Wall clock time and date at job start Tue Mar 31 2020 07:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08999 * 109.46599 * 2 1 4 4 N 1.46496 * 109.47074 * 240.00304 * 2 1 3 5 5 S 1.65597 * 120.00535 * 93.67356 * 4 2 1 6 6 O 1.42099 * 106.40005 * 310.10190 * 5 4 2 7 7 O 1.42091 * 106.40338 * 177.18264 * 5 4 2 8 8 C 1.76202 * 107.21566 * 63.63898 * 5 4 2 9 9 C 1.37634 * 120.12671 * 244.32296 * 8 5 4 10 10 C 1.38620 * 120.24584 * 180.30170 * 9 8 5 11 11 C 1.38655 * 120.50037 * 359.44758 * 10 9 8 12 12 C 1.37600 * 120.24784 * 0.55083 * 11 10 9 13 13 C 1.40692 * 120.12585 * 64.35189 * 8 5 4 14 14 C 1.41396 * 120.24600 * 359.94896 * 13 8 5 15 15 H 1.08001 * 120.00238 * 330.81211 * 14 13 8 16 16 C 1.39949 * 119.99824 * 150.80520 * 14 13 8 17 17 N 1.30822 * 120.00381 * 346.90346 * 16 14 13 18 18 Si 1.86802 * 119.99638 * 166.90106 * 16 14 13 19 19 H 1.48498 * 109.47444 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47313 * 120.00376 * 18 16 14 21 21 H 1.48508 * 109.46970 * 240.00189 * 18 16 14 22 22 C 1.52998 * 109.46904 * 120.00056 * 2 1 3 23 23 C 1.53007 * 117.49993 * 8.62002 * 22 2 1 24 24 C 1.52995 * 60.00103 * 252.51210 * 23 22 2 25 25 H 1.09005 * 109.46661 * 60.00218 * 1 2 3 26 26 H 1.08996 * 109.46741 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47240 * 299.99794 * 1 2 3 28 28 H 0.97002 * 119.99644 * 273.66717 * 4 2 1 29 29 H 1.08000 * 119.87866 * 0.02562 * 9 8 5 30 30 H 1.07999 * 119.74809 * 179.70495 * 10 9 8 31 31 H 1.07994 * 119.87569 * 180.30865 * 11 10 9 32 32 H 1.07995 * 120.12693 * 179.75128 * 12 11 10 33 33 H 0.96999 * 120.00351 * 179.97438 * 17 16 14 34 34 H 1.08996 * 115.54935 * 154.33294 * 22 2 1 35 35 H 1.09003 * 117.49586 * 0.02562 * 23 22 2 36 36 H 1.09000 * 117.49396 * 145.01998 * 23 22 2 37 37 H 1.09003 * 117.50234 * 252.51342 * 24 23 22 38 38 H 1.09004 * 117.52149 * 107.48105 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 16 2.3811 0.1738 -2.5613 6 8 1.2610 1.0103 -2.8159 7 8 2.8838 -0.7607 -3.5062 8 6 3.7210 1.2452 -2.1596 9 6 3.5464 2.6101 -2.1874 10 6 4.6006 3.4554 -1.8779 11 6 5.8379 2.9376 -1.5262 12 6 6.0352 1.5763 -1.4917 13 6 4.9737 0.7087 -1.8097 14 6 5.1646 -0.6920 -1.7773 15 1 4.3349 -1.3450 -1.5506 16 6 6.4289 -1.2320 -2.0392 17 7 7.3657 -0.4818 -2.5598 18 14 6.7787 -3.0242 -1.6452 19 1 5.5627 -3.6506 -1.0673 20 1 7.1607 -3.7391 -2.8894 21 1 7.8913 -3.1075 -0.6650 22 6 2.0400 -0.7213 1.2492 23 6 1.0104 -1.4541 2.1117 24 6 1.6357 -0.1496 2.6096 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.1294 -1.6541 -1.1885 29 1 2.5858 3.0243 -2.4557 30 1 4.4560 4.5252 -1.9069 31 1 6.6508 3.6054 -1.2821 32 1 7.0008 1.1752 -1.2214 33 1 8.2421 -0.8560 -2.7410 34 1 3.0324 -1.1640 1.1643 35 1 -0.0303 -1.4227 1.7888 36 1 1.3253 -2.3794 2.5941 37 1 2.3620 -0.2165 3.4197 38 1 1.0067 0.7407 2.6146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601426088.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:55 Heat of formation + Delta-G solvation = -39.853076 kcal Electronic energy + Delta-G solvation = -22528.368543 eV Core-core repulsion = 19269.948148 eV Total energy + Delta-G solvation = -3258.420395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.35190 -37.57942 -36.17209 -34.79960 -34.05174 -33.79773 -30.24026 -29.57875 -28.92644 -25.53989 -24.25868 -22.28674 -21.65249 -21.15415 -19.63031 -18.57323 -17.69022 -16.85508 -16.47306 -15.88290 -15.39603 -14.84726 -14.41313 -14.26358 -14.11367 -13.32203 -13.28045 -13.03196 -12.75765 -12.09755 -11.97380 -11.78546 -11.54704 -11.44378 -11.28476 -11.21272 -11.16767 -11.04007 -10.98345 -10.73235 -10.62816 -10.49095 -10.17245 -9.96037 -9.88512 -9.45354 -9.40387 -8.76453 -8.03090 -7.60329 -7.04261 -4.75687 1.56646 2.34128 2.71696 2.96323 3.01799 3.09677 3.76601 3.80845 4.06255 4.40418 4.70110 4.88621 5.03265 5.12597 5.25523 5.32851 5.47692 5.55707 5.67854 5.74891 5.92421 5.93049 6.04808 6.06742 6.19997 6.23668 6.33158 6.41189 6.50948 6.60717 6.79248 6.94350 7.08686 7.31078 7.49067 7.58115 7.68854 7.80480 7.89519 8.28542 8.50338 8.64760 9.90060 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.007886 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.707738 B = 3549.854527 C = 4308.342479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.189 3.811 3 H 0.088 0.912 4 N -1.115 6.115 5 S 2.700 3.300 6 O -0.997 6.997 7 O -0.966 6.966 8 C -0.775 4.775 9 C -0.004 4.004 10 C -0.250 4.250 11 C -0.076 4.076 12 C -0.158 4.158 13 C 0.189 3.811 14 C -0.448 4.448 15 H 0.088 0.912 16 C 0.081 3.919 17 N -0.776 5.776 18 Si 0.914 3.086 19 H -0.255 1.255 20 H -0.269 1.269 21 H -0.270 1.270 22 C -0.155 4.155 23 C -0.187 4.187 24 C -0.176 4.176 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.411 0.589 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.287 0.713 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.216 -1.717 8.197 10.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.081 3.919 3 H 0.106 0.894 4 N -0.870 5.870 5 S 2.797 3.203 6 O -0.988 6.988 7 O -0.957 6.957 8 C -0.870 4.870 9 C -0.024 4.024 10 C -0.270 4.270 11 C -0.095 4.095 12 C -0.178 4.178 13 C 0.184 3.816 14 C -0.476 4.476 15 H 0.106 0.894 16 C -0.140 4.140 17 N -0.399 5.399 18 Si 0.738 3.262 19 H -0.178 1.178 20 H -0.193 1.193 21 H -0.195 1.195 22 C -0.174 4.174 23 C -0.224 4.224 24 C -0.214 4.214 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.244 0.756 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.140 0.860 33 H 0.098 0.902 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.464 -1.633 7.268 9.863 hybrid contribution 1.075 -0.745 0.568 1.426 sum -5.390 -2.379 7.837 9.804 Atomic orbital electron populations 1.22470 0.95877 1.02293 1.02691 1.20020 0.93099 0.95656 0.83119 0.89440 1.55749 1.82753 1.19179 1.29315 1.01127 0.73515 0.73310 0.72344 1.93444 1.51951 1.69260 1.84113 1.93539 1.81050 1.62640 1.58421 1.29888 1.16240 1.07253 1.33608 1.20266 0.97358 0.91902 0.92845 1.20488 0.94685 0.97366 1.14501 1.20892 0.95661 0.95476 0.97479 1.21452 0.99957 0.91998 1.04355 1.16987 0.88893 0.92907 0.82782 1.19873 0.96080 0.91756 1.39875 0.89375 1.25943 0.95214 1.01143 0.91738 1.69792 1.04373 1.38321 1.27397 0.86139 0.79682 0.81091 0.79317 1.17796 1.19348 1.19500 1.22658 1.00109 1.03610 0.91033 1.23152 0.99105 0.95873 1.04241 1.22922 1.03763 0.97461 0.97219 0.90971 0.92047 0.92034 0.75577 0.87418 0.88748 0.88845 0.86048 0.90197 0.86602 0.88122 0.89246 0.88897 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 8.11 37.16 0.30 -2.01 16 2 C 0.19 2.88 3.17 -67.93 -0.22 2.66 16 3 H 0.09 1.43 7.78 -51.93 -0.40 1.02 16 4 N -1.11 -19.39 4.54 -4.89 -0.02 -19.41 16 5 S 2.70 58.85 4.88 -107.50 -0.52 58.33 16 6 O -1.00 -22.40 16.12 -57.18 -0.92 -23.32 16 7 O -0.97 -24.13 16.64 -57.18 -0.95 -25.08 16 8 C -0.77 -18.42 5.69 -38.88 -0.22 -18.64 16 9 C 0.00 -0.09 9.53 -39.66 -0.38 -0.47 16 10 C -0.25 -5.45 10.05 -39.29 -0.39 -5.85 16 11 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 12 C -0.16 -3.88 8.66 -38.87 -0.34 -4.22 16 13 C 0.19 4.77 5.53 -106.83 -0.59 4.18 16 14 C -0.45 -11.08 7.63 -37.74 -0.29 -11.37 16 15 H 0.09 2.03 5.77 -52.49 -0.30 1.73 16 16 C 0.08 1.93 5.20 -17.34 -0.09 1.84 16 17 N -0.78 -19.07 11.00 55.55 0.61 -18.46 16 18 Si 0.91 17.87 29.58 -169.99 -5.03 12.84 16 19 H -0.25 -4.82 7.11 56.52 0.40 -4.42 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 22 C -0.15 -2.07 5.93 -90.62 -0.54 -2.61 16 23 C -0.19 -2.04 9.57 -26.73 -0.26 -2.30 16 24 C -0.18 -1.99 9.90 -26.73 -0.26 -2.25 16 25 H 0.07 1.08 7.50 -51.93 -0.39 0.69 16 26 H 0.06 0.73 6.98 -51.93 -0.36 0.37 16 27 H 0.06 0.68 7.07 -51.93 -0.37 0.32 16 28 H 0.41 6.45 8.59 -34.47 -0.30 6.15 16 29 H 0.11 2.25 7.33 -52.49 -0.38 1.87 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 32 H 0.12 3.01 6.35 -52.49 -0.33 2.67 16 33 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 34 H 0.12 1.68 8.14 -51.93 -0.42 1.26 16 35 H 0.10 1.02 5.85 -51.93 -0.30 0.72 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 0.99 7.61 -51.93 -0.40 0.60 16 LS Contribution 322.74 15.07 4.86 4.86 Total: -1.00 -29.73 322.74 -10.43 -40.16 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -4.79 Total: 13.23 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: -3.67 Total: -43.14 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.59 Total: -37.87 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -1.87 Total: -48.41 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 16 Polarization: 58.85 SS G_CDS: -0.52 Total: 58.33 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.73 -10.43 -40.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601426088.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.305 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds