Wall clock time and date at job start Tue Mar 31 2020 06:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50698 * 119.99753 * 2 1 4 4 C 1.31001 * 119.99926 * 180.02562 * 2 1 3 5 5 C 1.50693 * 120.00209 * 355.16033 * 4 2 1 6 6 N 1.46499 * 109.47534 * 125.22136 * 5 4 2 7 7 S 1.65594 * 120.00302 * 164.96617 * 6 5 4 8 8 O 1.42105 * 106.40154 * 176.57894 * 7 6 5 9 9 O 1.42095 * 106.40417 * 309.49898 * 7 6 5 10 10 C 1.76206 * 107.21995 * 63.03953 * 7 6 5 11 11 C 1.37630 * 120.12627 * 244.28503 * 10 7 6 12 12 C 1.38614 * 120.25045 * 179.97438 * 11 10 7 13 13 C 1.38656 * 120.49802 * 0.02622 * 12 11 10 14 14 C 1.37602 * 120.25117 * 0.02562 * 13 12 11 15 15 C 1.40692 * 120.12630 * 64.00754 * 10 7 6 16 16 C 1.41401 * 120.24542 * 0.02562 * 15 10 7 17 17 H 1.07995 * 119.99751 * 327.87144 * 16 15 10 18 18 C 1.39946 * 119.99969 * 147.87265 * 16 15 10 19 19 N 1.30825 * 120.00154 * 348.58473 * 18 16 15 20 20 Si 1.86797 * 120.00098 * 168.58983 * 18 16 15 21 21 H 1.48500 * 109.47062 * 59.99741 * 20 18 16 22 22 H 1.48497 * 109.47519 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47249 * 300.00076 * 20 18 16 24 24 H 1.08997 * 109.46972 * 244.40167 * 1 2 3 25 25 H 1.09004 * 109.47082 * 4.40033 * 1 2 3 26 26 H 1.09000 * 109.47082 * 124.40172 * 1 2 3 27 27 H 1.09006 * 109.46993 * 239.99864 * 3 2 1 28 28 H 1.08993 * 109.47339 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.46924 * 120.00515 * 3 2 1 30 30 H 1.08003 * 119.99794 * 175.15955 * 4 2 1 31 31 H 1.09003 * 109.46954 * 5.22069 * 5 4 2 32 32 H 1.08997 * 109.47365 * 245.22088 * 5 4 2 33 33 H 0.97001 * 119.99553 * 344.68924 * 6 5 4 34 34 H 1.08004 * 119.87957 * 0.02562 * 11 10 7 35 35 H 1.07995 * 119.75583 * 180.02562 * 12 11 10 36 36 H 1.08001 * 119.87886 * 180.02562 * 13 12 11 37 37 H 1.08002 * 120.12900 * 179.97438 * 14 13 12 38 38 H 0.96994 * 120.00404 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4126 -2.4373 0.1090 6 7 1.7759 -3.3056 -1.0136 7 16 1.4076 -4.9194 -0.9652 8 8 1.8110 -5.4607 -2.2156 9 8 1.8868 -5.4031 0.2820 10 6 -0.3485 -5.0522 -0.9088 11 6 -0.9652 -5.5944 0.1957 12 6 -2.3465 -5.6996 0.2430 13 6 -3.1224 -5.2615 -0.8194 14 6 -2.5273 -4.7171 -1.9342 15 6 -1.1260 -4.5990 -1.9902 16 6 -0.5038 -4.0353 -3.1280 17 1 0.4165 -3.4805 -3.0208 18 6 -1.0806 -4.1963 -4.3929 19 7 -2.0614 -5.0454 -4.5612 20 14 -0.4498 -3.1990 -5.8409 21 1 0.9875 -3.5004 -6.0609 22 1 -1.2214 -3.5527 -7.0593 23 1 -0.6135 -1.7513 -5.5537 24 1 -0.3633 -0.4440 0.9268 25 1 -0.3633 1.0247 -0.0788 26 1 -0.3633 -0.5806 -0.8479 27 1 2.8871 1.3629 -0.8900 28 1 1.5522 2.1335 0.0005 29 1 2.8872 1.3628 0.8899 30 1 3.2392 -1.1361 -0.0794 31 1 0.3403 -2.2427 0.0856 32 1 1.6724 -2.9282 1.0469 33 1 2.2286 -2.9344 -1.7870 34 1 -0.3707 -5.9385 1.0292 35 1 -2.8221 -6.1260 1.1138 36 1 -4.1979 -5.3479 -0.7717 37 1 -3.1336 -4.3769 -2.7608 38 1 -2.4610 -5.1574 -5.4379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601401229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:18 Heat of formation + Delta-G solvation = -55.116088 kcal Electronic energy + Delta-G solvation = -22118.496560 eV Core-core repulsion = 18859.414311 eV Total energy + Delta-G solvation = -3259.082249 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -37.60674 -37.15716 -36.15948 -34.79835 -33.95667 -33.69419 -30.22005 -29.58299 -28.32548 -27.53946 -25.52347 -23.48871 -21.65985 -21.13879 -18.74857 -17.85128 -17.67644 -16.67950 -16.16014 -15.72021 -15.31226 -14.78076 -14.37735 -14.19484 -13.93185 -13.50571 -13.24492 -13.15654 -12.73001 -12.68866 -12.38266 -11.95186 -11.85071 -11.68644 -11.50588 -11.29137 -11.17921 -11.14062 -11.04197 -10.97679 -10.76743 -10.60456 -10.51136 -9.89197 -9.47435 -9.39253 -8.92222 -8.50816 -8.03547 -7.58264 -7.01125 -4.75136 1.52309 2.23739 2.33895 2.73969 2.97244 3.00243 3.12273 3.79399 4.05323 4.43020 4.75435 4.85143 4.97854 5.27041 5.34844 5.53336 5.55127 5.57823 5.69399 5.83739 5.86488 5.89980 6.03861 6.09302 6.19441 6.23364 6.36093 6.44507 6.72825 6.79980 6.92591 6.94919 7.08219 7.31143 7.48396 7.58048 7.68660 7.79205 7.89720 8.28039 8.52272 8.64141 9.93942 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.007445 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.163074 B = 3759.885435 C = 4611.238013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.119 4.119 3 C -0.116 4.116 4 C -0.172 4.172 5 C 0.150 3.850 6 N -1.118 6.118 7 S 2.700 3.300 8 O -0.964 6.964 9 O -0.999 6.999 10 C -0.772 4.772 11 C -0.004 4.004 12 C -0.248 4.248 13 C -0.076 4.076 14 C -0.156 4.156 15 C 0.190 3.810 16 C -0.453 4.453 17 H 0.087 0.913 18 C 0.083 3.917 19 N -0.779 5.779 20 Si 0.912 3.088 21 H -0.257 1.257 22 H -0.275 1.275 23 H -0.260 1.260 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.411 0.589 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.969 9.815 4.443 11.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.120 4.120 3 C -0.173 4.173 4 C -0.192 4.192 5 C 0.024 3.976 6 N -0.875 5.875 7 S 2.797 3.203 8 O -0.954 6.954 9 O -0.990 6.990 10 C -0.867 4.867 11 C -0.024 4.024 12 C -0.269 4.269 13 C -0.095 4.095 14 C -0.175 4.175 15 C 0.186 3.814 16 C -0.481 4.481 17 H 0.105 0.895 18 C -0.138 4.138 19 N -0.403 5.403 20 Si 0.735 3.265 21 H -0.181 1.181 22 H -0.200 1.200 23 H -0.184 1.184 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.130 0.870 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.245 0.755 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.138 0.862 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.373 8.939 4.425 10.529 hybrid contribution -0.442 0.682 -1.029 1.311 sum 2.932 9.621 3.396 10.616 Atomic orbital electron populations 1.20977 0.92012 1.02268 1.02999 1.21689 0.96100 0.94832 0.99395 1.20855 0.99815 0.94765 1.01882 1.22651 0.99645 0.93279 1.03610 1.20264 0.99006 0.89060 0.89264 1.55653 1.75680 1.28448 1.27733 1.01087 0.74895 0.71672 0.72605 1.93546 1.82846 1.75756 1.43284 1.93443 1.80793 1.78819 1.45906 1.29936 1.22358 1.27484 1.06901 1.20274 0.94695 0.92927 0.94528 1.20496 0.93655 1.12769 0.99934 1.20899 0.97656 0.96848 0.94122 1.21423 0.95023 1.03924 0.97167 1.16988 0.91622 0.84072 0.88752 1.19786 1.07938 1.29240 0.91151 0.89472 1.25901 0.93469 0.93617 1.00856 1.69765 1.18957 1.25605 1.25943 0.86267 0.80645 0.80518 0.79040 1.18079 1.19952 1.18426 0.91334 0.92329 0.90342 0.91679 0.92055 0.91709 0.86964 0.90924 0.90253 0.75550 0.87383 0.88701 0.88808 0.86215 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 8.54 36.01 0.31 -1.19 16 2 C -0.12 -1.41 6.05 -101.07 -0.61 -2.02 16 3 C -0.12 -1.09 10.05 36.00 0.36 -0.73 16 4 C -0.17 -2.23 9.29 -36.03 -0.33 -2.56 16 5 C 0.15 2.32 6.45 -5.20 -0.03 2.29 16 6 N -1.12 -19.81 5.01 -11.66 -0.06 -19.87 16 7 S 2.70 59.55 4.96 -107.50 -0.53 59.02 16 8 O -0.96 -24.26 16.72 -57.17 -0.96 -25.22 16 9 O -1.00 -22.94 16.51 -57.17 -0.94 -23.88 16 10 C -0.77 -18.41 5.90 -38.88 -0.23 -18.64 16 11 C 0.00 -0.10 9.53 -39.66 -0.38 -0.48 16 12 C -0.25 -5.38 10.05 -39.29 -0.39 -5.78 16 13 C -0.08 -1.69 10.02 -39.66 -0.40 -2.09 16 14 C -0.16 -3.81 8.64 -38.87 -0.34 -4.14 16 15 C 0.19 4.80 5.51 -106.82 -0.59 4.22 16 16 C -0.45 -11.28 7.55 -37.74 -0.28 -11.56 16 17 H 0.09 2.02 5.91 -52.49 -0.31 1.71 16 18 C 0.08 1.99 5.22 -17.34 -0.09 1.90 16 19 N -0.78 -19.31 11.09 55.55 0.62 -18.69 16 20 Si 0.91 18.04 29.57 -169.99 -5.03 13.01 16 21 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 24 H 0.07 0.79 7.86 -51.93 -0.41 0.38 16 25 H 0.06 0.60 7.71 -51.93 -0.40 0.20 16 26 H 0.08 1.07 7.65 -51.93 -0.40 0.67 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.51 7.70 -51.93 -0.40 0.11 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.11 1.32 8.05 -52.48 -0.42 0.90 16 31 H 0.07 1.14 5.79 -51.93 -0.30 0.84 16 32 H 0.08 1.22 7.80 -51.93 -0.40 0.81 16 33 H 0.41 6.59 8.42 -34.47 -0.29 6.30 16 34 H 0.11 2.26 7.33 -52.48 -0.38 1.88 16 35 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.12 2.95 6.49 -52.49 -0.34 2.61 16 38 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -30.19 329.38 -9.83 -40.03 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -4.88 Total: 11.43 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: -3.01 Total: -40.78 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.56 Total: -38.56 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -1.90 Total: -49.10 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Atomic # 16 Polarization: 59.55 SS G_CDS: -0.53 Total: 59.02 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.19 -9.83 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601401229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.091 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds