Wall clock time and date at job start Tue Mar 31 2020 06:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50698 * 119.99753 * 2 1 4 4 C 1.31001 * 119.99926 * 180.02562 * 2 1 3 5 5 C 1.50693 * 120.00209 * 355.16033 * 4 2 1 6 6 N 1.46499 * 109.47534 * 125.22136 * 5 4 2 7 7 S 1.65594 * 120.00302 * 164.96617 * 6 5 4 8 8 O 1.42105 * 106.40154 * 176.57894 * 7 6 5 9 9 O 1.42095 * 106.40417 * 309.49898 * 7 6 5 10 10 C 1.76206 * 107.21995 * 63.03953 * 7 6 5 11 11 C 1.37630 * 120.12627 * 244.28503 * 10 7 6 12 12 C 1.38614 * 120.25045 * 179.97438 * 11 10 7 13 13 C 1.38656 * 120.49802 * 0.02622 * 12 11 10 14 14 C 1.37602 * 120.25117 * 0.02562 * 13 12 11 15 15 C 1.40692 * 120.12630 * 64.00754 * 10 7 6 16 16 C 1.41401 * 120.24542 * 0.02562 * 15 10 7 17 17 H 1.07995 * 119.99751 * 327.87144 * 16 15 10 18 18 C 1.39946 * 119.99969 * 147.87265 * 16 15 10 19 19 N 1.30825 * 120.00154 * 348.58473 * 18 16 15 20 20 Si 1.86797 * 120.00098 * 168.58983 * 18 16 15 21 21 H 1.48500 * 109.47062 * 59.99741 * 20 18 16 22 22 H 1.48497 * 109.47519 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47249 * 300.00076 * 20 18 16 24 24 H 1.08997 * 109.46972 * 244.40167 * 1 2 3 25 25 H 1.09004 * 109.47082 * 4.40033 * 1 2 3 26 26 H 1.09000 * 109.47082 * 124.40172 * 1 2 3 27 27 H 1.09006 * 109.46993 * 239.99864 * 3 2 1 28 28 H 1.08993 * 109.47339 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.46924 * 120.00515 * 3 2 1 30 30 H 1.08003 * 119.99794 * 175.15955 * 4 2 1 31 31 H 1.09003 * 109.46954 * 5.22069 * 5 4 2 32 32 H 1.08997 * 109.47365 * 245.22088 * 5 4 2 33 33 H 0.97001 * 119.99553 * 344.68924 * 6 5 4 34 34 H 1.08004 * 119.87957 * 0.02562 * 11 10 7 35 35 H 1.07995 * 119.75583 * 180.02562 * 12 11 10 36 36 H 1.08001 * 119.87886 * 180.02562 * 13 12 11 37 37 H 1.08002 * 120.12900 * 179.97438 * 14 13 12 38 38 H 0.96994 * 120.00404 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4126 -2.4373 0.1090 6 7 1.7759 -3.3056 -1.0136 7 16 1.4076 -4.9194 -0.9652 8 8 1.8110 -5.4607 -2.2156 9 8 1.8868 -5.4031 0.2820 10 6 -0.3485 -5.0522 -0.9088 11 6 -0.9652 -5.5944 0.1957 12 6 -2.3465 -5.6996 0.2430 13 6 -3.1224 -5.2615 -0.8194 14 6 -2.5273 -4.7171 -1.9342 15 6 -1.1260 -4.5990 -1.9902 16 6 -0.5038 -4.0353 -3.1280 17 1 0.4165 -3.4805 -3.0208 18 6 -1.0806 -4.1963 -4.3929 19 7 -2.0614 -5.0454 -4.5612 20 14 -0.4498 -3.1990 -5.8409 21 1 0.9875 -3.5004 -6.0609 22 1 -1.2214 -3.5527 -7.0593 23 1 -0.6135 -1.7513 -5.5537 24 1 -0.3633 -0.4440 0.9268 25 1 -0.3633 1.0247 -0.0788 26 1 -0.3633 -0.5806 -0.8479 27 1 2.8871 1.3629 -0.8900 28 1 1.5522 2.1335 0.0005 29 1 2.8872 1.3628 0.8899 30 1 3.2392 -1.1361 -0.0794 31 1 0.3403 -2.2427 0.0856 32 1 1.6724 -2.9282 1.0469 33 1 2.2286 -2.9344 -1.7870 34 1 -0.3707 -5.9385 1.0292 35 1 -2.8221 -6.1260 1.1138 36 1 -4.1979 -5.3479 -0.7717 37 1 -3.1336 -4.3769 -2.7608 38 1 -2.4610 -5.1574 -5.4379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601401229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:17 Heat of formation + Delta-G solvation = -73.933141 kcal Electronic energy + Delta-G solvation = -22119.312529 eV Core-core repulsion = 18859.414311 eV Total energy + Delta-G solvation = -3259.898217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.38615 -38.29456 -37.94734 -36.66346 -35.66724 -35.04028 -32.01755 -31.38138 -29.33765 -28.50830 -27.33467 -24.62423 -23.44492 -22.93980 -20.35173 -19.49547 -19.06227 -18.31958 -17.73568 -17.30249 -16.96691 -16.07324 -16.00310 -15.71756 -15.13045 -14.93685 -14.84541 -14.46364 -14.44435 -13.95120 -13.59725 -13.27124 -13.23370 -13.15940 -12.99135 -12.94236 -12.84465 -12.78540 -12.64862 -12.50008 -12.24774 -12.16581 -11.74344 -11.64964 -11.20153 -11.12242 -10.32775 -9.84195 -9.60064 -9.40682 -8.78522 -6.60800 -0.17696 0.52769 0.97423 1.21306 1.36068 1.47357 1.51621 2.16305 2.43729 2.65482 2.98971 3.46557 3.76918 3.97344 4.09394 4.28306 4.33738 4.49001 4.50383 4.56038 4.71120 4.76041 4.84878 4.93000 4.98199 5.01352 5.12072 5.13644 5.19598 5.26716 5.30869 5.52354 5.70389 5.76947 5.81376 5.95973 5.99184 6.08835 6.26776 6.47022 6.69437 6.82761 8.19447 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.007445 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.163074 B = 3759.885435 C = 4611.238013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.107 4.107 3 C -0.116 4.116 4 C -0.188 4.188 5 C 0.145 3.855 6 N -1.106 6.106 7 S 2.718 3.282 8 O -1.000 7.000 9 O -1.010 7.010 10 C -0.788 4.788 11 C -0.019 4.019 12 C -0.246 4.246 13 C -0.074 4.074 14 C -0.182 4.182 15 C 0.167 3.833 16 C -0.481 4.481 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.812 5.812 20 Si 0.972 3.028 21 H -0.262 1.262 22 H -0.264 1.264 23 H -0.245 1.245 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.420 0.580 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.203 11.470 4.955 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.109 4.109 3 C -0.172 4.172 4 C -0.208 4.208 5 C 0.020 3.980 6 N -0.867 5.867 7 S 2.815 3.185 8 O -0.990 6.990 9 O -1.000 7.000 10 C -0.882 4.882 11 C -0.038 4.038 12 C -0.266 4.266 13 C -0.093 4.093 14 C -0.202 4.202 15 C 0.162 3.838 16 C -0.510 4.510 17 H 0.112 0.888 18 C -0.177 4.177 19 N -0.437 5.437 20 Si 0.792 3.208 21 H -0.186 1.186 22 H -0.188 1.188 23 H -0.168 1.168 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.144 0.856 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.255 0.745 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.127 0.873 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.587 10.589 4.950 12.227 hybrid contribution -0.565 0.167 -1.049 1.203 sum 3.022 10.756 3.901 11.834 Atomic orbital electron populations 1.21020 0.92407 1.03147 1.02159 1.21977 0.96087 0.95758 0.97070 1.20908 1.00089 0.93417 1.02822 1.22565 1.00198 0.92128 1.05880 1.20425 0.99222 0.90064 0.88273 1.55299 1.75261 1.27213 1.28897 1.00381 0.74085 0.72479 0.71569 1.93489 1.83220 1.77445 1.44854 1.93418 1.80727 1.79788 1.46098 1.30204 1.23383 1.27568 1.07043 1.20604 0.95642 0.92869 0.94705 1.20908 0.93384 1.11616 1.00734 1.21253 0.99374 0.95388 0.93297 1.21482 0.95012 1.05692 0.98019 1.17291 0.92301 0.84699 0.89480 1.20081 1.08753 1.30266 0.91883 0.88847 1.26760 0.93543 0.94269 1.03148 1.69811 1.20126 1.26767 1.26965 0.85378 0.79599 0.79772 0.76065 1.18625 1.18786 1.16795 0.91199 0.90387 0.92434 0.90967 0.90849 0.90410 0.85560 0.91511 0.90281 0.74486 0.85944 0.85340 0.85847 0.87272 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.54 71.24 0.61 -2.34 16 2 C -0.11 -2.33 6.05 -16.49 -0.10 -2.43 16 3 C -0.12 -1.82 10.05 71.24 0.72 -1.10 16 4 C -0.19 -4.59 9.29 25.64 0.24 -4.35 16 5 C 0.15 4.44 6.45 85.63 0.55 4.99 16 6 N -1.11 -39.13 5.01 -190.80 -0.96 -40.09 16 7 S 2.72 121.03 4.96 -56.49 -0.28 120.75 16 8 O -1.00 -51.30 16.72 -128.00 -2.14 -53.45 16 9 O -1.01 -46.27 16.51 -128.00 -2.11 -48.38 16 10 C -0.79 -37.97 5.90 22.73 0.13 -37.83 16 11 C -0.02 -0.83 9.53 22.22 0.21 -0.62 16 12 C -0.25 -10.29 10.05 22.46 0.23 -10.06 16 13 C -0.07 -3.24 10.02 22.22 0.22 -3.01 16 14 C -0.18 -9.05 8.64 22.73 0.20 -8.85 16 15 C 0.17 8.58 5.51 -21.29 -0.12 8.47 16 16 C -0.48 -24.48 7.55 23.46 0.18 -24.30 16 17 H 0.09 4.42 5.91 -2.91 -0.02 4.40 16 18 C 0.04 1.97 5.22 85.26 0.45 2.42 16 19 N -0.81 -41.06 11.09 21.83 0.24 -40.82 16 20 Si 0.97 36.83 29.57 68.60 2.03 38.86 16 21 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 23 H -0.24 -8.56 7.11 99.48 0.71 -7.85 16 24 H 0.07 1.54 7.86 -2.39 -0.02 1.52 16 25 H 0.08 1.43 7.71 -2.39 -0.02 1.41 16 26 H 0.06 1.55 7.65 -2.39 -0.02 1.53 16 27 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.07 0.99 7.70 -2.39 -0.02 0.97 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.13 2.71 8.05 -2.91 -0.02 2.69 16 31 H 0.07 2.11 5.79 -2.39 -0.01 2.10 16 32 H 0.08 2.39 7.80 -2.39 -0.02 2.37 16 33 H 0.42 13.37 8.42 -96.75 -0.81 12.56 16 34 H 0.12 5.02 7.33 -2.91 -0.02 4.99 16 35 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 37 H 0.11 5.55 6.49 -2.91 -0.02 5.53 16 38 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 Total: -1.00 -64.89 329.38 0.56 -64.33 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: 0.26 Total: 37.81 kcal Atomic # 6 Polarization: -82.54 SS G_CDS: 3.51 Total: -79.03 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -0.71 Total: -80.90 kcal Atomic # 8 Polarization: -97.57 SS G_CDS: -4.25 Total: -101.82 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 16 Polarization: 121.03 SS G_CDS: -0.28 Total: 120.75 kcal Total: -64.89 0.56 -64.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601401229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.599 kcal (2) G-P(sol) polarization free energy of solvation -64.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds