Wall clock time and date at job start Tue Mar 31 2020 07:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 115.55336 * 2 1 4 4 C 1.53002 * 117.49883 * 145.70280 * 2 1 3 5 5 C 1.52999 * 117.49874 * 214.32502 * 2 1 3 6 6 H 1.08995 * 117.50075 * 0.02562 * 5 2 1 7 7 C 1.50704 * 117.49872 * 145.02181 * 5 2 1 8 8 C 1.34515 * 125.79099 * 239.99829 * 7 5 2 9 9 C 1.41385 * 106.83992 * 179.97438 * 8 7 5 10 10 C 1.34512 * 106.83926 * 0.23220 * 9 8 7 11 11 C 1.50702 * 125.78762 * 179.76997 * 10 9 8 12 12 N 1.46502 * 109.47150 * 90.02179 * 11 10 9 13 13 C 1.34778 * 120.00069 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99521 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00066 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.47134 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99888 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99934 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00010 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99965 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00005 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47021 * 60.00382 * 21 19 17 23 23 H 1.48507 * 109.47195 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47533 * 300.00204 * 21 19 17 25 25 O 1.34305 * 108.42433 * 359.63135 * 10 9 8 26 26 H 1.08999 * 109.46929 * 205.67385 * 1 2 3 27 27 H 1.08994 * 109.47239 * 325.67592 * 1 2 3 28 28 H 1.09001 * 109.47067 * 85.67305 * 1 2 3 29 29 H 1.08998 * 117.49742 * 0.02562 * 4 2 1 30 30 H 1.08995 * 117.50199 * 214.97752 * 4 2 1 31 31 H 1.08002 * 126.57938 * 359.94618 * 8 7 5 32 32 H 1.08002 * 126.57514 * 179.97438 * 9 8 7 33 33 H 1.08999 * 109.47283 * 210.02243 * 11 10 9 34 34 H 1.09005 * 109.47007 * 330.02445 * 11 10 9 35 35 H 0.97003 * 119.99826 * 359.97438 * 12 11 10 36 36 H 1.08999 * 109.47091 * 300.00026 * 15 13 12 37 37 H 1.09005 * 109.46939 * 60.00069 * 15 13 12 38 38 H 0.96997 * 120.00455 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1212 0.7647 5 6 2.2365 -1.1208 -0.7653 6 1 1.6113 -1.8579 -1.2691 7 6 3.5293 -0.7807 -1.4610 8 6 3.7641 -0.8879 -2.7812 9 6 5.0962 -0.4658 -2.9959 10 6 5.5975 -0.1309 -1.7934 11 6 6.9930 0.3731 -1.5297 12 7 7.0103 1.8349 -1.6241 13 6 8.1599 2.5096 -1.4247 14 8 9.1802 1.9063 -1.1677 15 6 8.1778 4.0133 -1.5224 16 16 9.8539 4.6186 -1.2055 17 6 9.5908 6.3523 -1.3779 18 1 8.6060 6.7283 -1.6127 19 6 10.6490 7.2348 -1.2108 20 7 11.8492 6.7766 -0.9241 21 14 10.3702 9.0727 -1.3942 22 1 9.3665 9.5231 -0.3966 23 1 11.6496 9.7924 -1.1695 24 1 9.8729 9.3638 -2.7628 25 8 4.6424 -0.3189 -0.8681 26 1 -0.3633 -0.9262 0.4452 27 1 -0.3633 0.8487 0.5794 28 1 -0.3633 0.0775 -1.0247 29 1 1.6112 -1.8590 1.2675 30 1 3.1715 -0.8756 1.2681 31 1 3.0685 -1.2309 -3.5328 32 1 5.6135 -0.4246 -3.9431 33 1 7.3062 0.0698 -0.5306 34 1 7.6765 -0.0468 -2.2678 35 1 6.1945 2.3173 -1.8307 36 1 7.8646 4.3162 -2.5215 37 1 7.4945 4.4335 -0.7843 38 1 12.5888 7.3932 -0.8077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603971381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:05 Heat of formation + Delta-G solvation = -26.946987 kcal Electronic energy + Delta-G solvation = -19910.819061 eV Core-core repulsion = 16652.958316 eV Total energy + Delta-G solvation = -3257.860745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.71179 -40.63151 -38.70600 -36.13112 -34.58712 -34.04854 -32.27676 -30.63731 -29.19599 -27.70380 -26.73312 -23.33109 -22.83019 -21.90549 -21.70242 -20.93615 -19.92174 -18.38396 -17.85276 -17.34342 -16.88049 -16.81482 -16.72002 -15.92061 -15.70800 -15.31628 -14.83802 -14.64170 -14.44957 -14.42692 -13.93639 -13.81573 -13.55376 -13.26643 -13.17605 -12.96259 -12.86105 -12.81134 -12.62999 -12.39531 -11.76181 -11.59782 -11.17929 -11.13147 -11.04351 -10.81452 -10.29800 -10.28647 -9.28541 -8.67512 -8.34755 -6.13172 0.44896 1.24871 1.42562 1.44055 1.51248 1.53523 1.59490 1.74552 2.26870 2.38306 2.85037 2.99251 3.30424 3.33628 3.61287 3.84185 3.86503 3.91788 4.06115 4.11901 4.27764 4.37026 4.39527 4.48246 4.50269 4.68346 4.81062 4.87263 4.94407 4.98160 5.05708 5.10598 5.18952 5.22228 5.39207 5.41459 5.51778 6.12561 6.19429 6.36459 7.06301 7.11994 8.74220 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022822 B = 0.002543 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.595191 B =11008.807688 C =11732.356992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.138 4.138 3 H 0.091 0.909 4 C -0.167 4.167 5 C -0.087 4.087 6 H 0.158 0.842 7 C 0.019 3.981 8 C -0.212 4.212 9 C -0.175 4.175 10 C -0.050 4.050 11 C 0.208 3.792 12 N -0.713 5.713 13 C 0.539 3.461 14 O -0.560 6.560 15 C -0.130 4.130 16 S -0.148 6.148 17 C -0.548 4.548 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.262 1.262 25 O -0.187 6.187 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.124 0.876 30 H 0.083 0.917 31 H 0.173 0.827 32 H 0.167 0.833 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.415 0.585 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.696 -16.069 -2.242 30.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.156 4.156 3 H 0.109 0.891 4 C -0.204 4.204 5 C -0.105 4.105 6 H 0.175 0.825 7 C -0.031 4.031 8 C -0.231 4.231 9 C -0.195 4.195 10 C -0.100 4.100 11 C 0.085 3.915 12 N -0.368 5.368 13 C 0.325 3.675 14 O -0.438 6.438 15 C -0.281 4.281 16 S 0.079 5.921 17 C -0.696 4.696 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.186 1.186 25 O -0.084 6.084 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.142 0.858 30 H 0.102 0.898 31 H 0.190 0.810 32 H 0.185 0.815 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.251 0.749 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.792 -17.000 -1.464 29.278 hybrid contribution -0.960 1.836 -0.531 2.139 sum -24.751 -15.164 -1.995 29.096 Atomic orbital electron populations 1.21397 0.90346 1.03117 1.02838 1.22546 0.96761 0.93902 1.02436 0.89076 1.23248 1.02892 1.02006 0.92251 1.20852 0.91060 1.04046 0.94506 0.82453 1.22027 0.87291 1.01483 0.92332 1.21828 0.97577 1.08026 0.95687 1.21967 0.95774 1.03377 0.98407 1.22106 0.91292 1.08744 0.87838 1.19528 0.88387 0.79804 1.03807 1.45862 1.11267 1.06808 1.72850 1.20050 0.83057 0.88993 0.75417 1.90705 1.34196 1.70414 1.48450 1.23368 1.03609 0.94263 1.06826 1.85556 1.07954 1.05633 1.92913 1.23173 0.98896 0.91480 1.56021 0.89906 1.26135 0.93952 1.05283 0.93795 1.70172 1.01185 1.37475 1.45885 0.84998 0.77896 0.75646 0.79420 1.18705 1.20361 1.18634 1.83933 1.20263 1.65845 1.38374 0.91032 0.91503 0.91235 0.85818 0.89834 0.80964 0.81522 0.90743 0.87642 0.74876 0.86943 0.87294 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.19 71.98 0.73 -0.22 16 2 C -0.14 -1.73 6.11 -10.79 -0.07 -1.80 16 3 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.17 -2.14 9.81 30.60 0.30 -1.84 16 5 C -0.09 -1.13 5.96 -11.54 -0.07 -1.20 16 6 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 7 C 0.02 0.36 6.80 24.83 0.17 0.52 16 8 C -0.21 -3.59 10.81 22.19 0.24 -3.35 16 9 C -0.18 -3.27 10.81 22.19 0.24 -3.03 16 10 C -0.05 -1.10 6.69 24.83 0.17 -0.93 16 11 C 0.21 5.06 6.20 85.63 0.53 5.59 16 12 N -0.71 -19.13 5.55 -466.77 -2.59 -21.72 16 13 C 0.54 20.04 7.85 87.66 0.69 20.72 16 14 O -0.56 -25.80 15.86 -3.04 -0.05 -25.85 16 15 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 16 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 17 C -0.55 -31.38 9.50 67.95 0.65 -30.74 16 18 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.91 -56.10 13.22 21.65 0.29 -55.82 16 21 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 25 O -0.19 -4.34 10.36 -2.52 -0.03 -4.36 16 26 H 0.07 0.41 7.90 -2.39 -0.02 0.39 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.12 1.04 8.05 -2.39 -0.02 1.02 16 30 H 0.08 1.38 7.96 -2.39 -0.02 1.36 16 31 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 32 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.41 8.97 8.46 -92.71 -0.78 8.19 16 36 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 37 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 38 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -75.46 348.55 3.25 -72.20 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.28 Total: 19.03 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 4.48 Total: -19.78 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -2.30 Total: -77.54 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.07 Total: -30.21 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -75.46 3.25 -72.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603971381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.255 kcal (2) G-P(sol) polarization free energy of solvation -75.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds