Wall clock time and date at job start Tue Mar 31 2020 07:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 115.56466 * 2 1 4 4 C 1.52999 * 117.49663 * 214.31917 * 2 1 3 5 5 C 1.53000 * 117.50006 * 145.69474 * 2 1 3 6 6 H 1.08997 * 117.51499 * 0.02562 * 5 2 1 7 7 C 1.50695 * 117.50103 * 214.97809 * 5 2 1 8 8 C 1.34510 * 125.79371 * 119.98154 * 7 5 2 9 9 C 1.41380 * 106.84572 * 179.75438 * 8 7 5 10 10 C 1.34510 * 106.83678 * 0.37258 * 9 8 7 11 11 C 1.50706 * 125.79032 * 179.88883 * 10 9 8 12 12 N 1.46500 * 109.47134 * 89.68884 * 11 10 9 13 13 C 1.34772 * 120.00383 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99720 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.00401 * 180.02562 * 13 12 11 16 16 S 1.81005 * 109.47415 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99931 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00293 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99843 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99846 * 359.71985 * 19 17 16 21 21 Si 1.86795 * 120.00110 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47071 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47211 * 119.99794 * 21 19 17 24 24 H 1.48493 * 109.47327 * 239.99662 * 21 19 17 25 25 O 1.34302 * 108.42522 * 359.62627 * 10 9 8 26 26 H 1.08995 * 109.46961 * 274.30914 * 1 2 3 27 27 H 1.09000 * 109.47272 * 34.30746 * 1 2 3 28 28 H 1.08997 * 109.47038 * 154.30294 * 1 2 3 29 29 H 1.09003 * 117.50188 * 145.02162 * 4 2 1 30 30 H 1.08993 * 117.52146 * 359.97438 * 4 2 1 31 31 H 1.08008 * 126.57615 * 0.02562 * 8 7 5 32 32 H 1.07997 * 126.57860 * 180.24325 * 9 8 7 33 33 H 1.09002 * 109.46838 * 329.69321 * 11 10 9 34 34 H 1.08991 * 109.47540 * 209.69213 * 11 10 9 35 35 H 0.97003 * 119.99680 * 0.02562 * 12 11 10 36 36 H 1.09002 * 109.47362 * 59.99907 * 15 13 12 37 37 H 1.09005 * 109.46865 * 300.00021 * 15 13 12 38 38 H 0.97000 * 120.00210 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1209 -0.7652 5 6 2.2365 -1.1210 0.7649 6 1 1.6116 -1.8590 1.2678 7 6 3.5293 -0.7813 1.4607 8 6 3.7640 -0.8885 2.7808 9 6 5.0982 -0.4727 2.9949 10 6 5.5964 -0.1284 1.7938 11 6 6.9904 0.3803 1.5309 12 7 7.8809 -0.7517 1.2627 13 6 9.1849 -0.5357 0.9994 14 8 9.6213 0.5958 0.9849 15 6 10.1008 -1.7000 0.7230 16 16 11.7751 -1.0891 0.4073 17 6 12.6092 -2.6151 0.1242 18 1 12.0646 -3.5462 0.1769 19 6 13.9667 -2.6206 -0.1657 20 7 14.6296 -1.4854 -0.2344 21 14 14.8509 -4.2382 -0.4666 22 1 13.8871 -5.3605 -0.3383 23 1 15.4322 -4.2379 -1.8332 24 1 15.9367 -4.4022 0.5330 25 8 4.6428 -0.3204 0.8678 26 1 -0.3633 0.0772 1.0247 27 1 -0.3634 0.8489 -0.5792 28 1 -0.3633 -0.9260 -0.4456 29 1 3.1715 -0.8751 -1.2685 30 1 1.6115 -1.8587 -1.2683 31 1 3.0681 -1.2311 3.5325 32 1 5.6170 -0.4364 3.9414 33 1 7.3489 0.9256 2.4040 34 1 6.9778 1.0451 0.6673 35 1 7.5319 -1.6567 1.2747 36 1 9.7425 -2.2448 -0.1505 37 1 10.1131 -2.3654 1.5863 38 1 15.5781 -1.4892 -0.4373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603971380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:04 Heat of formation + Delta-G solvation = -5.624172 kcal Electronic energy + Delta-G solvation = -19851.420109 eV Core-core repulsion = 16594.483991 eV Total energy + Delta-G solvation = -3256.936118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.90322 -39.15984 -38.14727 -34.85124 -33.22312 -32.42786 -31.14939 -29.56767 -28.40298 -25.93005 -25.38505 -22.61985 -22.03452 -21.17318 -20.46735 -20.18189 -18.05468 -17.29245 -16.57935 -16.27808 -15.77143 -15.36558 -14.94172 -14.80353 -14.62498 -13.98822 -13.91357 -13.53714 -13.47948 -13.11442 -13.05135 -12.69054 -12.58381 -12.31519 -12.23791 -11.91424 -11.74587 -11.06885 -11.03075 -11.01999 -10.76248 -10.52296 -10.12155 -9.81301 -9.53650 -9.08451 -8.99145 -8.49436 -8.23640 -6.50230 -6.21846 -3.92347 1.29064 2.23809 2.51652 3.04711 3.09819 3.21820 3.29252 3.35252 3.40202 3.77678 3.99463 4.20210 4.30391 4.38582 4.47049 4.80062 4.82615 4.87534 5.09974 5.13403 5.16602 5.26302 5.29719 5.34573 5.44450 5.51275 5.57117 5.65450 5.70048 5.76468 5.82500 5.83703 5.88546 6.13735 6.24918 6.47168 6.92467 7.59947 7.63299 8.35581 8.54043 9.23656 10.85637 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.030493 B = 0.002359 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.037048 B =11864.261464 C =12196.167445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.140 4.140 3 H 0.108 0.892 4 C -0.165 4.165 5 C -0.083 4.083 6 H 0.134 0.866 7 C 0.026 3.974 8 C -0.207 4.207 9 C -0.183 4.183 10 C -0.030 4.030 11 C 0.204 3.796 12 N -0.737 5.737 13 C 0.534 3.466 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 O -0.168 6.168 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.193 0.025 3.608 28.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.158 4.158 3 H 0.126 0.874 4 C -0.202 4.202 5 C -0.101 4.101 6 H 0.152 0.848 7 C -0.025 4.025 8 C -0.226 4.226 9 C -0.203 4.203 10 C -0.080 4.080 11 C 0.081 3.919 12 N -0.393 5.393 13 C 0.321 3.679 14 O -0.390 6.390 15 C -0.303 4.303 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.092 0.908 19 C -0.137 4.137 20 N -0.503 5.503 21 Si 0.746 3.254 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 O -0.064 6.064 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.235 0.765 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -27.244 2.085 3.231 27.514 hybrid contribution -0.108 -2.851 0.134 2.856 sum -27.352 -0.766 3.365 27.569 Atomic orbital electron populations 1.21390 0.92052 1.02382 1.02213 1.22525 0.95553 0.94799 1.02918 0.87422 1.23213 1.03273 1.01303 0.92377 1.20606 0.91870 1.03224 0.94359 0.84789 1.21409 0.87199 1.02222 0.91669 1.21496 0.97467 1.08272 0.95366 1.21682 0.95433 1.04634 0.98538 1.22340 0.91494 1.06877 0.87312 1.19535 0.79952 0.88985 1.03433 1.46106 1.08863 1.09612 1.74708 1.20341 0.81263 0.90907 0.75403 1.90713 1.75006 1.23919 1.49335 1.23531 1.02777 0.99269 1.04745 1.85396 0.94249 1.11941 1.91714 1.22911 0.96645 0.93081 1.55669 0.90840 1.25003 0.96434 0.97506 0.94712 1.70029 1.09244 1.25385 1.45615 0.86105 0.79280 0.82002 0.78039 1.19618 1.20560 1.20569 1.83950 1.19650 1.65232 1.37579 0.91888 0.91677 0.92223 0.87957 0.87805 0.83342 0.83019 0.88311 0.89889 0.76457 0.89098 0.89062 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 10.19 37.16 0.38 -0.21 16 2 C -0.14 -0.94 6.11 -90.62 -0.55 -1.50 16 3 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.16 -1.17 9.81 -26.73 -0.26 -1.43 16 5 C -0.08 -0.62 5.96 -91.77 -0.55 -1.16 16 6 H 0.13 0.76 8.14 -51.93 -0.42 0.33 16 7 C 0.03 0.26 6.80 -35.63 -0.24 0.02 16 8 C -0.21 -1.99 10.81 -39.70 -0.43 -2.42 16 9 C -0.18 -1.88 10.81 -39.70 -0.43 -2.31 16 10 C -0.03 -0.34 6.69 -35.62 -0.24 -0.58 16 11 C 0.20 2.54 6.20 -5.19 -0.03 2.51 16 12 N -0.74 -10.27 5.55 -61.48 -0.34 -10.61 16 13 C 0.53 10.01 7.85 -10.99 -0.09 9.92 16 14 O -0.52 -11.63 15.86 5.56 0.09 -11.54 16 15 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 17 C -0.53 -15.28 9.50 30.94 0.29 -14.98 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 21 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 O -0.17 -2.00 10.36 5.69 0.06 -1.94 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.25 7.90 -51.93 -0.41 -0.16 16 29 H 0.10 0.86 7.96 -51.93 -0.41 0.45 16 30 H 0.10 0.57 8.05 -51.93 -0.42 0.15 16 31 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.40 4.71 8.46 -40.82 -0.35 4.37 16 36 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 37 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 348.55 15.07 5.25 5.25 Total: -1.00 -34.18 348.55 -8.82 -43.00 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.36 Total: 1.73 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -2.02 Total: -13.04 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.39 Total: -36.09 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.15 Total: -13.48 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.18 -8.82 -43.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603971380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.380 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds