Wall clock time and date at job start Tue Mar 31 2020 06:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50698 * 109.47093 * 2 1 4 4 C 1.31004 * 120.00515 * 124.99968 * 3 2 1 5 5 C 1.50702 * 120.00188 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.46878 * 125.00155 * 5 4 3 7 7 S 1.65598 * 119.99852 * 161.94254 * 6 5 4 8 8 O 1.42092 * 106.40314 * 311.14000 * 7 6 5 9 9 O 1.42098 * 106.40310 * 178.22181 * 7 6 5 10 10 C 1.76203 * 107.21947 * 64.68325 * 7 6 5 11 11 C 1.37643 * 120.12809 * 113.23564 * 10 7 6 12 12 C 1.38609 * 120.24327 * 180.32188 * 11 10 7 13 13 C 1.38653 * 120.50515 * 359.67497 * 12 11 10 14 14 C 1.37599 * 120.24794 * 0.02562 * 13 12 11 15 15 C 1.40692 * 120.12692 * 292.93881 * 10 7 6 16 16 C 1.41400 * 120.24378 * 359.97438 * 15 10 7 17 17 H 1.08002 * 119.99965 * 317.05430 * 16 15 10 18 18 C 1.39949 * 120.00099 * 137.05995 * 16 15 10 19 19 N 1.30820 * 119.99819 * 154.87598 * 18 16 15 20 20 Si 1.86794 * 119.99763 * 334.87865 * 18 16 15 21 21 H 1.48497 * 109.47192 * 268.43647 * 20 18 16 22 22 H 1.48505 * 109.47347 * 28.43860 * 20 18 16 23 23 H 1.48501 * 109.47054 * 148.43893 * 20 18 16 24 24 H 1.08999 * 109.47268 * 60.00340 * 1 2 3 25 25 H 1.09003 * 109.47180 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47142 * 299.99850 * 1 2 3 27 27 H 1.08999 * 109.47278 * 239.99700 * 2 1 3 28 28 H 1.08999 * 109.47268 * 119.99660 * 2 1 3 29 29 H 1.08004 * 120.00029 * 304.99546 * 3 2 1 30 30 H 1.07994 * 119.99393 * 359.97438 * 4 3 2 31 31 H 1.08997 * 109.47017 * 5.00098 * 5 4 3 32 32 H 1.08999 * 109.46617 * 245.00139 * 5 4 3 33 33 H 0.97002 * 119.99699 * 341.94004 * 6 5 4 34 34 H 1.07998 * 119.87855 * 0.02562 * 11 10 7 35 35 H 1.08000 * 119.74885 * 179.70062 * 12 11 10 36 36 H 1.08005 * 119.87735 * 180.02562 * 13 12 11 37 37 H 1.08001 * 120.12661 * 180.02562 * 14 13 12 38 38 H 0.96998 * 120.00073 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8641 1.8216 0.9293 5 6 3.3669 3.2422 0.9289 6 7 3.0843 3.8606 2.2266 7 16 3.8938 5.2306 2.6848 8 8 5.2730 4.9773 2.4555 9 8 3.3719 5.5996 3.9539 10 6 3.4299 6.5096 1.5651 11 6 2.6946 7.5846 2.0105 12 6 2.3226 8.5888 1.1304 13 6 2.6914 8.5266 -0.2048 14 6 3.4316 7.4645 -0.6707 15 6 3.8149 6.4392 0.2138 16 6 4.5762 5.3430 -0.2536 17 1 5.4019 4.9694 0.3338 18 6 4.2598 4.7424 -1.4774 19 7 5.1812 4.1007 -2.1487 20 14 2.5218 4.8571 -2.1523 21 1 1.7344 3.6844 -1.6940 22 1 1.8820 6.1047 -1.6630 23 1 2.5672 4.8733 -3.6365 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7065 2.1087 -0.7662 30 1 3.1896 1.1338 1.6957 31 1 2.8654 3.8048 0.1414 32 1 4.4421 3.2470 0.7506 33 1 2.4229 3.4674 2.8174 34 1 2.4022 7.6435 3.0485 35 1 1.7416 9.4262 1.4874 36 1 2.3964 9.3149 -0.8816 37 1 3.7181 7.4183 -1.7110 38 1 4.9618 3.6841 -2.9967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601427954.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:22 Heat of formation + Delta-G solvation = -46.839148 kcal Electronic energy + Delta-G solvation = -22404.901677 eV Core-core repulsion = 19146.178343 eV Total energy + Delta-G solvation = -3258.723334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -37.94687 -36.64494 -36.17025 -34.89737 -34.28584 -33.60374 -30.72671 -30.27230 -30.08024 -25.77870 -24.99646 -22.15542 -21.84407 -21.17491 -19.53865 -18.50380 -17.80630 -17.04362 -16.33626 -15.78430 -15.24393 -14.68616 -14.50997 -14.24373 -14.07400 -13.56278 -13.30486 -13.26866 -13.06189 -12.66712 -12.31750 -12.06014 -11.93974 -11.74584 -11.54306 -11.31014 -11.18011 -11.17111 -11.10086 -10.83431 -10.68649 -10.27634 -10.22967 -10.08604 -9.48820 -9.35200 -9.02901 -8.50216 -8.22080 -7.68879 -7.19615 -4.82971 1.46024 2.05829 2.47660 2.49635 2.87399 2.94661 3.07294 3.75761 4.03190 4.20620 4.63006 4.93193 5.02265 5.12083 5.36394 5.44564 5.50368 5.61477 5.81463 5.83287 5.92141 5.93990 6.01907 6.16067 6.18293 6.33302 6.34457 6.46350 6.64127 6.72794 6.94327 6.97500 7.07033 7.11393 7.22547 7.43782 7.57046 7.69769 7.82141 8.20835 8.32998 8.54005 9.78302 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.007848 C = 0.006247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.395342 B = 3566.942630 C = 4481.304753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.165 4.165 4 C -0.159 4.159 5 C 0.152 3.848 6 N -1.117 6.117 7 S 2.708 3.292 8 O -0.967 6.967 9 O -0.998 6.998 10 C -0.761 4.761 11 C 0.006 3.994 12 C -0.245 4.245 13 C -0.060 4.060 14 C -0.197 4.197 15 C 0.164 3.836 16 C -0.495 4.495 17 H 0.134 0.866 18 C 0.101 3.899 19 N -0.772 5.772 20 Si 0.852 3.148 21 H -0.252 1.252 22 H -0.223 1.223 23 H -0.274 1.274 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.406 0.594 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.673 -4.942 0.528 9.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.184 4.184 4 C -0.179 4.179 5 C 0.027 3.973 6 N -0.873 5.873 7 S 2.804 3.196 8 O -0.957 6.957 9 O -0.989 6.989 10 C -0.854 4.854 11 C -0.014 4.014 12 C -0.265 4.265 13 C -0.079 4.079 14 C -0.216 4.216 15 C 0.160 3.840 16 C -0.523 4.523 17 H 0.152 0.848 18 C -0.122 4.122 19 N -0.393 5.393 20 Si 0.675 3.325 21 H -0.178 1.178 22 H -0.145 1.145 23 H -0.200 1.200 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.238 0.762 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.778 -4.993 0.911 8.467 hybrid contribution -1.337 0.216 -1.018 1.695 sum -8.115 -4.777 -0.107 9.417 Atomic orbital electron populations 1.21713 0.95450 1.01209 1.02101 1.20625 0.95882 0.94544 1.02068 1.23117 0.98184 0.97284 0.99825 1.23178 0.97966 0.97586 0.99151 1.20949 1.02937 0.89544 0.83892 1.55491 1.58491 1.44897 1.28447 1.00877 0.73574 0.72844 0.72307 1.93506 1.31597 1.84649 1.85942 1.93459 1.81171 1.83614 1.40632 1.30150 1.23632 1.18965 1.12703 1.20402 0.91217 0.91821 0.97988 1.20575 1.10163 1.01580 0.94184 1.20903 0.95062 0.96710 0.95194 1.21369 1.05366 0.95633 0.99278 1.17119 0.86260 0.91495 0.89148 1.20225 1.14823 1.12956 1.04258 0.84843 1.26060 0.98797 0.93100 0.94279 1.69765 1.34078 1.23777 1.11710 0.87177 0.84047 0.82519 0.78740 1.17780 1.14513 1.19974 0.92721 0.92868 0.92584 0.91358 0.91726 0.86779 0.87317 0.90865 0.87630 0.76196 0.86797 0.88088 0.88281 0.87777 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 37.15 0.37 -1.18 16 2 C -0.09 -1.11 6.38 -27.89 -0.18 -1.29 16 3 C -0.16 -2.47 9.12 -36.03 -0.33 -2.79 16 4 C -0.16 -2.53 9.28 -36.03 -0.33 -2.87 16 5 C 0.15 2.89 4.48 -5.19 -0.02 2.87 16 6 N -1.12 -20.44 5.97 -11.66 -0.07 -20.51 16 7 S 2.71 58.19 5.44 -107.50 -0.58 57.60 16 8 O -0.97 -23.59 15.09 -57.18 -0.86 -24.45 16 9 O -1.00 -22.06 16.97 -57.18 -0.97 -23.03 16 10 C -0.76 -17.30 5.94 -38.87 -0.23 -17.53 16 11 C 0.01 0.12 9.54 -39.66 -0.38 -0.26 16 12 C -0.24 -4.91 10.05 -39.29 -0.39 -5.30 16 13 C -0.06 -1.22 10.02 -39.66 -0.40 -1.62 16 14 C -0.20 -4.42 6.79 -38.87 -0.26 -4.68 16 15 C 0.16 3.91 4.61 -106.83 -0.49 3.42 16 16 C -0.50 -12.13 5.13 -37.74 -0.19 -12.32 16 17 H 0.13 3.59 5.38 -52.49 -0.28 3.30 16 18 C 0.10 2.33 4.19 -17.34 -0.07 2.26 16 19 N -0.77 -18.25 13.93 55.55 0.77 -17.48 16 20 Si 0.85 17.19 24.43 -169.99 -4.15 13.04 16 21 H -0.25 -4.69 4.83 56.52 0.27 -4.42 16 22 H -0.22 -4.62 5.46 56.52 0.31 -4.32 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.70 7.79 -51.93 -0.40 0.30 16 29 H 0.11 1.86 5.69 -52.48 -0.30 1.56 16 30 H 0.11 1.52 7.84 -52.49 -0.41 1.11 16 31 H 0.07 1.47 3.04 -51.93 -0.16 1.31 16 32 H 0.11 2.26 5.91 -51.93 -0.31 1.95 16 33 H 0.41 6.16 8.67 -34.47 -0.30 5.86 16 34 H 0.11 2.22 7.32 -52.49 -0.38 1.83 16 35 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 36 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.10 2.25 6.93 -52.49 -0.36 1.89 16 38 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 LS Contribution 310.22 15.07 4.67 4.67 Total: -1.00 -28.06 310.22 -8.92 -36.97 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -4.80 Total: 14.46 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: -2.92 Total: -41.29 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.70 Total: -37.99 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -1.83 Total: -47.48 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -4.15 Total: 13.04 kcal Atomic # 16 Polarization: 58.19 SS G_CDS: -0.58 Total: 57.60 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.06 -8.92 -36.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601427954.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.866 kcal (2) G-P(sol) polarization free energy of solvation -28.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds