Wall clock time and date at job start Tue Mar 31 2020 06:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47089 * 2 1 4 4 H 1.08999 * 115.56088 * 29.31045 * 3 2 1 5 5 C 1.53006 * 117.49939 * 243.62476 * 3 2 1 6 6 C 1.52999 * 117.50146 * 175.00102 * 3 2 1 7 7 H 1.09001 * 117.51570 * 0.02562 * 6 3 2 8 8 N 1.46499 * 117.50077 * 214.98100 * 6 3 2 9 9 S 1.65598 * 120.00279 * 144.83041 * 8 6 3 10 10 O 1.42104 * 106.40186 * 312.13668 * 9 8 6 11 11 O 1.42099 * 106.40181 * 179.21327 * 9 8 6 12 12 C 1.76202 * 107.21633 * 65.67266 * 9 8 6 13 13 C 1.37631 * 120.12882 * 245.34771 * 12 9 8 14 14 C 1.38614 * 120.24903 * 180.02562 * 13 12 9 15 15 C 1.38656 * 120.49964 * 359.97438 * 14 13 12 16 16 C 1.37599 * 120.24939 * 359.97438 * 15 14 13 17 17 C 1.40700 * 120.12705 * 65.37271 * 12 9 8 18 18 C 1.41397 * 120.24193 * 359.95140 * 17 12 9 19 19 H 1.07998 * 120.00118 * 329.92011 * 18 17 12 20 20 C 1.39947 * 120.00141 * 149.91973 * 18 17 12 21 21 N 1.30827 * 119.99656 * 348.87629 * 20 18 17 22 22 Si 1.86794 * 120.00319 * 168.87296 * 20 18 17 23 23 H 1.48499 * 109.46993 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46969 * 120.00149 * 22 20 18 25 25 H 1.48499 * 109.47261 * 239.99763 * 22 20 18 26 26 H 1.08997 * 109.46720 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46797 * 299.99881 * 1 2 3 28 28 H 1.09000 * 109.47137 * 60.00467 * 1 2 3 29 29 H 1.09002 * 109.47365 * 240.00404 * 2 1 3 30 30 H 1.08990 * 109.47439 * 120.00022 * 2 1 3 31 31 H 1.09001 * 117.49675 * 145.01881 * 5 3 2 32 32 H 1.09002 * 117.51734 * 359.97438 * 5 3 2 33 33 H 0.97007 * 119.99419 * 324.83295 * 8 6 3 34 34 H 1.08002 * 119.87934 * 0.02562 * 13 12 9 35 35 H 1.08000 * 119.75333 * 180.02562 * 14 13 12 36 36 H 1.08000 * 119.87507 * 180.28046 * 15 14 13 37 37 H 1.08003 * 120.12708 * 179.97438 * 16 15 14 38 38 H 0.97002 * 119.99958 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8439 1.9076 -1.2159 6 6 3.5501 1.6580 0.1183 7 1 4.1806 0.7722 0.1956 8 7 4.0096 2.8285 0.8698 9 16 5.3922 2.7397 1.7770 10 8 5.2938 1.5466 2.5426 11 8 5.5738 4.0235 2.3584 12 6 6.7346 2.5047 0.6601 13 6 7.4564 1.3332 0.6843 14 6 8.5133 1.1459 -0.1929 15 6 8.8554 2.1338 -1.1037 16 6 8.1470 3.3127 -1.1463 17 6 7.0731 3.5144 -0.2595 18 6 6.3383 4.7219 -0.2938 19 1 5.2936 4.7264 -0.0198 20 6 6.9647 5.9114 -0.6827 21 7 8.2666 5.9558 -0.8038 22 14 5.9420 7.4357 -1.0291 23 1 4.5048 7.1253 -0.8208 24 1 6.3511 8.5261 -0.1077 25 1 6.1573 7.8676 -2.4335 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.7212 2.9428 -1.5344 32 1 3.0101 1.1860 -2.0158 33 1 3.5039 3.6557 0.8361 34 1 7.1985 0.5567 1.3893 35 1 9.0740 0.2233 -0.1672 36 1 9.6778 1.9755 -1.7855 37 1 8.4154 4.0810 -1.8563 38 1 8.7008 6.7803 -1.0731 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601410339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:16 Heat of formation + Delta-G solvation = -66.349450 kcal Electronic energy + Delta-G solvation = -22036.349195 eV Core-core repulsion = 18776.779831 eV Total energy + Delta-G solvation = -3259.569364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.39899 -39.19099 -38.01625 -36.68166 -35.66777 -34.35971 -32.05608 -31.67084 -31.34253 -27.34938 -24.63746 -23.45465 -23.10487 -22.79723 -21.40055 -20.28983 -19.50413 -18.52787 -17.88949 -17.31153 -17.07158 -16.09522 -16.00927 -15.42628 -15.27820 -15.08092 -14.92637 -14.47271 -13.95206 -13.64184 -13.55844 -13.26386 -13.10044 -12.98881 -12.94698 -12.85161 -12.81513 -12.76103 -12.51206 -12.42445 -12.11603 -12.04987 -11.84350 -11.64086 -11.20111 -11.04614 -10.81064 -9.84443 -9.72251 -9.41648 -8.79048 -6.61091 -0.19412 0.53024 0.96980 1.36119 1.49170 1.51226 2.15484 2.28908 2.63693 2.88085 3.05981 3.46532 3.72497 3.92669 3.95872 4.09065 4.20521 4.33817 4.37491 4.50287 4.56952 4.69732 4.74208 4.90680 4.97627 5.04304 5.14166 5.22302 5.27886 5.29940 5.32901 5.40828 5.52330 5.56797 5.70632 5.82055 6.00066 6.08440 6.18140 6.47393 6.68596 6.83387 8.18143 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.006439 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.727855 B = 4347.528254 C = 5162.929364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.145 4.145 4 H 0.112 0.888 5 C -0.176 4.176 6 C 0.069 3.931 7 H 0.126 0.874 8 N -1.082 6.082 9 S 2.722 3.278 10 O -1.007 7.007 11 O -0.998 6.998 12 C -0.789 4.789 13 C -0.018 4.018 14 C -0.248 4.248 15 C -0.076 4.076 16 C -0.184 4.184 17 C 0.165 3.835 18 C -0.476 4.476 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.811 5.811 22 Si 0.976 3.024 23 H -0.248 1.248 24 H -0.270 1.270 25 H -0.255 1.255 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.419 0.581 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.691 -5.727 -3.753 12.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C -0.166 4.166 4 H 0.130 0.870 5 C -0.215 4.215 6 C -0.039 4.039 7 H 0.144 0.856 8 N -0.838 5.838 9 S 2.818 3.182 10 O -0.997 6.997 11 O -0.989 6.989 12 C -0.883 4.883 13 C -0.038 4.038 14 C -0.268 4.268 15 C -0.094 4.094 16 C -0.204 4.204 17 C 0.160 3.840 18 C -0.504 4.504 19 H 0.110 0.890 20 C -0.179 4.179 21 N -0.435 5.435 22 Si 0.796 3.204 23 H -0.171 1.171 24 H -0.195 1.195 25 H -0.179 1.179 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.255 0.745 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.353 -5.664 -2.832 12.136 hybrid contribution 0.403 1.135 -0.697 1.392 sum -9.950 -4.529 -3.529 11.487 Atomic orbital electron populations 1.21714 0.94283 1.02193 1.02025 1.21187 0.96948 0.92873 1.02490 1.23012 0.92499 0.99497 1.01592 0.87028 1.23622 1.02776 1.03378 0.91733 1.21506 0.95846 0.89033 0.97490 0.85633 1.54895 1.42223 1.20355 1.66292 1.00315 0.72970 0.71668 0.73199 1.93428 1.87257 1.49864 1.69159 1.93493 1.86038 1.42417 1.76919 1.30182 1.27010 1.06850 1.24225 1.20594 0.93498 0.94052 0.95634 1.20902 1.02562 1.00976 1.02351 1.21257 0.97548 0.93409 0.97218 1.21530 0.99905 0.97301 1.01622 1.17309 0.90331 0.90050 0.86302 1.20129 0.98736 0.92442 1.39129 0.88965 1.26799 0.96098 1.03877 0.91154 1.69825 1.10962 1.30551 1.32183 0.85228 0.79882 0.76165 0.79126 1.17055 1.19475 1.17884 0.91751 0.92812 0.92224 0.90826 0.91816 0.88311 0.86908 0.74522 0.85902 0.85388 0.85926 0.87016 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.87 71.98 0.71 -1.55 16 2 C -0.10 -1.87 6.22 30.60 0.19 -1.68 16 3 C -0.15 -3.34 5.66 -10.79 -0.06 -3.40 16 4 H 0.11 2.42 8.07 -2.39 -0.02 2.40 16 5 C -0.18 -4.28 10.10 30.60 0.31 -3.98 16 6 C 0.07 2.07 6.19 44.99 0.28 2.35 16 7 H 0.13 3.86 8.10 -2.39 -0.02 3.84 16 8 N -1.08 -37.81 5.19 -169.38 -0.88 -38.69 16 9 S 2.72 120.13 4.95 -56.49 -0.28 119.85 16 10 O -1.01 -45.75 16.70 -128.00 -2.14 -47.89 16 11 O -1.00 -50.67 16.57 -128.00 -2.12 -52.79 16 12 C -0.79 -37.87 5.95 22.73 0.14 -37.73 16 13 C -0.02 -0.81 9.53 22.22 0.21 -0.59 16 14 C -0.25 -10.37 10.05 22.46 0.23 -10.15 16 15 C -0.08 -3.31 10.02 22.22 0.22 -3.09 16 16 C -0.18 -9.16 8.65 22.73 0.20 -8.97 16 17 C 0.16 8.48 5.53 -21.29 -0.12 8.37 16 18 C -0.48 -24.15 7.58 23.46 0.18 -23.97 16 19 H 0.09 4.36 5.82 -2.91 -0.02 4.34 16 20 C 0.04 1.85 5.24 85.26 0.45 2.30 16 21 N -0.81 -40.71 10.96 21.83 0.24 -40.47 16 22 Si 0.98 36.64 29.57 68.60 2.03 38.67 16 23 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 24 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 25 H -0.25 -8.84 7.11 99.48 0.71 -8.14 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 1.29 7.88 -2.39 -0.02 1.27 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.11 2.41 8.03 -2.39 -0.02 2.39 16 33 H 0.42 13.14 8.69 -96.74 -0.84 12.30 16 34 H 0.12 4.99 7.32 -2.91 -0.02 4.97 16 35 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 37 H 0.11 5.71 6.35 -2.91 -0.02 5.69 16 38 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 Total: -1.00 -64.31 331.25 0.01 -64.30 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: 0.23 Total: 39.11 kcal Atomic # 6 Polarization: -85.01 SS G_CDS: 2.93 Total: -82.09 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -0.64 Total: -79.16 kcal Atomic # 8 Polarization: -96.42 SS G_CDS: -4.26 Total: -100.68 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Atomic # 16 Polarization: 120.13 SS G_CDS: -0.28 Total: 119.85 kcal Total: -64.31 0.01 -64.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601410339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.044 kcal (2) G-P(sol) polarization free energy of solvation -64.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds