Wall clock time and date at job start Tue Mar 31 2020 06:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47024 * 2 1 4 4 C 1.31007 * 119.99968 * 127.85180 * 3 2 1 5 5 C 1.50697 * 119.99852 * 7.09769 * 4 3 2 6 6 N 1.46499 * 109.47427 * 128.47402 * 5 4 3 7 7 S 1.65604 * 120.00214 * 165.19877 * 6 5 4 8 8 O 1.42102 * 106.40022 * 176.58959 * 7 6 5 9 9 O 1.42093 * 106.40195 * 309.51027 * 7 6 5 10 10 C 1.76193 * 107.21465 * 63.05298 * 7 6 5 11 11 C 1.37646 * 120.12631 * 245.87969 * 10 7 6 12 12 C 1.38611 * 120.24677 * 179.97438 * 11 10 7 13 13 C 1.38651 * 120.50538 * 0.02562 * 12 11 10 14 14 C 1.37598 * 120.24918 * 0.02562 * 13 12 11 15 15 C 1.40698 * 120.13318 * 65.61307 * 10 7 6 16 16 C 1.41392 * 120.23964 * 359.97438 * 15 10 7 17 17 H 1.08003 * 120.00442 * 320.63350 * 16 15 10 18 18 C 1.39947 * 120.00079 * 140.63317 * 16 15 10 19 19 N 1.30825 * 119.99837 * 351.01882 * 18 16 15 20 20 Si 1.86796 * 120.00300 * 171.02382 * 18 16 15 21 21 H 1.48501 * 109.46996 * 60.00124 * 20 18 16 22 22 H 1.48499 * 109.47214 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47509 * 299.99962 * 20 18 16 24 24 H 1.08999 * 109.46807 * 299.99165 * 1 2 3 25 25 H 1.08996 * 109.46967 * 59.99939 * 1 2 3 26 26 H 1.08999 * 109.46816 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47174 * 239.99952 * 2 1 3 28 28 H 1.09000 * 109.47393 * 120.00320 * 2 1 3 29 29 H 1.07998 * 120.00270 * 308.12761 * 3 2 1 30 30 H 1.07991 * 119.99989 * 187.09616 * 4 3 2 31 31 H 1.09002 * 109.47624 * 248.47582 * 5 4 3 32 32 H 1.09001 * 109.47572 * 8.47144 * 5 4 3 33 33 H 0.97003 * 119.99627 * 345.20254 * 6 5 4 34 34 H 1.08004 * 119.87365 * 0.02562 * 11 10 7 35 35 H 1.08002 * 119.74597 * 180.02562 * 12 11 10 36 36 H 1.07997 * 119.87890 * 180.02562 * 13 12 11 37 37 H 1.07996 * 120.13175 * 179.97438 * 14 13 12 38 38 H 0.96994 * 120.00244 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9070 1.8064 0.8958 5 6 3.5309 0.7957 1.8234 6 7 4.9890 0.9332 1.7860 7 16 5.9182 0.2208 2.9571 8 8 7.2715 0.4665 2.6000 9 8 5.3604 0.6109 4.2044 10 6 5.6773 -1.5197 2.8268 11 6 5.0585 -2.2096 3.8444 12 6 4.8672 -3.5788 3.7443 13 6 5.2962 -4.2691 2.6210 14 6 5.9182 -3.6002 1.5919 15 6 6.1118 -2.2089 1.6797 16 6 6.7432 -1.5098 0.6253 17 1 6.3865 -0.5324 0.3356 18 6 7.8304 -2.0842 -0.0429 19 7 8.3742 -3.1821 0.4158 20 14 8.5053 -1.2833 -1.5896 21 1 8.9646 0.0931 -1.2742 22 1 9.6484 -2.0810 -2.1017 23 1 7.4397 -1.2251 -2.6223 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6679 2.1225 -0.7357 30 1 3.1810 2.8483 0.9696 31 1 3.1758 0.9673 2.8396 32 1 3.2525 -0.2092 1.5062 33 1 5.4100 1.4416 1.0753 34 1 4.7199 -1.6819 4.7239 35 1 4.3803 -4.1120 4.5475 36 1 5.1417 -5.3358 2.5534 37 1 6.2520 -4.1398 0.7180 38 1 9.1280 -3.5801 -0.0470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601427953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:19 Heat of formation + Delta-G solvation = -68.871115 kcal Electronic energy + Delta-G solvation = -22056.435252 eV Core-core repulsion = 18796.756540 eV Total energy + Delta-G solvation = -3259.678711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.39934 -38.21378 -37.89215 -36.66155 -35.58965 -34.98738 -32.01595 -31.44432 -31.23905 -27.32162 -26.39858 -24.09420 -23.45276 -22.95463 -20.37411 -19.63683 -19.45135 -18.40386 -17.72346 -17.40393 -17.01566 -16.31559 -16.05040 -15.68430 -15.16276 -14.94707 -14.91991 -14.76149 -14.42336 -13.99937 -13.64262 -13.35568 -13.25542 -12.98177 -12.95224 -12.86139 -12.84011 -12.78836 -12.53798 -12.35324 -12.17978 -11.82738 -11.62714 -11.55513 -11.21912 -11.06186 -10.37264 -9.85825 -9.79338 -9.34930 -8.74210 -6.59566 -0.18890 0.50316 0.96249 1.28427 1.36755 1.47603 1.50952 2.18769 2.43595 2.68724 2.98308 3.43110 3.75232 3.93696 4.13390 4.27377 4.31227 4.43961 4.48375 4.50270 4.62489 4.69312 4.80004 4.86856 4.97809 5.10792 5.12832 5.18620 5.28556 5.30378 5.41201 5.51554 5.67962 5.74780 5.81591 5.92087 5.95955 6.09171 6.26306 6.45720 6.74377 6.81224 8.26548 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.006907 C = 0.006224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.051796 B = 4052.802513 C = 4497.745211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C -0.128 4.128 4 C -0.178 4.178 5 C 0.136 3.864 6 N -1.106 6.106 7 S 2.719 3.281 8 O -0.997 6.997 9 O -1.009 7.009 10 C -0.780 4.780 11 C -0.021 4.021 12 C -0.239 4.239 13 C -0.074 4.074 14 C -0.177 4.177 15 C 0.173 3.827 16 C -0.493 4.493 17 H 0.094 0.906 18 C 0.042 3.958 19 N -0.824 5.824 20 Si 0.971 3.029 21 H -0.262 1.262 22 H -0.266 1.266 23 H -0.245 1.245 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.420 0.580 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.237 4.968 -3.954 12.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C -0.147 4.147 4 C -0.198 4.198 5 C 0.012 3.988 6 N -0.867 5.867 7 S 2.815 3.185 8 O -0.987 6.987 9 O -1.000 7.000 10 C -0.874 4.874 11 C -0.041 4.041 12 C -0.259 4.259 13 C -0.092 4.092 14 C -0.197 4.197 15 C 0.169 3.831 16 C -0.522 4.522 17 H 0.112 0.888 18 C -0.174 4.174 19 N -0.449 5.449 20 Si 0.791 3.209 21 H -0.187 1.187 22 H -0.190 1.190 23 H -0.169 1.169 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.256 0.744 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.120 0.880 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.598 5.160 -3.220 12.219 hybrid contribution 0.653 -0.459 -0.979 1.263 sum -9.946 4.701 -4.199 11.775 Atomic orbital electron populations 1.21657 0.93591 1.02116 1.02413 1.20954 0.97400 0.94834 1.02736 1.23079 0.97021 0.97617 0.97006 1.22790 0.99641 0.99410 0.97926 1.20531 0.78144 0.99594 1.00574 1.55273 1.16161 1.68940 1.46294 1.00372 0.72028 0.73930 0.72129 1.93495 1.35309 1.86020 1.83867 1.93422 1.80146 1.83151 1.43239 1.30351 1.28356 1.24016 1.04676 1.20655 0.92739 0.95253 0.95439 1.20960 1.10359 0.94119 1.00445 1.21277 0.95251 0.99295 0.93385 1.21417 1.03200 0.95338 0.99770 1.17293 0.84216 0.92682 0.88893 1.19977 1.12860 1.04355 1.15057 0.88770 1.26674 0.95778 0.94493 1.00482 1.69797 1.19200 1.18248 1.37654 0.85407 0.78934 0.79339 0.77258 1.18687 1.19020 1.16861 0.92441 0.91591 0.92322 0.91166 0.91613 0.84720 0.85204 0.90422 0.90966 0.74406 0.85720 0.85039 0.85616 0.87957 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.89 71.98 0.71 -1.68 16 2 C -0.12 -2.64 6.01 29.85 0.18 -2.46 16 3 C -0.13 -2.61 9.51 25.64 0.24 -2.37 16 4 C -0.18 -4.13 9.65 25.64 0.25 -3.88 16 5 C 0.14 4.06 6.25 85.63 0.54 4.60 16 6 N -1.11 -38.48 5.10 -190.79 -0.97 -39.46 16 7 S 2.72 120.17 5.00 -56.49 -0.28 119.89 16 8 O -1.00 -51.09 16.71 -128.00 -2.14 -53.23 16 9 O -1.01 -45.79 16.51 -128.00 -2.11 -47.90 16 10 C -0.78 -37.28 5.90 22.73 0.13 -37.15 16 11 C -0.02 -0.93 9.54 22.22 0.21 -0.72 16 12 C -0.24 -9.77 10.05 22.46 0.23 -9.54 16 13 C -0.07 -3.14 10.02 22.22 0.22 -2.92 16 14 C -0.18 -8.75 8.62 22.73 0.20 -8.55 16 15 C 0.17 8.90 5.41 -21.29 -0.12 8.79 16 16 C -0.49 -25.22 7.25 23.46 0.17 -25.05 16 17 H 0.09 4.46 6.43 -2.91 -0.02 4.44 16 18 C 0.04 2.09 5.24 85.26 0.45 2.53 16 19 N -0.82 -42.63 11.50 21.83 0.25 -42.38 16 20 Si 0.97 37.74 29.57 68.60 2.03 39.77 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 23 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.62 5.33 -2.39 -0.01 1.61 16 29 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 30 H 0.13 2.59 8.06 -2.92 -0.02 2.56 16 31 H 0.08 2.29 7.80 -2.39 -0.02 2.27 16 32 H 0.07 2.23 5.34 -2.39 -0.01 2.22 16 33 H 0.42 13.10 8.53 -96.74 -0.82 12.27 16 34 H 0.12 5.00 7.32 -2.91 -0.02 4.98 16 35 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 37 H 0.10 5.18 6.98 -2.91 -0.02 5.16 16 38 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 Total: -1.00 -65.21 329.90 0.43 -64.78 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: 0.25 Total: 36.93 kcal Atomic # 6 Polarization: -81.81 SS G_CDS: 3.41 Total: -78.40 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -0.72 Total: -81.83 kcal Atomic # 8 Polarization: -96.88 SS G_CDS: -4.25 Total: -101.14 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Atomic # 16 Polarization: 120.17 SS G_CDS: -0.28 Total: 119.89 kcal Total: -65.21 0.43 -64.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601427953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.091 kcal (2) G-P(sol) polarization free energy of solvation -65.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds