Wall clock time and date at job start Tue Mar 31 2020 07:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 115.54775 * 2 1 4 4 C 1.53070 * 117.53395 * 214.27964 * 2 1 3 5 5 C 1.52998 * 59.98745 * 252.53562 * 4 2 1 6 6 H 1.09000 * 117.49930 * 252.50685 * 5 4 2 7 7 C 1.50697 * 117.49875 * 107.49820 * 5 4 2 8 8 C 1.34515 * 125.78857 * 171.25702 * 7 5 4 9 9 C 1.41381 * 106.84225 * 179.79517 * 8 7 5 10 10 C 1.34511 * 106.83990 * 0.37272 * 9 8 7 11 11 C 1.50703 * 125.79059 * 179.89057 * 10 9 8 12 12 N 1.46505 * 109.47064 * 89.68701 * 11 10 9 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00597 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99622 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.47156 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00151 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99845 * 359.97438 * 17 16 15 19 19 C 1.38796 * 120.00054 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00100 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47251 * 59.99888 * 21 19 17 23 23 H 1.48499 * 109.47003 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47069 * 299.99979 * 21 19 17 25 25 O 1.34302 * 125.79356 * 351.28193 * 7 5 4 26 26 H 1.08994 * 109.47409 * 274.33400 * 1 2 3 27 27 H 1.09006 * 109.46750 * 34.33478 * 1 2 3 28 28 H 1.09005 * 109.46744 * 154.32879 * 1 2 3 29 29 H 1.09005 * 117.49516 * 145.04550 * 4 2 1 30 30 H 1.08998 * 117.51407 * 0.02562 * 4 2 1 31 31 H 1.08002 * 126.57711 * 0.03679 * 8 7 5 32 32 H 1.07999 * 126.58026 * 180.22916 * 9 8 7 33 33 H 1.09002 * 109.47152 * 329.68784 * 11 10 9 34 34 H 1.09001 * 109.46980 * 209.68885 * 11 10 9 35 35 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 36 36 H 1.09001 * 109.47380 * 300.00190 * 15 13 12 37 37 H 1.09002 * 109.47060 * 60.00278 * 15 13 12 38 38 H 0.96999 * 120.00126 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2377 -1.1216 -0.7645 5 6 2.2365 -1.1207 0.7655 6 1 3.1711 -0.8744 1.2694 7 6 1.3719 -2.1404 1.4612 8 6 1.3683 -2.3993 2.7811 9 6 0.4094 -3.4157 2.9966 10 6 -0.1096 -3.7228 1.7943 11 6 -1.1716 -4.7594 1.5315 12 7 -2.4950 -4.1390 1.6317 13 6 -3.6032 -4.8798 1.4332 14 8 -3.5050 -6.0601 1.1721 15 6 -4.9645 -4.2418 1.5369 16 16 -6.2399 -5.4867 1.2212 17 6 -7.6858 -4.4958 1.4006 18 1 -7.5951 -3.4462 1.6385 19 6 -8.9415 -5.0643 1.2373 20 7 -9.0521 -6.3438 0.9489 21 14 -10.4743 -4.0139 1.4283 22 1 -10.4469 -2.9126 0.4326 23 1 -11.6797 -4.8525 1.2067 24 1 -10.5149 -3.4419 2.7981 25 8 0.4747 -2.9450 0.8684 26 1 -0.3634 0.0777 1.0246 27 1 -0.3633 0.8487 -0.5797 28 1 -0.3633 -0.9263 -0.4452 29 1 3.1730 -0.8756 -1.2672 30 1 1.6132 -1.8595 -1.2680 31 1 1.9779 -1.9198 3.5328 32 1 0.1461 -3.8617 3.9443 33 1 -1.0886 -5.5592 2.2674 34 1 -1.0379 -5.1709 0.5311 35 1 -2.5734 -3.1950 1.8402 36 1 -5.0981 -3.8310 2.5376 37 1 -5.0476 -3.4414 0.8016 38 1 -9.9296 -6.7411 0.8344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603971378.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:01 Heat of formation + Delta-G solvation = -25.729132 kcal Electronic energy + Delta-G solvation = -20235.987722 eV Core-core repulsion = 16978.179787 eV Total energy + Delta-G solvation = -3257.807935 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.69952 -40.62571 -38.69825 -36.11174 -34.58567 -34.02151 -32.19967 -30.44643 -29.38410 -27.71892 -26.84580 -23.30725 -22.91557 -21.89595 -21.69749 -20.71407 -19.91190 -18.21379 -17.81333 -17.25400 -16.87962 -16.75556 -16.63963 -16.39720 -15.78233 -15.35693 -14.84115 -14.50771 -14.43137 -14.17978 -14.04452 -13.79764 -13.57970 -13.33258 -13.17408 -13.06169 -12.86422 -12.73020 -12.62879 -12.38328 -11.75959 -11.56224 -11.17041 -11.12970 -10.99554 -10.79685 -10.29412 -10.27787 -9.26853 -8.67224 -8.34624 -6.12987 0.48042 1.25500 1.43545 1.44202 1.52118 1.54225 1.60654 1.77349 2.27090 2.39317 2.87296 2.99448 3.30884 3.37408 3.64335 3.76213 3.91264 3.93233 4.08449 4.14413 4.28356 4.38534 4.41970 4.48817 4.51032 4.71760 4.82040 4.84318 4.86667 4.97103 5.07838 5.10383 5.13954 5.23052 5.37650 5.41660 5.54351 6.15997 6.19621 6.37343 7.06505 7.12782 8.74387 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.002714 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.752485 B =10313.805312 C =10958.258462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.133 4.133 3 H 0.137 0.863 4 C -0.169 4.169 5 C -0.092 4.092 6 H 0.159 0.841 7 C 0.027 3.973 8 C -0.216 4.216 9 C -0.176 4.176 10 C -0.051 4.051 11 C 0.208 3.792 12 N -0.712 5.712 13 C 0.539 3.461 14 O -0.560 6.560 15 C -0.130 4.130 16 S -0.148 6.148 17 C -0.548 4.548 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.262 1.262 25 O -0.183 6.183 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.041 0.959 29 H 0.124 0.876 30 H 0.082 0.918 31 H 0.171 0.829 32 H 0.165 0.835 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.877 15.791 2.097 29.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.151 4.151 3 H 0.154 0.846 4 C -0.206 4.206 5 C -0.109 4.109 6 H 0.177 0.823 7 C -0.023 4.023 8 C -0.235 4.235 9 C -0.196 4.196 10 C -0.101 4.101 11 C 0.085 3.915 12 N -0.367 5.367 13 C 0.325 3.675 14 O -0.438 6.438 15 C -0.281 4.281 16 S 0.079 5.921 17 C -0.696 4.696 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.186 1.186 25 O -0.080 6.080 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.142 0.858 30 H 0.101 0.899 31 H 0.189 0.811 32 H 0.183 0.817 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.251 0.749 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 24.879 13.666 1.315 28.416 hybrid contribution -1.150 1.679 0.565 2.112 sum 23.729 15.345 1.880 28.321 Atomic orbital electron populations 1.21398 0.93477 1.01917 1.01777 1.22617 0.95205 0.95057 1.02232 0.84559 1.23256 1.03755 1.01289 0.92258 1.20910 0.99383 0.96114 0.94531 0.82337 1.21920 0.93440 0.94805 0.92184 1.21807 1.03856 1.02025 0.95769 1.21938 0.99145 1.00115 0.98364 1.22070 1.01205 0.98932 0.87862 1.19512 0.77184 0.91111 1.03705 1.45850 1.04154 1.13921 1.72768 1.20046 0.85772 0.86268 0.75443 1.90704 1.87296 1.17390 1.48405 1.23369 0.94398 1.03494 1.06808 1.85559 0.98075 1.15560 1.92859 1.23177 0.92386 0.98065 1.55944 0.89893 1.26132 1.02528 0.96681 0.93802 1.70174 1.25703 1.12963 1.45921 0.85001 0.75769 0.77786 0.79427 1.18677 1.20376 1.18634 1.83951 1.44286 1.41599 1.38168 0.92687 0.90825 0.93959 0.85815 0.89943 0.81142 0.81737 0.87784 0.90808 0.74889 0.86974 0.87280 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.15 71.98 0.66 -1.28 16 2 C -0.13 -1.53 6.41 -10.77 -0.07 -1.60 16 3 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.17 -2.05 9.82 30.62 0.30 -1.75 16 5 C -0.09 -1.13 6.24 -11.54 -0.07 -1.20 16 6 H 0.16 1.13 8.14 -2.39 -0.02 1.11 16 7 C 0.03 0.49 5.89 24.83 0.15 0.63 16 8 C -0.22 -3.59 10.81 22.19 0.24 -3.35 16 9 C -0.18 -3.25 10.81 22.19 0.24 -3.01 16 10 C -0.05 -1.10 6.69 24.83 0.17 -0.94 16 11 C 0.21 5.04 6.20 85.63 0.53 5.57 16 12 N -0.71 -18.97 5.55 -466.78 -2.59 -21.56 16 13 C 0.54 19.97 7.85 87.66 0.69 20.66 16 14 O -0.56 -25.78 15.86 -3.03 -0.05 -25.82 16 15 C -0.13 -5.15 6.16 71.24 0.44 -4.72 16 16 S -0.15 -8.22 20.57 -56.49 -1.16 -9.38 16 17 C -0.55 -31.35 9.50 67.95 0.65 -30.70 16 18 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.76 5.49 84.86 0.47 1.23 16 20 N -0.91 -56.12 13.22 21.65 0.29 -55.83 16 21 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 25 O -0.18 -4.10 9.63 -2.48 -0.02 -4.13 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.04 0.80 7.27 -2.38 -0.02 0.78 16 29 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.08 1.35 7.88 -2.39 -0.02 1.33 16 31 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 32 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 33 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.41 8.89 8.46 -92.71 -0.78 8.10 16 36 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 37 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 38 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -75.39 345.84 3.15 -72.23 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.28 Total: 19.32 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 4.38 Total: -20.46 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -2.30 Total: -77.39 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.07 Total: -29.95 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.38 kcal Total: -75.39 3.15 -72.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603971378.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.503 kcal (2) G-P(sol) polarization free energy of solvation -75.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds