Wall clock time and date at job start Tue Mar 31 2020 07:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08999 * 109.46599 * 2 1 4 4 N 1.46496 * 109.47074 * 240.00304 * 2 1 3 5 5 S 1.65597 * 120.00535 * 93.67356 * 4 2 1 6 6 O 1.42099 * 106.40005 * 310.10190 * 5 4 2 7 7 O 1.42091 * 106.40338 * 177.18264 * 5 4 2 8 8 C 1.76202 * 107.21566 * 63.63898 * 5 4 2 9 9 C 1.37634 * 120.12671 * 244.32296 * 8 5 4 10 10 C 1.38620 * 120.24584 * 180.30170 * 9 8 5 11 11 C 1.38655 * 120.50037 * 359.44758 * 10 9 8 12 12 C 1.37600 * 120.24784 * 0.55083 * 11 10 9 13 13 C 1.40692 * 120.12585 * 64.35189 * 8 5 4 14 14 C 1.41396 * 120.24600 * 359.94896 * 13 8 5 15 15 H 1.08001 * 120.00238 * 330.81211 * 14 13 8 16 16 C 1.39949 * 119.99824 * 150.80520 * 14 13 8 17 17 N 1.30822 * 120.00381 * 346.90346 * 16 14 13 18 18 Si 1.86802 * 119.99638 * 166.90106 * 16 14 13 19 19 H 1.48498 * 109.47444 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47313 * 120.00376 * 18 16 14 21 21 H 1.48508 * 109.46970 * 240.00189 * 18 16 14 22 22 C 1.52998 * 109.46904 * 120.00056 * 2 1 3 23 23 C 1.53007 * 117.49993 * 8.62002 * 22 2 1 24 24 C 1.52995 * 60.00103 * 252.51210 * 23 22 2 25 25 H 1.09005 * 109.46661 * 60.00218 * 1 2 3 26 26 H 1.08996 * 109.46741 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47240 * 299.99794 * 1 2 3 28 28 H 0.97002 * 119.99644 * 273.66717 * 4 2 1 29 29 H 1.08000 * 119.87866 * 0.02562 * 9 8 5 30 30 H 1.07999 * 119.74809 * 179.70495 * 10 9 8 31 31 H 1.07994 * 119.87569 * 180.30865 * 11 10 9 32 32 H 1.07995 * 120.12693 * 179.75128 * 12 11 10 33 33 H 0.96999 * 120.00351 * 179.97438 * 17 16 14 34 34 H 1.08996 * 115.54935 * 154.33294 * 22 2 1 35 35 H 1.09003 * 117.49586 * 0.02562 * 23 22 2 36 36 H 1.09000 * 117.49396 * 145.01998 * 23 22 2 37 37 H 1.09003 * 117.50234 * 252.51342 * 24 23 22 38 38 H 1.09004 * 117.52149 * 107.48105 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 16 2.3811 0.1738 -2.5613 6 8 1.2610 1.0103 -2.8159 7 8 2.8838 -0.7607 -3.5062 8 6 3.7210 1.2452 -2.1596 9 6 3.5464 2.6101 -2.1874 10 6 4.6006 3.4554 -1.8779 11 6 5.8379 2.9376 -1.5262 12 6 6.0352 1.5763 -1.4917 13 6 4.9737 0.7087 -1.8097 14 6 5.1646 -0.6920 -1.7773 15 1 4.3349 -1.3450 -1.5506 16 6 6.4289 -1.2320 -2.0392 17 7 7.3657 -0.4818 -2.5598 18 14 6.7787 -3.0242 -1.6452 19 1 5.5627 -3.6506 -1.0673 20 1 7.1607 -3.7391 -2.8894 21 1 7.8913 -3.1075 -0.6650 22 6 2.0400 -0.7213 1.2492 23 6 1.0104 -1.4541 2.1117 24 6 1.6357 -0.1496 2.6096 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.1294 -1.6541 -1.1885 29 1 2.5858 3.0243 -2.4557 30 1 4.4560 4.5252 -1.9069 31 1 6.6508 3.6054 -1.2821 32 1 7.0008 1.1752 -1.2214 33 1 8.2421 -0.8560 -2.7410 34 1 3.0324 -1.1640 1.1643 35 1 -0.0303 -1.4227 1.7888 36 1 1.3253 -2.3794 2.5941 37 1 2.3620 -0.2165 3.4197 38 1 1.0067 0.7407 2.6146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601426088.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:55 Heat of formation + Delta-G solvation = -58.275274 kcal Electronic energy + Delta-G solvation = -22529.167389 eV Core-core repulsion = 19269.948148 eV Total energy + Delta-G solvation = -3259.219241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.47793 -39.30716 -37.98101 -36.64109 -35.69655 -35.17882 -32.03307 -31.37426 -30.13979 -27.34894 -25.36010 -23.45178 -23.14819 -22.95247 -20.78905 -20.21709 -19.48972 -18.48774 -17.90638 -17.43707 -17.07850 -16.30748 -16.03415 -15.57157 -15.35488 -15.04664 -14.96952 -14.48204 -14.37821 -13.71416 -13.31998 -13.26208 -12.98872 -12.90164 -12.88735 -12.81723 -12.79588 -12.70697 -12.49438 -12.15901 -12.11089 -11.78463 -11.64089 -11.31124 -11.18914 -11.07789 -10.88191 -10.19582 -9.83440 -9.43166 -8.80689 -6.60700 -0.13786 0.53469 0.96530 1.35759 1.48664 1.51262 2.15005 2.33718 2.62796 2.98520 3.03601 3.47801 3.78705 3.90660 4.00630 4.18777 4.25341 4.31986 4.34805 4.49590 4.53865 4.72053 4.80148 4.87291 4.97716 5.00753 5.07631 5.13801 5.25286 5.31787 5.36742 5.40231 5.50498 5.52437 5.70826 5.81814 5.99912 6.08683 6.27730 6.47529 6.68065 6.83462 8.16944 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.007886 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.707738 B = 3549.854527 C = 4308.342479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.183 3.817 3 H 0.071 0.929 4 N -1.103 6.103 5 S 2.719 3.281 6 O -1.006 7.006 7 O -1.003 7.003 8 C -0.792 4.792 9 C -0.017 4.017 10 C -0.250 4.250 11 C -0.075 4.075 12 C -0.186 4.186 13 C 0.165 3.835 14 C -0.475 4.475 15 H 0.095 0.905 16 C 0.038 3.962 17 N -0.809 5.809 18 Si 0.975 3.025 19 H -0.246 1.246 20 H -0.270 1.270 21 H -0.255 1.255 22 C -0.179 4.179 23 C -0.168 4.168 24 C -0.169 4.169 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.419 0.581 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.295 0.705 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.217 -2.086 9.797 12.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.076 3.924 3 H 0.089 0.911 4 N -0.862 5.862 5 S 2.815 3.185 6 O -0.996 6.996 7 O -0.993 6.993 8 C -0.886 4.886 9 C -0.037 4.037 10 C -0.270 4.270 11 C -0.094 4.094 12 C -0.206 4.206 13 C 0.160 3.840 14 C -0.503 4.503 15 H 0.113 0.887 16 C -0.180 4.180 17 N -0.433 5.433 18 Si 0.794 3.206 19 H -0.168 1.168 20 H -0.195 1.195 21 H -0.180 1.180 22 C -0.199 4.199 23 C -0.205 4.205 24 C -0.207 4.207 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.255 0.745 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.460 -1.978 8.875 11.762 hybrid contribution 1.334 -0.514 0.093 1.432 sum -6.126 -2.492 8.969 11.143 Atomic orbital electron populations 1.22450 0.94018 1.03478 1.03023 1.20224 0.94522 0.94843 0.82834 0.91129 1.55382 1.82407 1.19383 1.29072 1.00414 0.72792 0.72734 0.72577 1.93424 1.51795 1.69687 1.84705 1.93482 1.81632 1.63507 1.60681 1.30196 1.16716 1.08347 1.33294 1.20594 0.98448 0.91806 0.92844 1.20893 0.94014 0.99050 1.13086 1.21240 0.96860 0.95079 0.96219 1.21517 0.99728 0.93198 1.06140 1.17298 0.89664 0.93623 0.83383 1.20161 0.97097 0.92027 1.41035 0.88745 1.26819 0.94725 1.05271 0.91139 1.69831 1.05033 1.40223 1.28237 0.85247 0.80168 0.75881 0.79253 1.16847 1.19453 1.17958 1.22491 1.00308 1.05759 0.91298 1.23251 0.98937 0.96102 1.02183 1.23046 1.03767 0.98235 0.95607 0.92868 0.90423 0.89461 0.74524 0.85974 0.85463 0.85981 0.87112 0.89433 0.88314 0.86811 0.88143 0.88191 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 8.11 71.99 0.58 -3.61 16 2 C 0.18 5.41 3.17 44.99 0.14 5.55 16 3 H 0.07 2.31 7.78 -2.39 -0.02 2.29 16 4 N -1.10 -38.29 4.54 -169.38 -0.77 -39.06 16 5 S 2.72 119.97 4.88 -56.49 -0.28 119.70 16 6 O -1.01 -45.22 16.12 -128.00 -2.06 -47.28 16 7 O -1.00 -51.17 16.64 -128.00 -2.13 -53.30 16 8 C -0.79 -38.22 5.69 22.73 0.13 -38.09 16 9 C -0.02 -0.78 9.53 22.22 0.21 -0.56 16 10 C -0.25 -10.59 10.05 22.46 0.23 -10.37 16 11 C -0.08 -3.32 10.02 22.22 0.22 -3.10 16 12 C -0.19 -9.33 8.66 22.73 0.20 -9.13 16 13 C 0.16 8.52 5.53 -21.29 -0.12 8.40 16 14 C -0.48 -24.09 7.63 23.46 0.18 -23.91 16 15 H 0.09 4.46 5.77 -2.91 -0.02 4.44 16 16 C 0.04 1.86 5.20 85.26 0.44 2.30 16 17 N -0.81 -40.73 11.00 21.83 0.24 -40.49 16 18 Si 0.98 36.55 29.58 68.60 2.03 38.58 16 19 H -0.25 -8.72 7.11 99.48 0.71 -8.02 16 20 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 21 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 22 C -0.18 -4.56 5.93 -10.79 -0.06 -4.63 16 23 C -0.17 -3.17 9.57 30.59 0.29 -2.88 16 24 C -0.17 -3.40 9.90 30.59 0.30 -3.10 16 25 H 0.05 1.51 7.50 -2.38 -0.02 1.50 16 26 H 0.08 1.64 6.98 -2.39 -0.02 1.62 16 27 H 0.09 1.68 7.07 -2.39 -0.02 1.66 16 28 H 0.42 13.09 8.59 -96.75 -0.83 12.26 16 29 H 0.12 5.02 7.33 -2.91 -0.02 5.00 16 30 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 32 H 0.11 5.68 6.35 -2.91 -0.02 5.66 16 33 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 34 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.11 1.86 5.85 -2.39 -0.01 1.85 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.10 1.89 7.61 -2.39 -0.02 1.88 16 Total: -1.00 -64.56 322.74 0.04 -64.53 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: 0.26 Total: 40.45 kcal Atomic # 6 Polarization: -85.87 SS G_CDS: 2.75 Total: -83.12 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -0.53 Total: -79.55 kcal Atomic # 8 Polarization: -96.39 SS G_CDS: -4.19 Total: -100.58 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Atomic # 16 Polarization: 119.97 SS G_CDS: -0.28 Total: 119.70 kcal Total: -64.56 0.04 -64.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601426088.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.251 kcal (2) G-P(sol) polarization free energy of solvation -64.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds