Wall clock time and date at job start Tue Mar 31 2020 06:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50698 * 109.47093 * 2 1 4 4 C 1.31004 * 120.00515 * 124.99968 * 3 2 1 5 5 C 1.50702 * 120.00188 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.46878 * 125.00155 * 5 4 3 7 7 S 1.65598 * 119.99852 * 161.94254 * 6 5 4 8 8 O 1.42092 * 106.40314 * 311.14000 * 7 6 5 9 9 O 1.42098 * 106.40310 * 178.22181 * 7 6 5 10 10 C 1.76203 * 107.21947 * 64.68325 * 7 6 5 11 11 C 1.37643 * 120.12809 * 113.23564 * 10 7 6 12 12 C 1.38609 * 120.24327 * 180.32188 * 11 10 7 13 13 C 1.38653 * 120.50515 * 359.67497 * 12 11 10 14 14 C 1.37599 * 120.24794 * 0.02562 * 13 12 11 15 15 C 1.40692 * 120.12692 * 292.93881 * 10 7 6 16 16 C 1.41400 * 120.24378 * 359.97438 * 15 10 7 17 17 H 1.08002 * 119.99965 * 317.05430 * 16 15 10 18 18 C 1.39949 * 120.00099 * 137.05995 * 16 15 10 19 19 N 1.30820 * 119.99819 * 154.87598 * 18 16 15 20 20 Si 1.86794 * 119.99763 * 334.87865 * 18 16 15 21 21 H 1.48497 * 109.47192 * 268.43647 * 20 18 16 22 22 H 1.48505 * 109.47347 * 28.43860 * 20 18 16 23 23 H 1.48501 * 109.47054 * 148.43893 * 20 18 16 24 24 H 1.08999 * 109.47268 * 60.00340 * 1 2 3 25 25 H 1.09003 * 109.47180 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47142 * 299.99850 * 1 2 3 27 27 H 1.08999 * 109.47278 * 239.99700 * 2 1 3 28 28 H 1.08999 * 109.47268 * 119.99660 * 2 1 3 29 29 H 1.08004 * 120.00029 * 304.99546 * 3 2 1 30 30 H 1.07994 * 119.99393 * 359.97438 * 4 3 2 31 31 H 1.08997 * 109.47017 * 5.00098 * 5 4 3 32 32 H 1.08999 * 109.46617 * 245.00139 * 5 4 3 33 33 H 0.97002 * 119.99699 * 341.94004 * 6 5 4 34 34 H 1.07998 * 119.87855 * 0.02562 * 11 10 7 35 35 H 1.08000 * 119.74885 * 179.70062 * 12 11 10 36 36 H 1.08005 * 119.87735 * 180.02562 * 13 12 11 37 37 H 1.08001 * 120.12661 * 180.02562 * 14 13 12 38 38 H 0.96998 * 120.00073 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8641 1.8216 0.9293 5 6 3.3669 3.2422 0.9289 6 7 3.0843 3.8606 2.2266 7 16 3.8938 5.2306 2.6848 8 8 5.2730 4.9773 2.4555 9 8 3.3719 5.5996 3.9539 10 6 3.4299 6.5096 1.5651 11 6 2.6946 7.5846 2.0105 12 6 2.3226 8.5888 1.1304 13 6 2.6914 8.5266 -0.2048 14 6 3.4316 7.4645 -0.6707 15 6 3.8149 6.4392 0.2138 16 6 4.5762 5.3430 -0.2536 17 1 5.4019 4.9694 0.3338 18 6 4.2598 4.7424 -1.4774 19 7 5.1812 4.1007 -2.1487 20 14 2.5218 4.8571 -2.1523 21 1 1.7344 3.6844 -1.6940 22 1 1.8820 6.1047 -1.6630 23 1 2.5672 4.8733 -3.6365 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7065 2.1087 -0.7662 30 1 3.1896 1.1338 1.6957 31 1 2.8654 3.8048 0.1414 32 1 4.4421 3.2470 0.7506 33 1 2.4229 3.4674 2.8174 34 1 2.4022 7.6435 3.0485 35 1 1.7416 9.4262 1.4874 36 1 2.3964 9.3149 -0.8816 37 1 3.7181 7.4183 -1.7110 38 1 4.9618 3.6841 -2.9967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601427954.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:22 Heat of formation + Delta-G solvation = -65.894646 kcal Electronic energy + Delta-G solvation = -22405.727985 eV Core-core repulsion = 19146.178343 eV Total energy + Delta-G solvation = -3259.549642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.63157 -38.23803 -37.67330 -36.71220 -35.75802 -35.12213 -32.43179 -31.76313 -31.43283 -27.41285 -26.36995 -23.71256 -23.10660 -22.82571 -20.80044 -20.15683 -19.55843 -18.70762 -17.99458 -17.39111 -16.88708 -16.19183 -15.97032 -15.66584 -15.38630 -15.15473 -14.88170 -14.79645 -14.36490 -14.12626 -13.89721 -13.60313 -13.20434 -13.18286 -13.04449 -13.00201 -12.89810 -12.76196 -12.48393 -12.32955 -12.02068 -11.77126 -11.75858 -11.49664 -11.20373 -11.04518 -10.42557 -9.97273 -9.82065 -9.40341 -8.93551 -6.63259 -0.22609 0.35524 0.78890 1.23639 1.27971 1.31462 1.44477 2.11556 2.40335 2.50039 2.90801 3.29988 3.69067 3.90642 4.12071 4.24925 4.35125 4.35783 4.47260 4.50963 4.62228 4.69824 4.78215 4.79902 4.94704 4.98306 5.09358 5.17348 5.21685 5.25635 5.38090 5.39969 5.56681 5.74628 5.76994 5.86681 5.88779 6.11667 6.32951 6.38063 6.58384 6.73977 8.10284 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.007848 C = 0.006247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.395342 B = 3566.942630 C = 4481.304753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.153 4.153 4 C -0.174 4.174 5 C 0.154 3.846 6 N -1.102 6.102 7 S 2.721 3.279 8 O -1.002 7.002 9 O -1.005 7.005 10 C -0.775 4.775 11 C -0.010 4.010 12 C -0.236 4.236 13 C -0.056 4.056 14 C -0.219 4.219 15 C 0.148 3.852 16 C -0.516 4.516 17 H 0.097 0.903 18 C 0.082 3.918 19 N -0.809 5.809 20 Si 0.892 3.108 21 H -0.231 1.231 22 H -0.228 1.228 23 H -0.267 1.267 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.129 0.871 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.422 0.578 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.105 0.895 38 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.347 -4.847 0.456 11.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.172 4.172 4 C -0.194 4.194 5 C 0.029 3.971 6 N -0.863 5.863 7 S 2.817 3.183 8 O -0.992 6.992 9 O -0.995 6.995 10 C -0.869 4.869 11 C -0.030 4.030 12 C -0.255 4.255 13 C -0.074 4.074 14 C -0.238 4.238 15 C 0.144 3.856 16 C -0.544 4.544 17 H 0.114 0.886 18 C -0.139 4.139 19 N -0.432 5.432 20 Si 0.712 3.288 21 H -0.156 1.156 22 H -0.151 1.151 23 H -0.192 1.192 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.147 0.853 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.257 0.743 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.123 0.877 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.457 -4.900 0.860 10.686 hybrid contribution -0.530 0.284 -0.929 1.107 sum -9.988 -4.616 -0.069 11.003 Atomic orbital electron populations 1.21713 0.94216 1.02528 1.01910 1.20692 0.96882 0.92290 1.03197 1.23314 0.96835 0.98817 0.98251 1.23088 0.99318 0.96075 1.00909 1.20760 1.01155 0.91635 0.83560 1.55130 1.58565 1.43906 1.28667 1.00313 0.72923 0.73141 0.71924 1.93468 1.34164 1.85243 1.86373 1.93435 1.81094 1.84001 1.41011 1.30347 1.23952 1.20088 1.12476 1.20753 0.91158 0.91775 0.99275 1.21068 1.08881 1.01782 0.93801 1.21344 0.93452 0.96574 0.96078 1.21510 1.06667 0.96295 0.99357 1.17274 0.86631 0.91682 0.89990 1.19976 1.15028 1.14345 1.05004 0.88558 1.26530 1.01269 0.92204 0.93856 1.69779 1.35675 1.25127 1.12588 0.86582 0.80722 0.82998 0.78523 1.15597 1.15080 1.19202 0.92975 0.90843 0.92759 0.90363 0.90450 0.88190 0.85302 0.91836 0.90793 0.74285 0.85162 0.84327 0.84529 0.87722 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.89 71.98 0.71 -1.93 16 2 C -0.09 -1.96 6.38 29.85 0.19 -1.77 16 3 C -0.15 -4.34 9.12 25.64 0.23 -4.10 16 4 C -0.17 -5.42 9.28 25.64 0.24 -5.18 16 5 C 0.15 6.00 4.48 85.63 0.38 6.38 16 6 N -1.10 -40.62 5.97 -190.80 -1.14 -41.76 16 7 S 2.72 118.92 5.44 -56.49 -0.31 118.62 16 8 O -1.00 -51.26 15.09 -128.00 -1.93 -53.19 16 9 O -1.00 -44.05 16.97 -128.00 -2.17 -46.22 16 10 C -0.78 -35.23 5.94 22.73 0.14 -35.10 16 11 C -0.01 -0.40 9.54 22.22 0.21 -0.19 16 12 C -0.24 -8.63 10.05 22.46 0.23 -8.41 16 13 C -0.06 -2.12 10.02 22.22 0.22 -1.89 16 14 C -0.22 -9.63 6.79 22.73 0.15 -9.47 16 15 C 0.15 7.15 4.61 -21.29 -0.10 7.05 16 16 C -0.52 -26.32 5.13 23.46 0.12 -26.20 16 17 H 0.10 5.57 5.38 -2.91 -0.02 5.55 16 18 C 0.08 3.89 4.19 85.26 0.36 4.24 16 19 N -0.81 -39.62 13.93 21.83 0.30 -39.32 16 20 Si 0.89 35.05 24.43 68.60 1.68 36.73 16 21 H -0.23 -8.20 4.83 99.48 0.48 -7.72 16 22 H -0.23 -9.12 5.46 99.48 0.54 -8.57 16 23 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.08 1.45 7.79 -2.39 -0.02 1.43 16 29 H 0.10 3.12 5.69 -2.91 -0.02 3.10 16 30 H 0.13 3.44 7.84 -2.91 -0.02 3.41 16 31 H 0.06 2.59 3.04 -2.39 -0.01 2.58 16 32 H 0.07 3.36 5.91 -2.39 -0.01 3.35 16 33 H 0.42 12.51 8.67 -96.74 -0.84 11.67 16 34 H 0.13 4.79 7.32 -2.91 -0.02 4.77 16 35 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 36 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 37 H 0.10 4.49 6.93 -2.91 -0.02 4.47 16 38 H 0.30 13.04 8.30 -92.71 -0.77 12.27 16 Total: -1.00 -61.63 310.22 -0.62 -62.25 By element: Atomic # 1 Polarization: 39.61 SS G_CDS: -0.14 Total: 39.47 kcal Atomic # 6 Polarization: -79.67 SS G_CDS: 3.09 Total: -76.58 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -0.84 Total: -81.08 kcal Atomic # 8 Polarization: -95.31 SS G_CDS: -4.10 Total: -99.41 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 1.68 Total: 36.73 kcal Atomic # 16 Polarization: 118.92 SS G_CDS: -0.31 Total: 118.62 kcal Total: -61.63 -0.62 -62.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601427954.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.642 kcal (2) G-P(sol) polarization free energy of solvation -61.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds