Wall clock time and date at job start Tue Mar 31 2020 07:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 115.55915 * 2 1 4 4 C 1.52998 * 117.49921 * 145.68452 * 2 1 3 5 5 C 1.53000 * 60.00160 * 107.49213 * 4 2 1 6 6 H 1.08995 * 117.49734 * 107.51227 * 5 4 2 7 7 C 1.50698 * 117.49972 * 252.51152 * 5 4 2 8 8 C 1.34507 * 125.78843 * 188.60541 * 7 5 4 9 9 C 1.41385 * 106.84104 * 180.02562 * 8 7 5 10 10 C 1.34515 * 106.84000 * 0.02562 * 9 8 7 11 11 C 1.50694 * 125.78835 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47481 * 90.02161 * 11 10 9 13 13 C 1.34776 * 120.00264 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00138 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00232 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.47569 * 180.02562 * 15 13 12 17 17 C 1.76192 * 100.00448 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99820 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00246 * 180.02562 * 17 16 15 20 20 N 1.31636 * 120.00023 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99985 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46894 * 89.99833 * 21 19 17 23 23 H 1.48494 * 109.47176 * 210.00301 * 21 19 17 24 24 H 1.48506 * 109.47036 * 330.00180 * 21 19 17 25 25 O 1.34300 * 125.78747 * 8.63001 * 7 5 4 26 26 H 1.09005 * 109.47283 * 205.68806 * 1 2 3 27 27 H 1.08995 * 109.47475 * 325.69315 * 1 2 3 28 28 H 1.09004 * 109.46726 * 85.69427 * 1 2 3 29 29 H 1.09003 * 117.49548 * 0.02562 * 4 2 1 30 30 H 1.09004 * 117.51785 * 214.97832 * 4 2 1 31 31 H 1.07995 * 126.58208 * 0.05697 * 8 7 5 32 32 H 1.08001 * 126.58267 * 179.73335 * 9 8 7 33 33 H 1.09001 * 109.47124 * 210.02207 * 11 10 9 34 34 H 1.09002 * 109.47302 * 330.01924 * 11 10 9 35 35 H 0.97001 * 119.99910 * 359.97438 * 12 11 10 36 36 H 1.09001 * 109.47172 * 300.00716 * 15 13 12 37 37 H 1.09002 * 109.46886 * 60.00206 * 15 13 12 38 38 H 0.96996 * 119.99982 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2364 -1.1209 0.7651 5 6 2.2365 -1.1210 -0.7649 6 1 3.1717 -0.8756 -1.2681 7 6 1.3721 -2.1407 -1.4607 8 6 1.3677 -2.3986 -2.7808 9 6 0.4123 -3.4184 -2.9957 10 6 -0.1104 -3.7223 -1.7940 11 6 -1.1724 -4.7586 -1.5315 12 7 -0.5376 -6.0511 -1.2620 13 6 -1.2969 -7.1328 -0.9978 14 8 -2.5058 -7.0364 -0.9836 15 6 -0.6439 -8.4625 -0.7212 16 16 -1.9195 -9.7073 -0.4057 17 6 -0.9053 -11.1195 -0.1208 18 1 0.1700 -11.0313 -0.1719 19 6 -1.4880 -12.3454 0.1694 20 7 -0.7302 -13.4006 0.3818 21 14 -3.3477 -12.4981 0.2571 22 1 -3.8798 -12.8431 -1.0856 23 1 -3.7117 -13.5654 1.2232 24 1 -3.9298 -11.2069 0.7035 25 8 0.4753 -2.9457 -0.8679 26 1 -0.3634 -0.9261 0.4455 27 1 -0.3634 0.8488 0.5792 28 1 -0.3633 0.0772 -1.0248 29 1 1.6111 -1.8586 1.2681 30 1 3.1716 -0.8754 1.2685 31 1 1.9772 -1.9191 -3.5324 32 1 0.1488 -3.8643 -3.9434 33 1 -1.7670 -4.4590 -0.6685 34 1 -1.8184 -4.8462 -2.4051 35 1 0.4293 -6.1284 -1.2738 36 1 -0.0499 -8.7622 -1.5846 37 1 0.0027 -8.3751 0.1519 38 1 -1.1375 -14.2571 0.5850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603971370.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:58 Heat of formation + Delta-G solvation = -25.397856 kcal Electronic energy + Delta-G solvation = -20155.576909 eV Core-core repulsion = 16897.783340 eV Total energy + Delta-G solvation = -3257.793569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.70085 -40.66968 -38.70864 -36.13299 -34.67444 -34.02480 -32.24033 -30.49534 -29.38722 -27.88713 -26.89642 -23.31627 -22.91961 -21.93429 -21.70044 -20.71917 -19.96970 -18.25210 -17.87927 -17.13538 -17.09603 -16.89022 -16.74617 -16.29313 -15.64583 -15.41948 -14.94581 -14.82412 -14.49460 -14.18334 -14.06781 -13.80617 -13.62295 -13.35850 -13.33863 -13.07212 -12.99886 -12.74063 -12.66149 -12.38743 -11.87365 -11.57659 -11.20840 -11.17187 -11.00491 -10.80406 -10.55044 -10.29974 -9.27193 -9.00292 -8.51745 -6.22829 0.47056 0.99017 1.31864 1.42717 1.49219 1.50021 1.61453 1.77605 2.24571 2.34527 2.71523 2.86442 2.86773 3.36708 3.63437 3.75499 3.82058 3.92103 4.08175 4.13263 4.22440 4.37881 4.41540 4.45320 4.49474 4.71596 4.81724 4.83712 4.86593 4.96859 5.07633 5.09819 5.13072 5.20391 5.37231 5.53998 5.70490 6.11321 6.15682 6.33392 6.93203 7.07239 8.60696 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.032823 B = 0.002544 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.846375 B =11005.571444 C =11112.292478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.132 4.132 3 H 0.137 0.863 4 C -0.170 4.170 5 C -0.093 4.093 6 H 0.158 0.842 7 C 0.027 3.973 8 C -0.216 4.216 9 C -0.175 4.175 10 C -0.052 4.052 11 C 0.209 3.791 12 N -0.712 5.712 13 C 0.540 3.460 14 O -0.557 6.557 15 C -0.112 4.112 16 S -0.172 6.172 17 C -0.530 4.530 18 H 0.062 0.938 19 C 0.044 3.956 20 N -0.917 5.917 21 Si 0.915 3.085 22 H -0.261 1.261 23 H -0.259 1.259 24 H -0.236 1.236 25 O -0.183 6.183 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.170 0.830 32 H 0.166 0.834 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.415 0.585 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.305 29.775 -4.600 31.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.150 4.150 3 H 0.154 0.846 4 C -0.207 4.207 5 C -0.111 4.111 6 H 0.175 0.825 7 C -0.023 4.023 8 C -0.235 4.235 9 C -0.195 4.195 10 C -0.101 4.101 11 C 0.086 3.914 12 N -0.367 5.367 13 C 0.326 3.674 14 O -0.435 6.435 15 C -0.263 4.263 16 S 0.055 5.945 17 C -0.677 4.677 18 H 0.080 0.920 19 C -0.161 4.161 20 N -0.555 5.555 21 Si 0.737 3.263 22 H -0.186 1.186 23 H -0.184 1.184 24 H -0.160 1.160 25 O -0.080 6.080 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.140 0.860 31 H 0.188 0.812 32 H 0.183 0.817 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.252 0.748 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.249 29.750 -4.222 30.503 hybrid contribution 1.375 -0.996 -0.088 1.700 sum 6.624 28.754 -4.311 29.820 Atomic orbital electron populations 1.21393 0.93325 1.01986 1.01759 1.22616 0.95333 0.95007 1.02058 0.84552 1.23244 1.03764 1.01375 0.92275 1.20907 0.99396 0.96236 0.94546 0.82473 1.21899 0.93189 0.95050 0.92185 1.21806 1.03902 1.02057 0.95763 1.21945 0.98915 1.00093 0.98583 1.22092 1.01607 0.98637 0.87804 1.19529 0.90484 0.77982 1.03412 1.45851 1.10980 1.07542 1.72305 1.19924 0.86820 0.85118 0.75530 1.90702 1.15451 1.85523 1.51824 1.23263 1.02144 0.93923 1.06921 1.84678 1.13257 1.03866 1.92697 1.22464 0.94927 0.95143 1.55193 0.91984 1.25588 1.03244 0.94287 0.92985 1.70019 1.37748 1.00954 1.46805 0.85851 0.79946 0.80699 0.79787 1.18604 1.18373 1.15973 1.83951 1.44176 1.41742 1.38123 0.93920 0.90619 0.92749 0.89908 0.85984 0.81239 0.81687 0.90592 0.87569 0.74815 0.86610 0.86896 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 9.15 71.98 0.66 -1.07 16 2 C -0.13 -1.42 6.41 -10.79 -0.07 -1.49 16 3 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.17 -2.04 9.81 30.59 0.30 -1.74 16 5 C -0.09 -1.13 6.24 -11.54 -0.07 -1.20 16 6 H 0.16 1.13 8.14 -2.39 -0.02 1.12 16 7 C 0.03 0.48 5.89 24.83 0.15 0.62 16 8 C -0.22 -3.50 10.81 22.19 0.24 -3.26 16 9 C -0.18 -3.09 10.81 22.19 0.24 -2.85 16 10 C -0.05 -1.05 6.69 24.83 0.17 -0.89 16 11 C 0.21 4.65 6.20 85.63 0.53 5.18 16 12 N -0.71 -17.62 5.55 -466.80 -2.59 -20.21 16 13 C 0.54 18.47 7.85 87.66 0.69 19.16 16 14 O -0.56 -23.36 15.86 -3.03 -0.05 -23.41 16 15 C -0.11 -4.20 6.16 71.23 0.44 -3.76 16 16 S -0.17 -8.65 18.55 -56.49 -1.05 -9.70 16 17 C -0.53 -30.90 10.04 67.95 0.68 -30.22 16 18 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 19 C 0.04 2.61 5.50 84.86 0.47 3.08 16 20 N -0.92 -56.04 13.97 21.65 0.30 -55.73 16 21 Si 0.92 45.02 27.74 68.60 1.90 46.92 16 22 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 25 O -0.18 -3.94 9.63 -2.50 -0.02 -3.97 16 26 H 0.04 0.74 7.27 -2.38 -0.02 0.72 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.08 1.34 7.87 -2.39 -0.02 1.32 16 30 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.42 8.36 8.46 -92.71 -0.78 7.58 16 36 H 0.12 3.97 8.14 -2.40 -0.02 3.95 16 37 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 38 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -72.80 343.14 3.16 -69.65 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.25 Total: 14.88 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 4.42 Total: -18.43 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -2.29 Total: -75.95 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.07 Total: -27.38 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.92 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.05 Total: -9.70 kcal Total: -72.80 3.16 -69.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603971370.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.248 kcal (2) G-P(sol) polarization free energy of solvation -72.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds