Wall clock time and date at job start Tue Mar 31 2020 06:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 119.99713 * 2 1 4 4 C 1.50700 * 120.00360 * 180.02562 * 2 1 3 5 5 C 1.52992 * 109.47214 * 94.99494 * 4 2 1 6 6 N 1.46497 * 109.47126 * 180.02562 * 5 4 2 7 7 S 1.65605 * 120.00271 * 163.10790 * 6 5 4 8 8 O 1.42107 * 106.39734 * 313.24981 * 7 6 5 9 9 O 1.42101 * 106.40327 * 180.33292 * 7 6 5 10 10 C 1.76195 * 107.21812 * 66.78621 * 7 6 5 11 11 C 1.37642 * 120.12610 * 111.39606 * 10 7 6 12 12 C 1.38612 * 120.24700 * 180.32087 * 11 10 7 13 13 C 1.38658 * 120.50219 * 359.66661 * 12 11 10 14 14 C 1.37593 * 120.24466 * 0.02562 * 13 12 11 15 15 C 1.40695 * 120.12958 * 291.08489 * 10 7 6 16 16 C 1.41391 * 120.24637 * 359.97438 * 15 10 7 17 17 H 1.07998 * 120.00051 * 331.29155 * 16 15 10 18 18 C 1.39943 * 120.00393 * 151.28897 * 16 15 10 19 19 N 1.30831 * 119.99418 * 339.81346 * 18 16 15 20 20 Si 1.86790 * 120.00488 * 159.81822 * 18 16 15 21 21 H 1.48505 * 109.47083 * 269.99860 * 20 18 16 22 22 H 1.48507 * 109.47215 * 29.99604 * 20 18 16 23 23 H 1.48502 * 109.47586 * 149.99786 * 20 18 16 24 24 H 1.08004 * 120.00045 * 180.02562 * 1 2 3 25 25 H 1.07996 * 120.00746 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47158 * 270.00365 * 3 2 1 27 27 H 1.09004 * 109.46736 * 30.00035 * 3 2 1 28 28 H 1.08995 * 109.46796 * 150.00201 * 3 2 1 29 29 H 1.09003 * 109.46791 * 334.99738 * 4 2 1 30 30 H 1.09001 * 109.47037 * 215.00158 * 4 2 1 31 31 H 1.09003 * 109.47042 * 60.00398 * 5 4 2 32 32 H 1.09001 * 109.47661 * 300.00282 * 5 4 2 33 33 H 0.97000 * 119.99971 * 343.10011 * 6 5 4 34 34 H 1.08003 * 119.87897 * 0.02562 * 11 10 7 35 35 H 1.08006 * 119.74775 * 179.69162 * 12 11 10 36 36 H 1.07994 * 119.87270 * 180.02562 * 13 12 11 37 37 H 1.08002 * 120.12341 * 180.02562 * 14 13 12 38 38 H 0.96997 * 120.00411 * 355.16932 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 6 2.4273 -1.6833 -1.4377 6 7 3.1594 -2.9522 -1.4383 7 16 3.3172 -3.8165 -2.8421 8 8 2.0262 -3.8587 -3.4345 9 8 4.0603 -4.9825 -2.5140 10 6 4.3317 -2.8686 -3.9269 11 6 5.5974 -3.3050 -4.2465 12 6 6.4001 -2.5579 -5.0944 13 6 5.9369 -1.3682 -5.6353 14 6 4.6727 -0.9160 -5.3345 15 6 3.8488 -1.6661 -4.4749 16 6 2.5477 -1.2116 -4.1593 17 1 1.7722 -1.9220 -3.9138 18 6 2.2647 0.1589 -4.1650 19 7 3.2376 1.0281 -4.0666 20 14 0.4980 0.7473 -4.3128 21 1 0.1531 0.9229 -5.7465 22 1 -0.4109 -0.2574 -3.7045 23 1 0.3471 2.0440 -3.6049 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9352 0.0004 26 1 2.2450 1.6199 -1.0277 27 1 1.4743 2.0648 0.5139 28 1 3.0158 1.1748 0.5138 29 1 1.4386 -2.0856 0.4334 30 1 2.9742 -1.1990 0.5889 31 1 3.0523 -0.9027 -1.8717 32 1 1.5167 -1.7893 -2.0272 33 1 3.5517 -3.2862 -0.6164 34 1 5.9683 -4.2305 -3.8314 35 1 7.3939 -2.9054 -5.3359 36 1 6.5707 -0.7945 -6.2951 37 1 4.3137 0.0108 -5.7573 38 1 4.1467 0.7239 -3.9195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601428519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:24 Heat of formation + Delta-G solvation = -74.588371 kcal Electronic energy + Delta-G solvation = -22717.853137 eV Core-core repulsion = 19457.926507 eV Total energy + Delta-G solvation = -3259.926630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.70513 -38.34020 -37.87158 -36.73971 -35.93848 -35.20576 -32.00010 -31.21391 -29.69595 -28.00587 -27.25357 -24.06636 -23.51595 -22.96280 -20.54546 -19.96449 -19.30553 -18.41304 -17.86057 -17.11936 -16.62251 -16.30153 -16.02486 -15.66354 -15.52666 -15.37722 -14.97401 -14.52508 -14.19568 -14.06163 -13.84850 -13.50054 -13.27590 -13.05954 -13.02746 -12.87225 -12.74884 -12.53510 -12.40960 -12.26111 -12.14431 -11.96682 -11.75375 -11.52931 -11.07826 -11.02131 -10.26430 -10.02510 -9.83224 -9.60649 -9.24695 -6.68162 -0.21279 0.42538 0.86724 1.38665 1.49040 1.59230 1.76826 2.24404 2.34325 2.58984 2.91694 3.37142 3.68898 4.00086 4.05094 4.21750 4.26269 4.33279 4.45308 4.62253 4.73229 4.75669 4.80802 4.82808 4.92163 5.08484 5.11345 5.14632 5.21193 5.34715 5.39457 5.51094 5.60042 5.78486 5.80191 5.86930 6.01025 6.03976 6.17779 6.29552 6.59066 6.77514 7.95829 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.008527 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.091232 B = 3282.938440 C = 4315.392305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 C -0.121 4.121 4 C -0.091 4.091 5 C 0.133 3.867 6 N -1.108 6.108 7 S 2.725 3.275 8 O -1.000 7.000 9 O -1.010 7.010 10 C -0.800 4.800 11 C -0.002 4.002 12 C -0.262 4.262 13 C -0.055 4.055 14 C -0.236 4.236 15 C 0.144 3.856 16 C -0.537 4.537 17 H 0.109 0.891 18 C 0.028 3.972 19 N -0.787 5.787 20 Si 1.077 2.923 21 H -0.267 1.267 22 H -0.257 1.257 23 H -0.255 1.255 24 H 0.102 0.898 25 H 0.110 0.890 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.421 0.579 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 1.898 7.566 8.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.132 4.132 3 C -0.177 4.177 4 C -0.130 4.130 5 C 0.007 3.993 6 N -0.868 5.868 7 S 2.821 3.179 8 O -0.990 6.990 9 O -1.001 7.001 10 C -0.894 4.894 11 C -0.022 4.022 12 C -0.282 4.282 13 C -0.073 4.073 14 C -0.255 4.255 15 C 0.140 3.860 16 C -0.564 4.564 17 H 0.126 0.874 18 C -0.193 4.193 19 N -0.409 5.409 20 Si 0.894 3.106 21 H -0.192 1.192 22 H -0.180 1.180 23 H -0.179 1.179 24 H 0.121 0.879 25 H 0.128 0.872 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.257 0.743 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.385 2.537 7.159 8.316 hybrid contribution 1.900 -0.937 -0.258 2.134 sum -1.486 1.599 6.901 7.238 Atomic orbital electron populations 1.23896 0.95113 1.02747 1.01681 1.21709 0.95801 0.95501 1.00218 1.20890 1.00383 0.94550 1.01905 1.20964 1.01243 0.95436 0.95321 1.21531 0.95957 0.83946 0.97846 1.55182 1.70036 1.35945 1.25648 1.00182 0.72934 0.71876 0.72935 1.93432 1.41187 1.86871 1.77552 1.93424 1.74034 1.47921 1.84671 1.30111 1.12170 1.18429 1.28714 1.20648 0.91413 0.96900 0.93253 1.20886 1.01291 0.98553 1.07427 1.21204 0.94814 0.95144 0.96183 1.21445 0.96848 1.02978 1.04270 1.17330 0.92342 0.89164 0.87196 1.21638 0.96551 0.97052 1.41184 0.87361 1.27885 1.08863 0.92578 0.89980 1.70528 1.03892 1.39109 1.27347 0.83530 0.69898 0.77867 0.79271 1.19235 1.18038 1.17902 0.87931 0.87209 0.92742 0.90425 0.91518 0.89631 0.89611 0.92178 0.91554 0.74333 0.85840 0.85297 0.85631 0.87883 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.88 13.89 67.78 0.94 -3.94 16 2 C -0.13 -3.54 5.31 -16.48 -0.09 -3.63 16 3 C -0.12 -3.13 10.03 71.24 0.71 -2.41 16 4 C -0.09 -2.47 5.53 29.85 0.16 -2.31 16 5 C 0.13 4.75 4.43 86.38 0.38 5.13 16 6 N -1.11 -38.90 5.99 -187.50 -1.12 -40.02 16 7 S 2.72 117.70 5.44 -56.49 -0.31 117.40 16 8 O -1.00 -48.83 14.85 -128.00 -1.90 -50.73 16 9 O -1.01 -44.90 16.97 -128.00 -2.17 -47.07 16 10 C -0.80 -37.64 5.97 22.73 0.14 -37.51 16 11 C 0.00 -0.11 9.53 22.22 0.21 0.11 16 12 C -0.26 -10.70 10.05 22.46 0.23 -10.48 16 13 C -0.05 -2.31 10.02 22.22 0.22 -2.09 16 14 C -0.24 -11.24 7.82 22.73 0.18 -11.06 16 15 C 0.14 7.17 5.27 -21.29 -0.11 7.06 16 16 C -0.54 -26.14 4.82 23.46 0.11 -26.02 16 17 H 0.11 5.47 4.10 -2.91 -0.01 5.46 16 18 C 0.03 1.29 4.56 85.25 0.39 1.68 16 19 N -0.79 -36.70 12.40 21.83 0.27 -36.43 16 20 Si 1.08 40.16 29.98 68.60 2.06 42.22 16 21 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 22 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 23 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 24 H 0.10 2.39 7.99 -2.91 -0.02 2.37 16 25 H 0.11 2.38 8.04 -2.91 -0.02 2.35 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.08 1.67 8.06 -2.39 -0.02 1.65 16 28 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 29 H 0.09 2.06 7.99 -2.39 -0.02 2.04 16 30 H 0.09 2.04 8.10 -2.39 -0.02 2.02 16 31 H 0.06 2.42 6.43 -2.39 -0.02 2.41 16 32 H 0.07 2.63 6.09 -2.39 -0.01 2.61 16 33 H 0.42 11.82 8.67 -96.74 -0.84 10.98 16 34 H 0.12 4.95 7.33 -2.91 -0.02 4.93 16 35 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 36 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 37 H 0.10 5.01 6.49 -2.91 -0.02 4.99 16 38 H 0.29 14.18 6.30 -92.71 -0.58 13.59 16 Total: -1.00 -59.10 322.11 0.73 -58.37 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: 0.43 Total: 41.73 kcal Atomic # 6 Polarization: -88.95 SS G_CDS: 3.48 Total: -85.47 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -0.85 Total: -76.45 kcal Atomic # 8 Polarization: -93.73 SS G_CDS: -4.07 Total: -97.80 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.06 Total: 42.22 kcal Atomic # 16 Polarization: 117.70 SS G_CDS: -0.31 Total: 117.40 kcal Total: -59.10 0.73 -58.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601428519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.216 kcal (2) G-P(sol) polarization free energy of solvation -59.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds