Wall clock time and date at job start Tue Mar 31 2020 06:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99705 * 2 1 4 4 C 1.52994 * 109.47659 * 94.99541 * 3 2 1 5 5 C 1.50699 * 120.00256 * 179.97438 * 2 1 3 6 6 N 1.46498 * 109.46926 * 95.00598 * 5 2 1 7 7 S 1.65602 * 119.99723 * 165.98725 * 6 5 2 8 8 O 1.42104 * 106.40133 * 176.34915 * 7 6 5 9 9 O 1.42104 * 106.40177 * 309.26397 * 7 6 5 10 10 C 1.76197 * 107.22117 * 62.80540 * 7 6 5 11 11 C 1.37635 * 120.12923 * 245.80981 * 10 7 6 12 12 C 1.38616 * 120.25099 * 179.97438 * 11 10 7 13 13 C 1.38658 * 120.49689 * 0.03104 * 12 11 10 14 14 C 1.37600 * 120.25128 * 0.02562 * 13 12 11 15 15 C 1.40694 * 120.12542 * 65.53846 * 10 7 6 16 16 C 1.41400 * 120.24580 * 359.97438 * 15 10 7 17 17 H 1.07997 * 119.99534 * 331.43360 * 16 15 10 18 18 C 1.39950 * 119.99932 * 151.43133 * 16 15 10 19 19 N 1.30814 * 120.00114 * 348.41132 * 18 16 15 20 20 Si 1.86804 * 119.99579 * 168.41387 * 18 16 15 21 21 H 1.48502 * 109.47097 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46795 * 120.00207 * 20 18 16 23 23 H 1.48495 * 109.47033 * 239.99951 * 20 18 16 24 24 H 1.07995 * 120.00487 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.99391 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46657 * 214.99768 * 3 2 1 27 27 H 1.09003 * 109.46767 * 334.98892 * 3 2 1 28 28 H 1.08996 * 109.47164 * 180.02562 * 4 3 2 29 29 H 1.09008 * 109.46791 * 299.99957 * 4 3 2 30 30 H 1.08999 * 109.47221 * 59.99473 * 4 3 2 31 31 H 1.08995 * 109.47232 * 335.00119 * 5 2 1 32 32 H 1.09004 * 109.47129 * 215.00451 * 5 2 1 33 33 H 0.96996 * 119.99973 * 345.70710 * 6 5 2 34 34 H 1.08001 * 119.87777 * 0.02562 * 11 10 7 35 35 H 1.08000 * 119.75185 * 180.02562 * 12 11 10 36 36 H 1.08000 * 119.87550 * 179.97438 * 13 12 11 37 37 H 1.08000 * 120.12533 * 179.97438 * 14 13 12 38 38 H 0.97002 * 120.00071 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.4273 1.6842 1.4369 5 6 2.0636 -1.3051 0.0006 6 7 2.4121 -1.6683 -1.3752 7 16 3.5296 -2.8567 -1.6600 8 8 3.5809 -3.0299 -3.0695 9 8 4.6689 -2.5326 -0.8749 10 6 2.8788 -4.3542 -0.9979 11 6 3.4968 -4.9634 0.0705 12 6 2.9866 -6.1413 0.5936 13 6 1.8505 -6.7196 0.0482 14 6 1.2170 -6.1287 -1.0209 15 6 1.7221 -4.9290 -1.5557 16 6 1.0751 -4.3088 -2.6495 17 1 1.1371 -3.2382 -2.7771 18 6 0.3545 -5.0824 -3.5665 19 7 0.4620 -6.3860 -3.5495 20 14 -0.7608 -4.2533 -4.8148 21 1 -0.7060 -2.7813 -4.6268 22 1 -0.3069 -4.5939 -6.1871 23 1 -2.1555 -4.7258 -4.6232 24 1 -0.5401 0.9352 -0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 2.9742 1.1989 -0.5895 27 1 1.4385 2.0854 -0.4345 28 1 2.9718 2.6284 1.4369 29 1 1.5164 1.7904 2.0263 30 1 3.0522 0.9039 1.8714 31 1 1.4387 -2.0852 0.4352 32 1 2.9742 -1.1985 0.5901 33 1 1.9853 -1.2155 -2.1193 34 1 4.3821 -4.5215 0.5034 35 1 3.4777 -6.6122 1.4324 36 1 1.4619 -7.6377 0.4635 37 1 0.3325 -6.5811 -1.4444 38 1 -0.0377 -6.9222 -4.1849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601433069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:27 Heat of formation + Delta-G solvation = -72.789599 kcal Electronic energy + Delta-G solvation = -22089.663267 eV Core-core repulsion = 18829.814638 eV Total energy + Delta-G solvation = -3259.848630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.38623 -38.33843 -37.94800 -36.66476 -35.68811 -34.59110 -32.02633 -31.36446 -31.08957 -27.38730 -26.63449 -24.33846 -23.44128 -22.94344 -20.35282 -19.62742 -19.50435 -18.44222 -17.77619 -17.24037 -16.91464 -16.08435 -15.97328 -15.79404 -15.40348 -15.03157 -14.93603 -14.48193 -14.15437 -13.90116 -13.75448 -13.45545 -13.24074 -13.00306 -12.95011 -12.90371 -12.84762 -12.80595 -12.60517 -12.44812 -12.10972 -11.70173 -11.65240 -11.55718 -11.20719 -11.14471 -10.27353 -10.09480 -9.83509 -9.43458 -8.79675 -6.61657 -0.18976 0.52629 0.96633 1.28053 1.36231 1.49331 1.51734 2.15467 2.45448 2.64118 2.98289 3.48394 3.73172 3.92096 3.95604 4.32799 4.42568 4.43932 4.50212 4.56870 4.67092 4.71450 4.84233 4.91368 4.99997 5.06044 5.14967 5.15498 5.21632 5.30426 5.43860 5.51863 5.70323 5.72907 5.82485 5.95144 6.00337 6.08032 6.22189 6.47573 6.67562 6.83243 8.16441 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.006885 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.323667 B = 4065.810095 C = 5011.130903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.141 4.141 3 C -0.090 4.090 4 C -0.146 4.146 5 C 0.153 3.847 6 N -1.105 6.105 7 S 2.719 3.281 8 O -0.999 6.999 9 O -1.009 7.009 10 C -0.792 4.792 11 C -0.017 4.017 12 C -0.250 4.250 13 C -0.076 4.076 14 C -0.186 4.186 15 C 0.161 3.839 16 C -0.473 4.473 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.808 5.808 20 Si 0.976 3.024 21 H -0.247 1.247 22 H -0.269 1.269 23 H -0.254 1.254 24 H 0.123 0.877 25 H 0.095 0.905 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.419 0.581 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.585 10.694 5.760 12.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C -0.128 4.128 4 C -0.203 4.203 5 C 0.028 3.972 6 N -0.865 5.865 7 S 2.816 3.184 8 O -0.989 6.989 9 O -0.999 6.999 10 C -0.886 4.886 11 C -0.037 4.037 12 C -0.270 4.270 13 C -0.094 4.094 14 C -0.206 4.206 15 C 0.157 3.843 16 C -0.501 4.501 17 H 0.111 0.889 18 C -0.180 4.180 19 N -0.432 5.432 20 Si 0.796 3.204 21 H -0.170 1.170 22 H -0.194 1.194 23 H -0.178 1.178 24 H 0.141 0.859 25 H 0.114 0.886 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.255 0.745 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.721 10.524 5.372 12.125 hybrid contribution -0.940 -0.658 -0.599 1.294 sum -3.661 9.866 4.773 11.555 Atomic orbital electron populations 1.24026 0.94873 1.03013 0.97936 1.21710 0.95590 0.94541 1.02459 1.20643 1.00025 0.93643 0.98439 1.21740 1.01834 1.01460 0.95306 1.20276 0.99856 0.95399 0.81649 1.55340 1.62734 1.54465 1.13990 1.00376 0.72578 0.73307 0.72178 1.93489 1.86920 1.86609 1.31917 1.93419 1.49327 1.84636 1.72531 1.30162 1.13082 1.26791 1.18608 1.20589 0.96325 0.94559 0.92204 1.20900 1.01316 0.99489 1.05317 1.21257 0.95090 0.98183 0.94905 1.21588 1.02232 0.98935 0.97844 1.17327 0.86967 0.91051 0.88975 1.20175 1.27045 0.96499 1.06406 0.88881 1.26818 0.96163 0.95159 0.99839 1.69821 1.33239 1.07197 1.32979 0.85231 0.77792 0.80391 0.77031 1.17026 1.19410 1.17805 0.85893 0.88618 0.91938 0.89728 0.91392 0.91921 0.93336 0.91847 0.90471 0.74543 0.85964 0.85453 0.85951 0.86714 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 13.88 67.78 0.94 -2.47 16 2 C -0.14 -3.36 4.70 -16.49 -0.08 -3.44 16 3 C -0.09 -1.81 6.10 29.85 0.18 -1.62 16 4 C -0.15 -2.57 9.89 71.98 0.71 -1.86 16 5 C 0.15 4.64 6.35 85.63 0.54 5.18 16 6 N -1.11 -38.70 5.13 -190.79 -0.98 -39.68 16 7 S 2.72 120.19 4.96 -56.49 -0.28 119.91 16 8 O -1.00 -50.76 16.52 -128.00 -2.12 -52.88 16 9 O -1.01 -45.87 16.53 -128.00 -2.12 -47.98 16 10 C -0.79 -38.22 5.90 22.73 0.13 -38.09 16 11 C -0.02 -0.77 9.53 22.22 0.21 -0.56 16 12 C -0.25 -10.55 10.05 22.46 0.23 -10.33 16 13 C -0.08 -3.33 10.02 22.22 0.22 -3.10 16 14 C -0.19 -9.31 8.66 22.73 0.20 -9.11 16 15 C 0.16 8.33 5.55 -21.29 -0.12 8.22 16 16 C -0.47 -24.04 7.63 23.46 0.18 -23.86 16 17 H 0.09 4.42 5.82 -2.91 -0.02 4.40 16 18 C 0.04 1.84 5.24 85.26 0.45 2.29 16 19 N -0.81 -40.41 10.85 21.83 0.24 -40.18 16 20 Si 0.98 36.54 29.58 68.60 2.03 38.57 16 21 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 22 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 24 H 0.12 2.00 7.99 -2.91 -0.02 1.98 16 25 H 0.10 2.21 7.99 -2.91 -0.02 2.19 16 26 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.08 1.39 7.99 -2.39 -0.02 1.37 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.99 7.99 -2.39 -0.02 1.97 16 32 H 0.08 2.31 7.82 -2.39 -0.02 2.29 16 33 H 0.42 13.31 8.47 -96.75 -0.82 12.49 16 34 H 0.12 5.02 7.32 -2.91 -0.02 5.00 16 35 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 36 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 37 H 0.12 5.87 6.22 -2.91 -0.02 5.85 16 38 H 0.30 13.16 8.30 -92.71 -0.77 12.40 16 Total: -1.00 -64.20 332.99 0.83 -63.37 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: 0.25 Total: 37.61 kcal Atomic # 6 Polarization: -82.55 SS G_CDS: 3.80 Total: -78.75 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -0.74 Total: -79.85 kcal Atomic # 8 Polarization: -96.63 SS G_CDS: -4.23 Total: -100.86 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Atomic # 16 Polarization: 120.19 SS G_CDS: -0.28 Total: 119.91 kcal Total: -64.20 0.83 -63.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601433069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.418 kcal (2) G-P(sol) polarization free energy of solvation -64.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds