.2273 5 6 3.4797 -1.1974 0.7330 6 6 3.2524 -1.4725 -0.7683 7 7 2.0431 -0.7384 -1.1684 8 16 1.3723 -0.7356 -2.6825 9 8 0.7457 0.5298 -2.8415 10 8 2.3728 -1.2238 -3.5656 11 6 0.0806 -1.9340 -2.6830 12 6 -1.2247 -1.5427 -2.8766 13 6 -2.2429 -2.4833 -2.8769 14 6 -1.9599 -3.8268 -2.6832 15 6 -0.6623 -4.2407 -2.4877 16 6 0.3801 -3.2952 -2.4909 17 6 1.7180 -3.7096 -2.2972 18 1 2.5271 -3.1465 -2.7384 19 6 1.9939 -4.8495 -1.5335 20 7 3.1546 -5.4435 -1.6407 21 14 0.7048 -5.5227 -0.3611 22 1 -0.0647 -6.5985 -1.0363 23 1 1.3727 -6.0742 0.8452 24 1 -0.2182 -4.4307 0.0398 25 1 -0.3633 -1.0268 0.0411 26 1 -0.3633 0.5490 0.8687 27 1 -0.3633 0.4779 -0.9098 28 1 1.4549 -1.6556 1.4389 29 1 2.1373 -0.1324 2.1012 30 1 3.8162 -2.0996 1.2438 31 1 4.1954 -0.3872 0.8727 32 1 3.1089 -2.5406 -0.9319 33 1 4.1076 -1.1208 -1.3456 34 1 -1.4566 -0.4990 -3.0288 35 1 -3.2643 -2.1674 -3.0291 36 1 -2.7611 -4.5510 -2.6849 37 1 -0.4442 -5.2875 -2.3366 38 1 3.3456 -6.2337 -1.1117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601360000.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:51 Heat of formation + Delta-G solvation = -77.070038 kcal Electronic energy + Delta-G solvation = -23466.343440 eV Core-core repulsion = 20206.309196 eV Total energy + Delta-G solvation = -3260.034243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.69301 -39.37637 -38.19775 -36.74564 -35.68798 -32.52528 -32.31428 -31.75311 -31.63588 -27.23625 -26.40694 -23.83047 -22.98608 -22.71541 -21.87847 -19.64815 -19.53469 -18.71635 -17.80422 -17.25386 -17.06496 -16.44214 -15.88928 -15.49173 -15.28334 -14.88907 -14.78861 -14.57759 -14.50908 -14.06307 -13.61953 -13.53738 -13.25241 -13.15797 -12.99502 -12.93764 -12.72306 -12.69570 -12.44580 -12.32343 -12.16659 -11.87744 -11.72429 -11.56353 -11.42797 -11.21354 -11.00169 -9.98264 -9.69527 -9.59944 -9.01205 -6.71668 -0.25886 0.35584 0.78639 1.23295 1.35423 1.45135 2.05460 2.24579 2.48050 2.94593 3.31612 3.50854 3.71295 3.98426 4.10826 4.20413 4.30664 4.34637 4.45167 4.59849 4.63834 4.69114 4.76921 4.90419 4.93173 4.96612 5.05904 5.14521 5.20902 5.27852 5.32495 5.39156 5.44144 5.50256 5.56207 5.69290 5.81115 5.84299 6.07934 6.27284 6.53452 6.68911 8.02175 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013338 B = 0.010703 C = 0.008096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.817281 B = 2615.447863 C = 3457.681796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.142 3.858 3 H 0.089 0.911 4 C -0.117 4.117 5 C -0.118 4.118 6 C 0.102 3.898 7 N -1.002 6.002 8 S 2.727 3.273 9 O -0.999 6.999 10 O -1.009 7.009 11 C -0.780 4.780 12 C 0.006 3.994 13 C -0.250 4.250 14 C -0.040 4.040 15 C -0.260 4.260 16 C 0.150 3.850 17 C -0.481 4.481 18 H 0.096 0.904 19 C 0.067 3.933 20 N -0.807 5.807 21 Si 0.951 3.049 22 H -0.260 1.260 23 H -0.268 1.268 24 H -0.248 1.248 25 H 0.052 0.948 26 H 0.104 0.896 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.126 0.874 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.106 0.894 38 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.963 4.783 9.536 11.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.023 4.023 7 N -0.841 5.841 8 S 2.826 3.174 9 O -0.990 6.990 10 O -1.000 7.000 11 C -0.874 4.874 12 C -0.014 4.014 13 C -0.270 4.270 14 C -0.059 4.059 15 C -0.280 4.280 16 C 0.145 3.855 17 C -0.508 4.508 18 H 0.114 0.886 19 C -0.154 4.154 20 N -0.430 5.430 21 Si 0.774 3.226 22 H -0.185 1.185 23 H -0.194 1.194 24 H -0.171 1.171 25 H 0.072 0.928 26 H 0.123 0.877 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.144 0.856 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.124 0.876 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.429 5.162 8.784 10.750 hybrid contribution -0.468 -1.261 -0.007 1.346 sum -3.897 3.900 8.777 10.365 Atomic orbital electron populations 1.22415 0.94904 1.02856 1.04384 1.21906 0.94071 0.95717 0.84538 0.89272 1.22886 0.95433 1.00347 0.96893 1.22595 0.98105 1.02848 0.92163 1.22070 0.85301 0.97451 0.97438 1.58359 1.38246 1.61017 1.26489 1.00059 0.72953 0.72717 0.71642 1.93408 1.77994 1.41624 1.85976 1.93443 1.60344 1.82245 1.63968 1.30125 1.13005 1.10385 1.33883 1.20677 0.91109 0.99305 0.90260 1.20968 0.98966 0.93004 1.14044 1.21272 0.95599 0.96496 0.92511 1.21349 0.94430 0.98176 1.14013 1.17236 0.93033 0.90005 0.85238 1.20192 0.93234 1.09546 1.27858 0.88630 1.26743 0.97651 0.93907 0.97126 1.69708 1.24047 1.16090 1.33160 0.85710 0.79019 0.79926 0.77949 1.18533 1.19411 1.17125 0.92842 0.87723 0.92374 0.91509 0.86813 0.89841 0.88834 0.91263 0.93162 0.85572 0.84453 0.84558 0.87615 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.54 8.59 71.98 0.62 -4.93 16 2 C 0.14 4.26 3.69 45.54 0.17 4.42 16 3 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 4 C -0.12 -2.84 6.51 32.06 0.21 -2.63 16 5 C -0.12 -3.11 6.95 31.78 0.22 -2.89 16 6 C 0.10 3.84 6.34 86.73 0.55 4.39 16 7 N -1.00 -38.89 3.49 -483.98 -1.69 -40.58 16 8 S 2.73 125.66 4.59 -56.49 -0.26 125.40 16 9 O -1.00 -45.44 14.92 -128.00 -1.91 -47.35 16 10 O -1.01 -54.22 15.26 -128.00 -1.95 -56.18 16 11 C -0.78 -36.45 5.60 22.73 0.13 -36.33 16 12 C 0.01 0.26 9.53 22.22 0.21 0.47 16 13 C -0.25 -9.35 10.05 22.46 0.23 -9.12 16 14 C -0.04 -1.56 10.02 22.22 0.22 -1.34 16 15 C -0.26 -11.76 7.18 22.73 0.16 -11.60 16 16 C 0.15 7.42 5.12 -21.29 -0.11 7.31 16 17 C -0.48 -25.19 6.56 23.46 0.15 -25.04 16 18 H 0.10 5.55 4.85 -2.91 -0.01 5.54 16 19 C 0.07 3.23 5.02 85.26 0.43 3.66 16 20 N -0.81 -39.85 13.93 21.83 0.30 -39.55 16 21 Si 0.95 38.37 24.50 68.60 1.68 40.05 16 22 H -0.26 -10.08 6.68 99.48 0.66 -9.42 16 23 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 24 H -0.25 -10.21 6.86 99.48 0.68 -9.52 16 25 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 26 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.06 1.92 6.18 -2.38 -0.01 1.91 16 28 H 0.07 1.77 8.06 -2.39 -0.02 1.75 16 29 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.07 3.04 4.95 -2.38 -0.01 3.03 16 33 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.13 4.79 7.33 -2.91 -0.02 4.77 16 35 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 36 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 37 H 0.11 4.67 4.63 -2.91 -0.01 4.66 16 38 H 0.30 13.15 8.30 -92.71 -0.77 12.38 16 Total: -1.00 -64.05 305.91 0.37 -63.67 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 1.01 Total: 28.15 kcal Atomic # 6 Polarization: -76.81 SS G_CDS: 3.19 Total: -73.62 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -1.38 Total: -80.12 kcal Atomic # 8 Polarization: -99.67 SS G_CDS: -3.86 Total: -103.53 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 1.68 Total: 40.05 kcal Atomic # 16 Polarization: 125.66 SS G_CDS: -0.26 Total: 125.40 kcal Total: -64.05 0.37 -63.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601360000.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.396 kcal (2) G-P(sol) polarization free energy of solvation -64.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds