Wall clock time and date at job start Tue Mar 31 2020 07:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 115.55336 * 2 1 4 4 C 1.53002 * 117.49883 * 145.70280 * 2 1 3 5 5 C 1.52999 * 117.49874 * 214.32502 * 2 1 3 6 6 H 1.08995 * 117.50075 * 0.02562 * 5 2 1 7 7 C 1.50704 * 117.49872 * 145.02181 * 5 2 1 8 8 C 1.34515 * 125.79099 * 239.99829 * 7 5 2 9 9 C 1.41385 * 106.83992 * 179.97438 * 8 7 5 10 10 C 1.34512 * 106.83926 * 0.23220 * 9 8 7 11 11 C 1.50702 * 125.78762 * 179.76997 * 10 9 8 12 12 N 1.46502 * 109.47150 * 90.02179 * 11 10 9 13 13 C 1.34778 * 120.00069 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99521 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00066 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.47134 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99888 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99934 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00010 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99965 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00005 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47021 * 60.00382 * 21 19 17 23 23 H 1.48507 * 109.47195 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47533 * 300.00204 * 21 19 17 25 25 O 1.34305 * 108.42433 * 359.63135 * 10 9 8 26 26 H 1.08999 * 109.46929 * 205.67385 * 1 2 3 27 27 H 1.08994 * 109.47239 * 325.67592 * 1 2 3 28 28 H 1.09001 * 109.47067 * 85.67305 * 1 2 3 29 29 H 1.08998 * 117.49742 * 0.02562 * 4 2 1 30 30 H 1.08995 * 117.50199 * 214.97752 * 4 2 1 31 31 H 1.08002 * 126.57938 * 359.94618 * 8 7 5 32 32 H 1.08002 * 126.57514 * 179.97438 * 9 8 7 33 33 H 1.08999 * 109.47283 * 210.02243 * 11 10 9 34 34 H 1.09005 * 109.47007 * 330.02445 * 11 10 9 35 35 H 0.97003 * 119.99826 * 359.97438 * 12 11 10 36 36 H 1.08999 * 109.47091 * 300.00026 * 15 13 12 37 37 H 1.09005 * 109.46939 * 60.00069 * 15 13 12 38 38 H 0.96997 * 120.00455 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1212 0.7647 5 6 2.2365 -1.1208 -0.7653 6 1 1.6113 -1.8579 -1.2691 7 6 3.5293 -0.7807 -1.4610 8 6 3.7641 -0.8879 -2.7812 9 6 5.0962 -0.4658 -2.9959 10 6 5.5975 -0.1309 -1.7934 11 6 6.9930 0.3731 -1.5297 12 7 7.0103 1.8349 -1.6241 13 6 8.1599 2.5096 -1.4247 14 8 9.1802 1.9063 -1.1677 15 6 8.1778 4.0133 -1.5224 16 16 9.8539 4.6186 -1.2055 17 6 9.5908 6.3523 -1.3779 18 1 8.6060 6.7283 -1.6127 19 6 10.6490 7.2348 -1.2108 20 7 11.8492 6.7766 -0.9241 21 14 10.3702 9.0727 -1.3942 22 1 9.3665 9.5231 -0.3966 23 1 11.6496 9.7924 -1.1695 24 1 9.8729 9.3638 -2.7628 25 8 4.6424 -0.3189 -0.8681 26 1 -0.3633 -0.9262 0.4452 27 1 -0.3633 0.8487 0.5794 28 1 -0.3633 0.0775 -1.0247 29 1 1.6112 -1.8590 1.2675 30 1 3.1715 -0.8756 1.2681 31 1 3.0685 -1.2309 -3.5328 32 1 5.6135 -0.4246 -3.9431 33 1 7.3062 0.0698 -0.5306 34 1 7.6765 -0.0468 -2.2678 35 1 6.1945 2.3173 -1.8307 36 1 7.8646 4.3162 -2.5215 37 1 7.4945 4.4335 -0.7843 38 1 12.5888 7.3932 -0.8077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603971381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:06 Heat of formation + Delta-G solvation = -5.559475 kcal Electronic energy + Delta-G solvation = -19909.891629 eV Core-core repulsion = 16652.958316 eV Total energy + Delta-G solvation = -3256.933313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.90170 -39.15979 -38.13994 -34.85133 -33.22247 -32.42710 -31.14644 -29.56031 -28.39700 -25.92766 -25.38194 -22.62063 -22.03378 -21.15762 -20.47474 -20.17627 -18.05476 -17.27976 -16.58303 -16.29252 -15.73866 -15.39247 -14.97153 -14.80152 -14.56664 -13.98325 -13.90792 -13.50862 -13.49288 -13.11604 -13.04842 -12.69010 -12.57963 -12.31339 -12.24796 -11.89814 -11.74782 -11.04620 -11.03500 -11.01207 -10.77439 -10.51467 -10.11868 -9.83182 -9.53966 -9.07064 -8.99001 -8.49241 -8.24533 -6.50275 -6.21344 -3.92183 1.29115 2.25101 2.50597 3.04562 3.09644 3.23954 3.28298 3.33743 3.40881 3.77390 4.00316 4.20620 4.30830 4.39353 4.47303 4.80143 4.84402 4.88277 5.09866 5.13673 5.17302 5.26421 5.31819 5.34238 5.44589 5.51310 5.59965 5.65546 5.70028 5.76580 5.83409 5.84582 5.88297 6.13418 6.25008 6.46961 6.92580 7.59372 7.62993 8.35271 8.53867 9.23777 10.86042 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022822 B = 0.002543 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.595191 B =11008.807688 C =11732.356992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.139 4.139 3 H 0.108 0.892 4 C -0.165 4.165 5 C -0.083 4.083 6 H 0.134 0.866 7 C 0.026 3.974 8 C -0.207 4.207 9 C -0.183 4.183 10 C -0.030 4.030 11 C 0.204 3.796 12 N -0.737 5.737 13 C 0.534 3.466 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 O -0.168 6.168 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.711 -16.188 -1.323 27.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.157 4.157 3 H 0.126 0.874 4 C -0.202 4.202 5 C -0.101 4.101 6 H 0.152 0.848 7 C -0.025 4.025 8 C -0.226 4.226 9 C -0.203 4.203 10 C -0.080 4.080 11 C 0.081 3.919 12 N -0.393 5.393 13 C 0.321 3.679 14 O -0.389 6.389 15 C -0.303 4.303 16 S 0.168 5.832 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 O -0.064 6.064 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.235 0.765 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.749 -17.104 -0.533 26.895 hybrid contribution -1.762 2.001 -0.814 2.788 sum -22.511 -15.102 -1.347 27.141 Atomic orbital electron populations 1.21392 0.92037 1.02374 1.02248 1.22530 0.95576 0.94838 1.02773 0.87351 1.23207 1.03271 1.01362 0.92355 1.20607 0.91871 1.03304 0.94310 0.84816 1.21415 0.87118 1.02287 0.91674 1.21496 0.97510 1.08259 0.95350 1.21684 0.95408 1.04850 0.98346 1.22340 0.91597 1.06766 0.87324 1.19542 0.87104 0.81253 1.04013 1.46108 1.12296 1.05920 1.74974 1.20345 0.82477 0.89609 0.75496 1.90715 1.32343 1.69901 1.45990 1.23532 1.08467 0.93147 1.05182 1.85392 1.01146 1.04378 1.92310 1.22827 0.98243 0.91333 1.56046 0.90954 1.24993 0.94433 0.99620 0.94535 1.70005 1.00057 1.35506 1.44724 0.86218 0.77688 0.82746 0.78807 1.19937 1.20805 1.19939 1.83950 1.19549 1.65245 1.37667 0.92263 0.91622 0.91869 0.87842 0.87982 0.83345 0.83022 0.89866 0.88299 0.76486 0.89066 0.89117 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.19 37.16 0.38 -0.25 16 2 C -0.14 -0.97 6.11 -90.62 -0.55 -1.53 16 3 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.17 -1.16 9.81 -26.73 -0.26 -1.43 16 5 C -0.08 -0.62 5.96 -91.77 -0.55 -1.17 16 6 H 0.13 0.75 8.14 -51.93 -0.42 0.32 16 7 C 0.03 0.26 6.80 -35.62 -0.24 0.02 16 8 C -0.21 -1.99 10.81 -39.70 -0.43 -2.42 16 9 C -0.18 -1.88 10.81 -39.70 -0.43 -2.31 16 10 C -0.03 -0.35 6.69 -35.62 -0.24 -0.58 16 11 C 0.20 2.54 6.20 -5.19 -0.03 2.50 16 12 N -0.74 -10.25 5.55 -61.47 -0.34 -10.60 16 13 C 0.53 10.00 7.85 -10.99 -0.09 9.91 16 14 O -0.52 -11.62 15.86 5.55 0.09 -11.53 16 15 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 16 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 17 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 18 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 21 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 O -0.17 -2.00 10.36 5.70 0.06 -1.94 16 26 H 0.06 0.25 7.90 -51.93 -0.41 -0.16 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.10 0.55 8.05 -51.93 -0.42 0.13 16 30 H 0.10 0.85 7.96 -51.93 -0.41 0.43 16 31 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.40 4.69 8.46 -40.82 -0.35 4.35 16 36 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 37 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 38 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 348.55 15.07 5.25 5.25 Total: -1.00 -34.11 348.55 -8.82 -42.93 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.36 Total: 1.88 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -2.02 Total: -13.13 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.39 Total: -36.07 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.15 Total: -13.47 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.11 -8.82 -42.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603971381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.374 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds