Wall clock time and date at job start Tue Mar 31 2020 07:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 115.54775 * 2 1 4 4 C 1.53070 * 117.53395 * 214.27964 * 2 1 3 5 5 C 1.52998 * 59.98745 * 252.53562 * 4 2 1 6 6 H 1.09000 * 117.49930 * 252.50685 * 5 4 2 7 7 C 1.50697 * 117.49875 * 107.49820 * 5 4 2 8 8 C 1.34515 * 125.78857 * 171.25702 * 7 5 4 9 9 C 1.41381 * 106.84225 * 179.79517 * 8 7 5 10 10 C 1.34511 * 106.83990 * 0.37272 * 9 8 7 11 11 C 1.50703 * 125.79059 * 179.89057 * 10 9 8 12 12 N 1.46505 * 109.47064 * 89.68701 * 11 10 9 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00597 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99622 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.47156 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00151 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99845 * 359.97438 * 17 16 15 19 19 C 1.38796 * 120.00054 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00100 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47251 * 59.99888 * 21 19 17 23 23 H 1.48499 * 109.47003 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47069 * 299.99979 * 21 19 17 25 25 O 1.34302 * 125.79356 * 351.28193 * 7 5 4 26 26 H 1.08994 * 109.47409 * 274.33400 * 1 2 3 27 27 H 1.09006 * 109.46750 * 34.33478 * 1 2 3 28 28 H 1.09005 * 109.46744 * 154.32879 * 1 2 3 29 29 H 1.09005 * 117.49516 * 145.04550 * 4 2 1 30 30 H 1.08998 * 117.51407 * 0.02562 * 4 2 1 31 31 H 1.08002 * 126.57711 * 0.03679 * 8 7 5 32 32 H 1.07999 * 126.58026 * 180.22916 * 9 8 7 33 33 H 1.09002 * 109.47152 * 329.68784 * 11 10 9 34 34 H 1.09001 * 109.46980 * 209.68885 * 11 10 9 35 35 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 36 36 H 1.09001 * 109.47380 * 300.00190 * 15 13 12 37 37 H 1.09002 * 109.47060 * 60.00278 * 15 13 12 38 38 H 0.96999 * 120.00126 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2377 -1.1216 -0.7645 5 6 2.2365 -1.1207 0.7655 6 1 3.1711 -0.8744 1.2694 7 6 1.3719 -2.1404 1.4612 8 6 1.3683 -2.3993 2.7811 9 6 0.4094 -3.4157 2.9966 10 6 -0.1096 -3.7228 1.7943 11 6 -1.1716 -4.7594 1.5315 12 7 -2.4950 -4.1390 1.6317 13 6 -3.6032 -4.8798 1.4332 14 8 -3.5050 -6.0601 1.1721 15 6 -4.9645 -4.2418 1.5369 16 16 -6.2399 -5.4867 1.2212 17 6 -7.6858 -4.4958 1.4006 18 1 -7.5951 -3.4462 1.6385 19 6 -8.9415 -5.0643 1.2373 20 7 -9.0521 -6.3438 0.9489 21 14 -10.4743 -4.0139 1.4283 22 1 -10.4469 -2.9126 0.4326 23 1 -11.6797 -4.8525 1.2067 24 1 -10.5149 -3.4419 2.7981 25 8 0.4747 -2.9450 0.8684 26 1 -0.3634 0.0777 1.0246 27 1 -0.3633 0.8487 -0.5797 28 1 -0.3633 -0.9263 -0.4452 29 1 3.1730 -0.8756 -1.2672 30 1 1.6132 -1.8595 -1.2680 31 1 1.9779 -1.9198 3.5328 32 1 0.1461 -3.8617 3.9443 33 1 -1.0886 -5.5592 2.2674 34 1 -1.0379 -5.1709 0.5311 35 1 -2.5734 -3.1950 1.8402 36 1 -5.0981 -3.8310 2.5376 37 1 -5.0476 -3.4414 0.8016 38 1 -9.9296 -6.7411 0.8344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603971378.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:01 Heat of formation + Delta-G solvation = -4.406792 kcal Electronic energy + Delta-G solvation = -20235.063116 eV Core-core repulsion = 16978.179787 eV Total energy + Delta-G solvation = -3256.883329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.91005 -39.16128 -38.12367 -34.83802 -33.21258 -32.42809 -31.01391 -29.32294 -28.56537 -26.01413 -25.39419 -22.61894 -22.16569 -21.04743 -20.46722 -20.00224 -18.00832 -16.97845 -16.70744 -16.30814 -15.77354 -15.57604 -15.26463 -14.80207 -14.43181 -13.91404 -13.55166 -13.52009 -13.39905 -13.12723 -13.02328 -12.77725 -12.59611 -12.30736 -12.15195 -11.84387 -11.72236 -11.04705 -11.03564 -10.97442 -10.77530 -10.44142 -10.10575 -9.83239 -9.53925 -9.07104 -8.98873 -8.48862 -8.24539 -6.50316 -6.21449 -3.92283 1.30626 2.26322 2.52041 3.04688 3.09738 3.23879 3.28271 3.33764 3.42679 3.77610 4.04953 4.20562 4.26661 4.39291 4.52790 4.81142 4.87330 4.94507 5.09962 5.13613 5.22435 5.29444 5.38641 5.45224 5.47643 5.52797 5.64227 5.70071 5.70509 5.77719 5.82171 5.88230 5.99602 6.13328 6.26201 6.47103 6.94184 7.59312 7.63150 8.35189 8.54020 9.23715 10.85948 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.002714 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.752485 B =10313.805312 C =10958.258462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.137 4.137 3 H 0.113 0.887 4 C -0.167 4.167 5 C -0.086 4.086 6 H 0.134 0.866 7 C 0.031 3.969 8 C -0.209 4.209 9 C -0.183 4.183 10 C -0.031 4.031 11 C 0.204 3.796 12 N -0.737 5.737 13 C 0.534 3.466 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 O -0.166 6.166 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.660 12.921 1.239 26.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.155 4.155 3 H 0.131 0.869 4 C -0.204 4.204 5 C -0.104 4.104 6 H 0.151 0.849 7 C -0.019 4.019 8 C -0.228 4.228 9 C -0.203 4.203 10 C -0.081 4.081 11 C 0.081 3.919 12 N -0.393 5.393 13 C 0.321 3.679 14 O -0.389 6.389 15 C -0.303 4.303 16 S 0.168 5.832 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 O -0.062 6.062 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.235 0.765 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.622 10.752 0.445 25.958 hybrid contribution -0.940 2.509 0.833 2.806 sum 22.682 13.261 1.278 26.305 Atomic orbital electron populations 1.21404 0.92178 1.02595 1.02255 1.22532 0.96143 0.94104 1.02710 0.86906 1.23225 1.03105 1.01662 0.92362 1.20635 0.98813 0.96606 0.94315 0.84856 1.21320 0.93969 0.95057 0.91599 1.21488 1.03769 1.02169 0.95376 1.21670 0.99735 1.00527 0.98332 1.22327 1.00403 0.98053 0.87341 1.19534 0.77879 0.90526 1.03968 1.46101 1.04619 1.13623 1.74911 1.20340 0.85269 0.86800 0.75522 1.90714 1.86776 1.15529 1.45929 1.23532 0.96015 1.05616 1.05171 1.85394 0.94726 1.10846 1.92258 1.22828 0.91972 0.97667 1.55986 0.90952 1.24991 0.98714 0.95325 0.94538 1.70006 1.24761 1.10801 1.44737 0.86219 0.80741 0.79698 0.78815 1.19930 1.20806 1.19938 1.83962 1.43615 1.41092 1.37567 0.92067 0.91772 0.91912 0.87942 0.87930 0.83418 0.83096 0.88348 0.89902 0.76501 0.89080 0.89120 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 9.15 37.16 0.34 -0.69 16 2 C -0.14 -0.94 6.41 -90.58 -0.58 -1.52 16 3 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 4 C -0.17 -1.16 9.82 -26.70 -0.26 -1.42 16 5 C -0.09 -0.63 6.24 -91.77 -0.57 -1.20 16 6 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 7 C 0.03 0.31 5.89 -35.63 -0.21 0.10 16 8 C -0.21 -1.98 10.81 -39.70 -0.43 -2.41 16 9 C -0.18 -1.86 10.81 -39.70 -0.43 -2.28 16 10 C -0.03 -0.35 6.69 -35.62 -0.24 -0.59 16 11 C 0.20 2.51 6.20 -5.19 -0.03 2.48 16 12 N -0.74 -10.12 5.55 -61.47 -0.34 -10.46 16 13 C 0.53 9.93 7.85 -10.99 -0.09 9.85 16 14 O -0.52 -11.57 15.86 5.56 0.09 -11.49 16 15 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 16 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 17 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 21 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 O -0.17 -1.91 9.63 5.71 0.05 -1.86 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.60 7.27 -51.93 -0.38 0.22 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.85 7.88 -51.93 -0.41 0.44 16 31 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.40 4.62 8.46 -40.82 -0.35 4.27 16 36 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 37 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 38 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -33.97 345.84 -8.89 -42.86 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.33 Total: 2.14 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -2.08 Total: -13.53 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.39 Total: -35.92 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.14 Total: -13.34 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.97 -8.89 -42.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603971378.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.454 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds