Wall clock time and date at job start Tue Mar 31 2020 07:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 115.56466 * 2 1 4 4 C 1.52999 * 117.49663 * 214.31917 * 2 1 3 5 5 C 1.53000 * 117.50006 * 145.69474 * 2 1 3 6 6 H 1.08997 * 117.51499 * 0.02562 * 5 2 1 7 7 C 1.50695 * 117.50103 * 214.97809 * 5 2 1 8 8 C 1.34510 * 125.79371 * 119.98154 * 7 5 2 9 9 C 1.41380 * 106.84572 * 179.75438 * 8 7 5 10 10 C 1.34510 * 106.83678 * 0.37258 * 9 8 7 11 11 C 1.50706 * 125.79032 * 179.88883 * 10 9 8 12 12 N 1.46500 * 109.47134 * 89.68884 * 11 10 9 13 13 C 1.34772 * 120.00383 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99720 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.00401 * 180.02562 * 13 12 11 16 16 S 1.81005 * 109.47415 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99931 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00293 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99843 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99846 * 359.71985 * 19 17 16 21 21 Si 1.86795 * 120.00110 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47071 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47211 * 119.99794 * 21 19 17 24 24 H 1.48493 * 109.47327 * 239.99662 * 21 19 17 25 25 O 1.34302 * 108.42522 * 359.62627 * 10 9 8 26 26 H 1.08995 * 109.46961 * 274.30914 * 1 2 3 27 27 H 1.09000 * 109.47272 * 34.30746 * 1 2 3 28 28 H 1.08997 * 109.47038 * 154.30294 * 1 2 3 29 29 H 1.09003 * 117.50188 * 145.02162 * 4 2 1 30 30 H 1.08993 * 117.52146 * 359.97438 * 4 2 1 31 31 H 1.08008 * 126.57615 * 0.02562 * 8 7 5 32 32 H 1.07997 * 126.57860 * 180.24325 * 9 8 7 33 33 H 1.09002 * 109.46838 * 329.69321 * 11 10 9 34 34 H 1.08991 * 109.47540 * 209.69213 * 11 10 9 35 35 H 0.97003 * 119.99680 * 0.02562 * 12 11 10 36 36 H 1.09002 * 109.47362 * 59.99907 * 15 13 12 37 37 H 1.09005 * 109.46865 * 300.00021 * 15 13 12 38 38 H 0.97000 * 120.00210 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1209 -0.7652 5 6 2.2365 -1.1210 0.7649 6 1 1.6116 -1.8590 1.2678 7 6 3.5293 -0.7813 1.4607 8 6 3.7640 -0.8885 2.7808 9 6 5.0982 -0.4727 2.9949 10 6 5.5964 -0.1284 1.7938 11 6 6.9904 0.3803 1.5309 12 7 7.8809 -0.7517 1.2627 13 6 9.1849 -0.5357 0.9994 14 8 9.6213 0.5958 0.9849 15 6 10.1008 -1.7000 0.7230 16 16 11.7751 -1.0891 0.4073 17 6 12.6092 -2.6151 0.1242 18 1 12.0646 -3.5462 0.1769 19 6 13.9667 -2.6206 -0.1657 20 7 14.6296 -1.4854 -0.2344 21 14 14.8509 -4.2382 -0.4666 22 1 13.8871 -5.3605 -0.3383 23 1 15.4322 -4.2379 -1.8332 24 1 15.9367 -4.4022 0.5330 25 8 4.6428 -0.3204 0.8678 26 1 -0.3633 0.0772 1.0247 27 1 -0.3634 0.8489 -0.5792 28 1 -0.3633 -0.9260 -0.4456 29 1 3.1715 -0.8751 -1.2685 30 1 1.6115 -1.8587 -1.2683 31 1 3.0681 -1.2311 3.5325 32 1 5.6170 -0.4364 3.9414 33 1 7.3489 0.9256 2.4040 34 1 6.9778 1.0451 0.6673 35 1 7.5319 -1.6567 1.2747 36 1 9.7425 -2.2448 -0.1505 37 1 10.1131 -2.3654 1.5863 38 1 15.5781 -1.4892 -0.4373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603971380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:03 Heat of formation + Delta-G solvation = -27.065281 kcal Electronic energy + Delta-G solvation = -19852.349866 eV Core-core repulsion = 16594.483991 eV Total energy + Delta-G solvation = -3257.865874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.71281 -40.63136 -38.70741 -36.13085 -34.58849 -34.04864 -32.27685 -30.63743 -29.19547 -27.70860 -26.73462 -23.33144 -22.83038 -21.90188 -21.70647 -20.93685 -19.92375 -18.38754 -17.87027 -17.30026 -16.88689 -16.84284 -16.71517 -15.92978 -15.66056 -15.36301 -14.83967 -14.65799 -14.46540 -14.39776 -13.94288 -13.81620 -13.54570 -13.25565 -13.16626 -12.96851 -12.90253 -12.80894 -12.60424 -12.39959 -11.72947 -11.60709 -11.17645 -11.16226 -11.04434 -10.81395 -10.28938 -10.28517 -9.28567 -8.67395 -8.35325 -6.13335 0.44974 1.24690 1.41374 1.41872 1.52272 1.53711 1.61059 1.75067 2.26261 2.38530 2.84720 2.98887 3.30338 3.33454 3.61157 3.84073 3.86484 3.91966 4.06105 4.11702 4.28015 4.36634 4.39386 4.48399 4.50409 4.68382 4.81037 4.87464 4.94453 4.98091 5.05686 5.10476 5.18424 5.22392 5.39296 5.42041 5.51727 6.12499 6.19763 6.36870 7.06122 7.12251 8.74128 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.030493 B = 0.002359 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.037048 B =11864.261464 C =12196.167445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.137 4.137 3 H 0.092 0.908 4 C -0.168 4.168 5 C -0.088 4.088 6 H 0.158 0.842 7 C 0.019 3.981 8 C -0.212 4.212 9 C -0.175 4.175 10 C -0.050 4.050 11 C 0.208 3.792 12 N -0.713 5.713 13 C 0.539 3.461 14 O -0.560 6.560 15 C -0.130 4.130 16 S -0.148 6.148 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.273 1.273 25 O -0.187 6.187 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.173 0.827 32 H 0.167 0.833 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.388 -2.185 4.201 30.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.155 4.155 3 H 0.110 0.890 4 C -0.205 4.205 5 C -0.105 4.105 6 H 0.175 0.825 7 C -0.031 4.031 8 C -0.231 4.231 9 C -0.195 4.195 10 C -0.100 4.100 11 C 0.085 3.915 12 N -0.368 5.368 13 C 0.325 3.675 14 O -0.438 6.438 15 C -0.281 4.281 16 S 0.079 5.921 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.193 4.193 20 N -0.547 5.547 21 Si 0.822 3.178 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.199 1.199 25 O -0.084 6.084 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.141 0.859 31 H 0.190 0.810 32 H 0.185 0.815 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.252 0.748 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -29.494 -0.147 3.836 29.742 hybrid contribution 0.396 -2.128 -0.026 2.165 sum -29.098 -2.275 3.810 29.434 Atomic orbital electron populations 1.21399 0.90292 1.03132 1.02865 1.22554 0.96783 0.93879 1.02291 0.88954 1.23246 1.02905 1.02079 0.92280 1.20852 0.91098 1.04084 0.94500 0.82501 1.22021 0.87404 1.01360 0.92340 1.21826 0.97539 1.08051 0.95696 1.21965 0.95828 1.03130 0.98592 1.22105 0.91132 1.08913 0.87831 1.19519 0.80488 0.88174 1.03334 1.45858 1.07317 1.11039 1.72557 1.20046 0.82458 0.89627 0.75369 1.90704 1.76099 1.25257 1.51744 1.23369 0.98344 0.99973 1.06383 1.85560 1.00107 1.14184 1.92235 1.23239 0.97283 0.93188 1.55666 0.89900 1.26143 0.97345 1.01667 0.94098 1.70188 1.09719 1.28144 1.46680 0.84890 0.77934 0.76999 0.78026 1.18070 1.19944 1.19873 1.83933 1.20378 1.65818 1.38290 0.91195 0.91370 0.91133 0.89862 0.85922 0.80965 0.81520 0.87665 0.90778 0.74835 0.87272 0.86934 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.19 71.98 0.73 -0.16 16 2 C -0.14 -1.66 6.11 -10.79 -0.07 -1.73 16 3 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.17 -2.17 9.81 30.60 0.30 -1.87 16 5 C -0.09 -1.14 5.96 -11.54 -0.07 -1.21 16 6 H 0.16 1.29 8.14 -2.39 -0.02 1.27 16 7 C 0.02 0.36 6.80 24.83 0.17 0.53 16 8 C -0.21 -3.59 10.81 22.19 0.24 -3.35 16 9 C -0.18 -3.27 10.81 22.19 0.24 -3.03 16 10 C -0.05 -1.10 6.69 24.83 0.17 -0.93 16 11 C 0.21 5.06 6.20 85.63 0.53 5.59 16 12 N -0.71 -19.12 5.55 -466.80 -2.59 -21.71 16 13 C 0.54 20.04 7.85 87.66 0.69 20.72 16 14 O -0.56 -25.82 15.86 -3.03 -0.05 -25.87 16 15 C -0.13 -5.17 6.16 71.23 0.44 -4.73 16 16 S -0.15 -8.24 20.57 -56.49 -1.16 -9.41 16 17 C -0.55 -31.27 9.50 67.96 0.65 -30.63 16 18 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.70 5.49 84.86 0.47 1.16 16 20 N -0.91 -56.07 13.22 21.65 0.29 -55.79 16 21 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 O -0.19 -4.34 10.36 -2.54 -0.03 -4.36 16 26 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.38 7.90 -2.39 -0.02 0.37 16 29 H 0.08 1.40 7.96 -2.39 -0.02 1.38 16 30 H 0.12 1.08 8.05 -2.39 -0.02 1.07 16 31 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 32 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 33 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.41 8.96 8.46 -92.71 -0.78 8.18 16 36 H 0.11 3.95 8.14 -2.39 -0.02 3.94 16 37 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 38 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -75.54 348.55 3.25 -72.28 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.28 Total: 18.70 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 4.48 Total: -19.63 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -2.30 Total: -77.49 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.07 Total: -30.23 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.41 kcal Total: -75.54 3.25 -72.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603971380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.218 kcal (2) G-P(sol) polarization free energy of solvation -75.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds