Wall clock time and date at job start Tue Mar 31 2020 07:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 115.55915 * 2 1 4 4 C 1.52998 * 117.49921 * 145.68452 * 2 1 3 5 5 C 1.53000 * 60.00160 * 107.49213 * 4 2 1 6 6 H 1.08995 * 117.49734 * 107.51227 * 5 4 2 7 7 C 1.50698 * 117.49972 * 252.51152 * 5 4 2 8 8 C 1.34507 * 125.78843 * 188.60541 * 7 5 4 9 9 C 1.41385 * 106.84104 * 180.02562 * 8 7 5 10 10 C 1.34515 * 106.84000 * 0.02562 * 9 8 7 11 11 C 1.50694 * 125.78835 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47481 * 90.02161 * 11 10 9 13 13 C 1.34776 * 120.00264 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00138 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00232 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.47569 * 180.02562 * 15 13 12 17 17 C 1.76192 * 100.00448 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99820 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00246 * 180.02562 * 17 16 15 20 20 N 1.31636 * 120.00023 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99985 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46894 * 89.99833 * 21 19 17 23 23 H 1.48494 * 109.47176 * 210.00301 * 21 19 17 24 24 H 1.48506 * 109.47036 * 330.00180 * 21 19 17 25 25 O 1.34300 * 125.78747 * 8.63001 * 7 5 4 26 26 H 1.09005 * 109.47283 * 205.68806 * 1 2 3 27 27 H 1.08995 * 109.47475 * 325.69315 * 1 2 3 28 28 H 1.09004 * 109.46726 * 85.69427 * 1 2 3 29 29 H 1.09003 * 117.49548 * 0.02562 * 4 2 1 30 30 H 1.09004 * 117.51785 * 214.97832 * 4 2 1 31 31 H 1.07995 * 126.58208 * 0.05697 * 8 7 5 32 32 H 1.08001 * 126.58267 * 179.73335 * 9 8 7 33 33 H 1.09001 * 109.47124 * 210.02207 * 11 10 9 34 34 H 1.09002 * 109.47302 * 330.01924 * 11 10 9 35 35 H 0.97001 * 119.99910 * 359.97438 * 12 11 10 36 36 H 1.09001 * 109.47172 * 300.00716 * 15 13 12 37 37 H 1.09002 * 109.46886 * 60.00206 * 15 13 12 38 38 H 0.96996 * 119.99982 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2364 -1.1209 0.7651 5 6 2.2365 -1.1210 -0.7649 6 1 3.1717 -0.8756 -1.2681 7 6 1.3721 -2.1407 -1.4607 8 6 1.3677 -2.3986 -2.7808 9 6 0.4123 -3.4184 -2.9957 10 6 -0.1104 -3.7223 -1.7940 11 6 -1.1724 -4.7586 -1.5315 12 7 -0.5376 -6.0511 -1.2620 13 6 -1.2969 -7.1328 -0.9978 14 8 -2.5058 -7.0364 -0.9836 15 6 -0.6439 -8.4625 -0.7212 16 16 -1.9195 -9.7073 -0.4057 17 6 -0.9053 -11.1195 -0.1208 18 1 0.1700 -11.0313 -0.1719 19 6 -1.4880 -12.3454 0.1694 20 7 -0.7302 -13.4006 0.3818 21 14 -3.3477 -12.4981 0.2571 22 1 -3.8798 -12.8431 -1.0856 23 1 -3.7117 -13.5654 1.2232 24 1 -3.9298 -11.2069 0.7035 25 8 0.4753 -2.9457 -0.8679 26 1 -0.3634 -0.9261 0.4455 27 1 -0.3634 0.8488 0.5792 28 1 -0.3633 0.0772 -1.0248 29 1 1.6111 -1.8586 1.2681 30 1 3.1716 -0.8754 1.2685 31 1 1.9772 -1.9191 -3.5324 32 1 0.1488 -3.8643 -3.9434 33 1 -1.7670 -4.4590 -0.6685 34 1 -1.8184 -4.8462 -2.4051 35 1 0.4293 -6.1284 -1.2738 36 1 -0.0499 -8.7622 -1.5846 37 1 0.0027 -8.3751 0.1519 38 1 -1.1375 -14.2571 0.5850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603971370.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:59 Heat of formation + Delta-G solvation = -4.209865 kcal Electronic energy + Delta-G solvation = -20154.658129 eV Core-core repulsion = 16897.783340 eV Total energy + Delta-G solvation = -3256.874789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.94612 -39.28425 -38.16265 -34.93219 -33.25135 -32.43871 -31.10491 -29.42312 -28.63776 -26.06674 -25.55033 -22.65456 -22.20180 -21.08652 -20.58109 -20.03948 -18.06210 -17.04400 -16.73746 -16.25270 -16.09441 -15.49486 -15.35596 -14.95937 -14.50798 -13.82815 -13.64187 -13.57594 -13.44779 -13.24221 -13.09658 -12.82339 -12.79775 -12.37252 -12.19881 -11.90313 -11.82076 -11.27065 -11.01826 -11.00767 -10.62783 -10.47829 -10.14738 -9.86711 -9.64654 -9.10706 -8.99545 -8.54041 -8.49757 -6.92323 -6.28897 -4.00848 1.26715 2.21015 2.48928 2.81748 2.91806 3.32684 3.38332 3.40202 3.50677 3.69726 4.01464 4.23489 4.33132 4.35311 4.49552 4.72597 4.78069 4.83324 4.89966 5.10065 5.15038 5.20364 5.26975 5.36162 5.41314 5.48613 5.50957 5.59932 5.65891 5.73081 5.76591 5.77661 5.93751 6.00761 6.22592 6.37615 6.90456 7.52536 7.94182 8.40851 8.41987 9.17149 10.80338 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.032823 B = 0.002544 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.846375 B =11005.571444 C =11112.292478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.138 4.138 3 H 0.113 0.887 4 C -0.166 4.166 5 C -0.086 4.086 6 H 0.134 0.866 7 C 0.032 3.968 8 C -0.209 4.209 9 C -0.181 4.181 10 C -0.033 4.033 11 C 0.205 3.795 12 N -0.735 5.735 13 C 0.533 3.467 14 O -0.518 6.518 15 C -0.124 4.124 16 S -0.141 6.141 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 O -0.166 6.166 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.403 0.597 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.728 27.657 -3.948 28.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.156 4.156 3 H 0.131 0.869 4 C -0.203 4.203 5 C -0.104 4.104 6 H 0.152 0.848 7 C -0.018 4.018 8 C -0.228 4.228 9 C -0.201 4.201 10 C -0.083 4.083 11 C 0.082 3.918 12 N -0.391 5.391 13 C 0.320 3.680 14 O -0.392 6.392 15 C -0.274 4.274 16 S 0.086 5.914 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.114 4.114 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 O -0.062 6.062 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.237 0.763 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.629 27.606 -3.562 28.217 hybrid contribution 1.409 -0.498 -0.264 1.517 sum 6.038 27.108 -3.826 28.035 Atomic orbital electron populations 1.21397 0.92311 1.02487 1.02164 1.22516 0.96061 0.94166 1.02870 0.86895 1.23222 1.03153 1.01539 0.92362 1.20640 0.98803 0.96527 0.94397 0.84786 1.21326 0.93710 0.95197 0.91601 1.21491 1.03775 1.02128 0.95393 1.21676 0.99525 1.00447 0.98474 1.22290 1.00755 0.97919 0.87348 1.19527 0.90136 0.78764 1.03393 1.46064 1.10567 1.08021 1.74401 1.20310 0.87365 0.84869 0.75503 1.90710 1.13937 1.85006 1.49566 1.23276 1.03866 0.94787 1.05479 1.84778 1.10881 1.03335 1.92445 1.22316 0.95588 0.93401 1.55601 0.89361 1.24720 0.98844 0.94513 0.93274 1.69940 1.35762 1.00229 1.45757 0.86728 0.85284 0.80506 0.79294 1.19198 1.19943 1.15895 1.83960 1.43554 1.41221 1.37500 0.91955 0.91845 0.92129 0.87907 0.87869 0.83378 0.83082 0.89886 0.88328 0.76285 0.88340 0.88337 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 9.15 37.16 0.34 -0.58 16 2 C -0.14 -0.88 6.41 -90.62 -0.58 -1.46 16 3 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.17 -1.13 9.81 -26.73 -0.26 -1.39 16 5 C -0.09 -0.61 6.24 -91.77 -0.57 -1.18 16 6 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 7 C 0.03 0.31 5.89 -35.63 -0.21 0.10 16 8 C -0.21 -1.92 10.81 -39.70 -0.43 -2.35 16 9 C -0.18 -1.77 10.81 -39.70 -0.43 -2.20 16 10 C -0.03 -0.36 6.69 -35.63 -0.24 -0.59 16 11 C 0.21 2.38 6.20 -5.20 -0.03 2.35 16 12 N -0.73 -9.61 5.55 -61.48 -0.34 -9.95 16 13 C 0.53 9.40 7.85 -10.99 -0.09 9.31 16 14 O -0.52 -10.99 15.86 5.56 0.09 -10.90 16 15 C -0.12 -2.38 6.16 36.00 0.22 -2.16 16 16 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 17 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 18 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 20 N -0.88 -26.62 13.97 55.49 0.78 -25.84 16 21 Si 0.86 21.80 27.74 -169.99 -4.72 17.08 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.23 -5.96 6.74 56.52 0.38 -5.58 16 25 O -0.17 -1.85 9.63 5.71 0.05 -1.79 16 26 H 0.06 0.54 7.27 -51.93 -0.38 0.16 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.84 7.87 -51.93 -0.41 0.43 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.40 4.44 8.46 -40.82 -0.35 4.09 16 36 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 37 H 0.10 1.78 8.14 -51.92 -0.42 1.35 16 38 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 343.14 15.07 5.17 5.17 Total: -1.00 -33.70 343.14 -8.38 -42.08 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.36 Total: 1.90 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -2.06 Total: -12.19 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.43 Total: -35.80 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.14 Total: -12.69 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.72 Total: 17.08 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.70 -8.38 -42.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603971370.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.872 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds