Wall clock time and date at job start Tue Mar 31 2020 07:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47374 * 2 1 4 4 C 1.50700 * 109.47118 * 240.00107 * 2 1 3 5 5 H 1.08005 * 120.00051 * 239.99887 * 4 2 1 6 6 C 1.37873 * 120.00252 * 60.00127 * 4 2 1 7 7 N 1.31516 * 119.99818 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00165 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47447 * 269.99706 * 8 6 4 10 10 H 1.48499 * 109.47479 * 30.00129 * 8 6 4 11 11 H 1.48509 * 109.47180 * 149.99741 * 8 6 4 12 12 N 1.46500 * 109.47409 * 120.00325 * 2 1 3 13 13 S 1.65603 * 119.99939 * 264.33898 * 12 2 1 14 14 O 1.42098 * 104.27843 * 51.11056 * 13 12 2 15 15 O 1.42097 * 104.28018 * 178.97387 * 13 12 2 16 16 C 1.81410 * 104.44438 * 295.04131 * 13 12 2 17 17 C 1.54342 * 110.82368 * 295.14039 * 16 13 12 18 18 C 1.51366 * 105.17373 * 215.42724 * 17 16 13 19 19 C 1.38490 * 130.39286 * 197.18945 * 18 17 16 20 20 C 1.38105 * 120.21764 * 180.02562 * 19 18 17 21 21 C 1.38263 * 119.93238 * 0.02562 * 20 19 18 22 22 C 1.38106 * 119.93140 * 359.97438 * 21 20 19 23 23 C 1.38221 * 109.75563 * 17.19287 * 18 17 16 24 24 C 1.51371 * 109.76186 * 359.97438 * 23 18 17 25 25 H 1.08993 * 109.46989 * 53.64548 * 1 2 3 26 26 H 1.08999 * 109.47014 * 173.64575 * 1 2 3 27 27 H 1.09003 * 109.46952 * 293.64368 * 1 2 3 28 28 H 0.97004 * 120.00102 * 180.02562 * 7 6 4 29 29 H 0.97006 * 120.00570 * 84.32798 * 12 2 1 30 30 H 1.08996 * 110.72793 * 58.76662 * 16 13 12 31 31 H 1.09008 * 110.30309 * 334.35322 * 17 16 13 32 32 H 1.09007 * 110.30168 * 96.50104 * 17 16 13 33 33 H 1.07995 * 119.89156 * 0.02562 * 19 18 17 34 34 H 1.07996 * 120.03478 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.03384 * 179.97438 * 21 20 19 36 36 H 1.08004 * 119.88496 * 180.02562 * 22 21 20 37 37 H 1.09000 * 110.30470 * 223.89240 * 24 23 18 38 38 H 1.08997 * 110.38471 * 101.77627 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 3.6297 -0.5459 -4.4124 10 1 2.4858 -2.5662 -3.7120 11 1 1.3431 -0.9492 -5.1120 12 7 2.0184 -0.6907 1.1961 13 16 2.4278 0.1785 2.5450 14 8 1.2994 1.0088 2.7827 15 8 2.8249 -0.8062 3.4893 16 6 3.8529 1.1742 2.0264 17 6 5.0566 0.2717 1.6819 18 6 6.2753 1.0469 2.1345 19 6 7.6117 0.8894 1.8070 20 6 8.5643 1.7281 2.3516 21 6 8.1835 2.7281 3.2272 22 6 6.8513 2.8866 3.5549 23 6 5.8945 2.0473 3.0090 24 6 4.3938 2.0131 3.2035 25 1 -0.3633 0.6091 -0.8276 26 1 -0.3633 -1.0213 -0.1137 27 1 -0.3633 0.4122 0.9414 28 1 0.7082 1.1609 -3.4844 29 1 2.1019 -1.6571 1.1981 30 1 3.5905 1.8137 1.1836 31 1 4.9875 -0.6731 2.2213 32 1 5.0997 0.0925 0.6076 33 1 7.9099 0.1083 1.1235 34 1 9.6056 1.6023 2.0946 35 1 8.9271 3.3845 3.6544 36 1 6.5547 3.6683 4.2386 37 1 3.9847 3.0228 3.1683 38 1 4.1446 1.5375 4.1521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610576497.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:11 Heat of formation + Delta-G solvation = -55.460018 kcal Electronic energy + Delta-G solvation = -21867.750373 eV Core-core repulsion = 18608.653210 eV Total energy + Delta-G solvation = -3259.097163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.07197 -36.67558 -35.80826 -35.50224 -35.34572 -32.23703 -31.47854 -29.21739 -28.33288 -27.34949 -25.23858 -23.11560 -21.20607 -21.08934 -20.89360 -18.60018 -17.65669 -16.73947 -16.23406 -16.05139 -15.75888 -15.24226 -14.98738 -14.58910 -13.82928 -13.63724 -13.36969 -13.09876 -13.00866 -12.74499 -12.62220 -12.21842 -11.71842 -11.68229 -11.55364 -11.51171 -11.39470 -11.27676 -11.18201 -11.01252 -10.85792 -10.59151 -10.32904 -10.26397 -10.11516 -9.19079 -8.86281 -8.65931 -8.55440 -8.30311 -6.17967 -4.26327 0.77218 1.29837 1.34504 3.20737 3.27915 3.29508 3.36178 3.69549 4.08488 4.24686 4.31685 4.44465 4.74788 4.87865 4.94570 4.99151 5.09627 5.14480 5.23072 5.41873 5.50898 5.57483 5.65759 5.79578 6.01411 6.05874 6.09015 6.28098 6.36217 6.43994 6.62995 6.82294 6.94458 7.04214 7.08596 7.55519 7.68523 7.79414 7.99376 8.23554 8.77665 9.40744 10.87973 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.005383 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.235633 B = 5200.007721 C = 6416.404526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.274 3.726 3 H 0.038 0.962 4 C -0.528 4.528 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.285 1.285 12 N -1.100 6.100 13 S 2.616 3.384 14 O -0.958 6.958 15 O -0.976 6.976 16 C -0.601 4.601 17 C -0.056 4.056 18 C -0.081 4.081 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.106 4.106 23 C -0.091 4.091 24 C -0.058 4.058 25 H 0.087 0.913 26 H 0.033 0.967 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.409 0.591 30 H 0.149 0.851 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.434 2.622 8.787 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.170 3.830 3 H 0.056 0.944 4 C -0.568 4.568 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.860 5.860 13 S 2.707 3.293 14 O -0.948 6.948 15 O -0.966 6.966 16 C -0.708 4.708 17 C -0.094 4.094 18 C -0.082 4.082 19 C -0.124 4.124 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.124 4.124 23 C -0.092 4.092 24 C -0.096 4.096 25 H 0.105 0.895 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.243 0.757 30 H 0.167 0.833 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.111 0.889 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.876 2.931 9.471 14.717 hybrid contribution 0.829 -0.495 -1.544 1.822 sum 11.706 2.435 7.926 14.345 Atomic orbital electron populations 1.22204 0.98040 1.00701 1.00500 1.18520 0.91638 0.91834 0.81029 0.94411 1.21295 1.32194 1.13304 0.89963 0.91685 1.24923 0.94786 0.94990 0.99098 1.69896 1.35869 1.22618 1.23979 0.86488 0.78535 0.80020 0.82297 1.20640 1.19800 1.21118 1.55551 1.80582 1.18377 1.31508 1.04699 0.75717 0.75013 0.73875 1.93584 1.45729 1.70967 1.84472 1.93532 1.84755 1.57487 1.60861 1.31472 1.17714 1.12785 1.08805 1.20707 0.88257 0.96588 1.03826 1.20550 0.94172 0.96421 0.97044 1.20651 0.91511 0.99912 1.00342 1.21030 0.99178 0.95849 0.97786 1.21001 0.95586 0.98749 0.98908 1.20599 0.92397 0.99142 1.00292 1.20432 0.94757 0.96362 0.97630 1.20702 0.92107 1.01014 0.95817 0.89488 0.94753 0.95513 0.92546 0.75734 0.83268 0.88872 0.88038 0.85905 0.85917 0.85956 0.86127 0.88860 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.20 37.16 0.34 -3.35 16 2 C 0.27 6.33 2.67 -69.08 -0.18 6.15 16 3 H 0.04 0.91 7.18 -51.93 -0.37 0.53 16 4 C -0.53 -13.08 8.76 -34.44 -0.30 -13.39 16 5 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.64 11.39 55.43 0.63 -23.01 16 8 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 N -1.10 -21.34 5.35 -5.88 -0.03 -21.37 16 13 S 2.62 47.02 4.76 -107.50 -0.51 46.50 16 14 O -0.96 -20.08 17.11 -57.54 -0.98 -21.06 16 15 O -0.98 -18.65 17.44 -57.54 -1.00 -19.65 16 16 C -0.60 -9.21 3.58 -25.33 -0.09 -9.30 16 17 C -0.06 -0.82 6.33 -26.85 -0.17 -0.99 16 18 C -0.08 -1.14 6.14 -104.21 -0.64 -1.78 16 19 C -0.11 -1.31 10.04 -39.54 -0.40 -1.71 16 20 C -0.12 -1.30 10.05 -39.62 -0.40 -1.70 16 21 C -0.12 -1.31 10.05 -39.62 -0.40 -1.71 16 22 C -0.11 -1.24 10.04 -39.54 -0.40 -1.64 16 23 C -0.09 -1.24 6.14 -104.20 -0.64 -1.88 16 24 C -0.06 -0.79 6.34 -26.85 -0.17 -0.96 16 25 H 0.09 2.23 6.27 -51.93 -0.33 1.90 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.60 7.43 -51.93 -0.39 0.22 16 28 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.41 7.32 8.80 -34.47 -0.30 7.01 16 30 H 0.15 2.30 7.49 -51.93 -0.39 1.91 16 31 H 0.09 1.31 7.35 -51.92 -0.38 0.93 16 32 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.05 7.86 -51.93 -0.41 0.65 16 LS Contribution 326.68 15.07 4.92 4.92 Total: -1.00 -30.65 326.68 -10.61 -41.26 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.07 Total: 8.19 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -3.54 Total: -30.67 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.60 Total: -44.38 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -1.99 Total: -40.71 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 47.02 SS G_CDS: -0.51 Total: 46.50 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.65 -10.61 -41.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610576497.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.203 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds