Wall clock time and date at job start Tue Mar 31 2020 06:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 119.99713 * 2 1 4 4 C 1.50700 * 120.00360 * 180.02562 * 2 1 3 5 5 C 1.52992 * 109.47214 * 94.99494 * 4 2 1 6 6 N 1.46497 * 109.47126 * 180.02562 * 5 4 2 7 7 S 1.65605 * 120.00271 * 163.10790 * 6 5 4 8 8 O 1.42107 * 106.39734 * 313.24981 * 7 6 5 9 9 O 1.42101 * 106.40327 * 180.33292 * 7 6 5 10 10 C 1.76195 * 107.21812 * 66.78621 * 7 6 5 11 11 C 1.37642 * 120.12610 * 111.39606 * 10 7 6 12 12 C 1.38612 * 120.24700 * 180.32087 * 11 10 7 13 13 C 1.38658 * 120.50219 * 359.66661 * 12 11 10 14 14 C 1.37593 * 120.24466 * 0.02562 * 13 12 11 15 15 C 1.40695 * 120.12958 * 291.08489 * 10 7 6 16 16 C 1.41391 * 120.24637 * 359.97438 * 15 10 7 17 17 H 1.07998 * 120.00051 * 331.29155 * 16 15 10 18 18 C 1.39943 * 120.00393 * 151.28897 * 16 15 10 19 19 N 1.30831 * 119.99418 * 339.81346 * 18 16 15 20 20 Si 1.86790 * 120.00488 * 159.81822 * 18 16 15 21 21 H 1.48505 * 109.47083 * 269.99860 * 20 18 16 22 22 H 1.48507 * 109.47215 * 29.99604 * 20 18 16 23 23 H 1.48502 * 109.47586 * 149.99786 * 20 18 16 24 24 H 1.08004 * 120.00045 * 180.02562 * 1 2 3 25 25 H 1.07996 * 120.00746 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47158 * 270.00365 * 3 2 1 27 27 H 1.09004 * 109.46736 * 30.00035 * 3 2 1 28 28 H 1.08995 * 109.46796 * 150.00201 * 3 2 1 29 29 H 1.09003 * 109.46791 * 334.99738 * 4 2 1 30 30 H 1.09001 * 109.47037 * 215.00158 * 4 2 1 31 31 H 1.09003 * 109.47042 * 60.00398 * 5 4 2 32 32 H 1.09001 * 109.47661 * 300.00282 * 5 4 2 33 33 H 0.97000 * 119.99971 * 343.10011 * 6 5 4 34 34 H 1.08003 * 119.87897 * 0.02562 * 11 10 7 35 35 H 1.08006 * 119.74775 * 179.69162 * 12 11 10 36 36 H 1.07994 * 119.87270 * 180.02562 * 13 12 11 37 37 H 1.08002 * 120.12341 * 180.02562 * 14 13 12 38 38 H 0.96997 * 120.00411 * 355.16932 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 6 2.4273 -1.6833 -1.4377 6 7 3.1594 -2.9522 -1.4383 7 16 3.3172 -3.8165 -2.8421 8 8 2.0262 -3.8587 -3.4345 9 8 4.0603 -4.9825 -2.5140 10 6 4.3317 -2.8686 -3.9269 11 6 5.5974 -3.3050 -4.2465 12 6 6.4001 -2.5579 -5.0944 13 6 5.9369 -1.3682 -5.6353 14 6 4.6727 -0.9160 -5.3345 15 6 3.8488 -1.6661 -4.4749 16 6 2.5477 -1.2116 -4.1593 17 1 1.7722 -1.9220 -3.9138 18 6 2.2647 0.1589 -4.1650 19 7 3.2376 1.0281 -4.0666 20 14 0.4980 0.7473 -4.3128 21 1 0.1531 0.9229 -5.7465 22 1 -0.4109 -0.2574 -3.7045 23 1 0.3471 2.0440 -3.6049 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9352 0.0004 26 1 2.2450 1.6199 -1.0277 27 1 1.4743 2.0648 0.5139 28 1 3.0158 1.1748 0.5138 29 1 1.4386 -2.0856 0.4334 30 1 2.9742 -1.1990 0.5889 31 1 3.0523 -0.9027 -1.8717 32 1 1.5167 -1.7893 -2.0272 33 1 3.5517 -3.2862 -0.6164 34 1 5.9683 -4.2305 -3.8314 35 1 7.3939 -2.9054 -5.3359 36 1 6.5707 -0.7945 -6.2951 37 1 4.3137 0.0108 -5.7573 38 1 4.1467 0.7239 -3.9195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601428519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:25 Heat of formation + Delta-G solvation = -57.765845 kcal Electronic energy + Delta-G solvation = -22717.123658 eV Core-core repulsion = 19457.926507 eV Total energy + Delta-G solvation = -3259.197151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -37.96954 -36.90231 -36.27273 -34.92745 -34.28397 -33.78116 -30.25292 -29.46122 -28.41629 -26.94476 -25.50330 -22.65626 -21.82423 -21.21335 -18.92830 -18.28422 -17.97598 -16.83760 -16.16869 -15.51009 -14.91484 -14.83041 -14.58353 -14.30129 -14.02470 -13.79614 -13.28983 -13.05931 -12.87708 -12.55350 -12.24506 -11.93429 -11.67253 -11.45570 -11.29894 -11.26490 -11.20578 -11.08544 -10.96804 -10.91913 -10.62612 -10.49238 -10.45790 -9.81788 -9.35949 -9.33220 -8.83882 -8.59992 -8.25929 -7.83131 -7.46749 -4.88203 1.48740 2.19629 2.47461 2.61509 3.06084 3.15233 3.26581 3.82299 3.96739 4.30509 4.65290 5.06470 5.13624 5.15068 5.39138 5.55757 5.63514 5.80841 5.89740 5.93663 5.96948 6.03200 6.12197 6.24621 6.26529 6.31527 6.48269 6.60180 6.77962 6.85630 6.87365 7.11214 7.13066 7.26710 7.35268 7.54091 7.63371 7.66935 7.79572 7.95634 8.36483 8.55163 9.75016 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.008527 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.091232 B = 3282.938440 C = 4315.392305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.123 4.123 4 C -0.097 4.097 5 C 0.130 3.870 6 N -1.123 6.123 7 S 2.707 3.293 8 O -0.973 6.973 9 O -1.000 7.000 10 C -0.781 4.781 11 C 0.013 3.987 12 C -0.262 4.262 13 C -0.056 4.056 14 C -0.212 4.212 15 C 0.166 3.834 16 C -0.525 4.525 17 H 0.121 0.879 18 C 0.046 3.954 19 N -0.780 5.780 20 Si 1.051 2.949 21 H -0.271 1.271 22 H -0.264 1.264 23 H -0.270 1.270 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.405 0.595 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.040 1.637 6.656 7.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.113 4.113 3 C -0.180 4.180 4 C -0.136 4.136 5 C 0.005 3.995 6 N -0.879 5.879 7 S 2.805 3.195 8 O -0.963 6.963 9 O -0.990 6.990 10 C -0.876 4.876 11 C -0.007 4.007 12 C -0.282 4.282 13 C -0.075 4.075 14 C -0.232 4.232 15 C 0.161 3.839 16 C -0.552 4.552 17 H 0.138 0.862 18 C -0.178 4.178 19 N -0.402 5.402 20 Si 0.874 3.126 21 H -0.197 1.197 22 H -0.188 1.188 23 H -0.195 1.195 24 H 0.115 0.885 25 H 0.114 0.886 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.237 0.763 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.130 0.870 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.431 2.285 6.247 7.485 hybrid contribution 1.838 -0.808 0.022 2.008 sum -1.593 1.477 6.269 6.634 Atomic orbital electron populations 1.23652 0.95251 1.01724 1.03472 1.21623 0.95338 0.95514 0.98782 1.20917 0.99621 0.94228 1.03220 1.20997 1.00060 0.94720 0.97787 1.21639 0.97378 0.84934 0.95592 1.55564 1.70127 1.36133 1.26087 1.00814 0.73823 0.72175 0.72736 1.93470 1.39890 1.86428 1.76523 1.93450 1.73953 1.47184 1.84455 1.29799 1.11382 1.18521 1.27877 1.20317 0.91472 0.96084 0.92837 1.20474 1.00078 0.99075 1.08592 1.20847 0.95300 0.94914 0.96445 1.21396 0.95617 1.02812 1.03345 1.17054 0.91743 0.88422 0.86644 1.21669 0.96825 0.96619 1.40086 0.86199 1.27045 1.06863 0.92879 0.91024 1.70462 1.04174 1.39216 1.26383 0.83811 0.72693 0.77283 0.78839 1.19656 1.18789 1.19522 0.88500 0.88595 0.90210 0.92259 0.92157 0.91157 0.91185 0.90039 0.89660 0.76313 0.87264 0.88496 0.88618 0.86958 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.74 13.89 29.02 0.40 -2.34 16 2 C -0.11 -1.60 5.31 -101.06 -0.54 -2.13 16 3 C -0.12 -1.67 10.03 36.01 0.36 -1.31 16 4 C -0.10 -1.39 5.53 -27.89 -0.15 -1.55 16 5 C 0.13 2.34 4.43 -4.05 -0.02 2.32 16 6 N -1.12 -20.03 5.99 -10.62 -0.06 -20.09 16 7 S 2.71 58.51 5.44 -107.50 -0.58 57.92 16 8 O -0.97 -23.45 14.85 -57.17 -0.85 -24.30 16 9 O -1.00 -22.56 16.97 -57.17 -0.97 -23.54 16 10 C -0.78 -18.31 5.97 -38.87 -0.23 -18.54 16 11 C 0.01 0.29 9.53 -39.66 -0.38 -0.09 16 12 C -0.26 -5.60 10.05 -39.29 -0.39 -6.00 16 13 C -0.06 -1.22 10.02 -39.66 -0.40 -1.61 16 14 C -0.21 -5.02 7.82 -38.88 -0.30 -5.32 16 15 C 0.17 4.07 5.27 -106.83 -0.56 3.50 16 16 C -0.53 -12.52 4.82 -37.74 -0.18 -12.70 16 17 H 0.12 2.95 4.10 -52.49 -0.22 2.73 16 18 C 0.05 1.04 4.56 -17.34 -0.08 0.96 16 19 N -0.78 -17.94 12.40 55.55 0.69 -17.25 16 20 Si 1.05 20.17 29.98 -169.99 -5.10 15.07 16 21 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 23 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 24 H 0.10 1.24 7.99 -52.48 -0.42 0.82 16 25 H 0.10 1.16 8.04 -52.49 -0.42 0.74 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 28 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 29 H 0.07 0.92 7.99 -51.93 -0.41 0.51 16 30 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 31 H 0.08 1.62 6.43 -51.93 -0.33 1.28 16 32 H 0.09 1.67 6.09 -51.93 -0.32 1.36 16 33 H 0.40 5.95 8.67 -34.47 -0.30 5.66 16 34 H 0.11 2.26 7.33 -52.48 -0.38 1.88 16 35 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 36 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 37 H 0.11 2.67 6.49 -52.49 -0.34 2.33 16 38 H 0.30 7.15 6.30 -40.82 -0.26 6.90 16 LS Contribution 322.11 15.07 4.85 4.85 Total: -1.00 -27.83 322.11 -9.22 -37.06 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -4.73 Total: 15.08 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: -2.47 Total: -44.81 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.63 Total: -37.34 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -1.82 Total: -47.83 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.10 Total: 15.07 kcal Atomic # 16 Polarization: 58.51 SS G_CDS: -0.58 Total: 57.92 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.83 -9.22 -37.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601428519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.711 kcal (2) G-P(sol) polarization free energy of solvation -27.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds