Wall clock time and date at job start Tue Mar 31 2020 07:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47374 * 2 1 4 4 C 1.50700 * 109.47118 * 240.00107 * 2 1 3 5 5 H 1.08005 * 120.00051 * 239.99887 * 4 2 1 6 6 C 1.37873 * 120.00252 * 60.00127 * 4 2 1 7 7 N 1.31516 * 119.99818 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00165 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47447 * 269.99706 * 8 6 4 10 10 H 1.48499 * 109.47479 * 30.00129 * 8 6 4 11 11 H 1.48509 * 109.47180 * 149.99741 * 8 6 4 12 12 N 1.46500 * 109.47409 * 120.00325 * 2 1 3 13 13 S 1.65603 * 119.99939 * 264.33898 * 12 2 1 14 14 O 1.42098 * 104.27843 * 51.11056 * 13 12 2 15 15 O 1.42097 * 104.28018 * 178.97387 * 13 12 2 16 16 C 1.81410 * 104.44438 * 295.04131 * 13 12 2 17 17 C 1.54342 * 110.82368 * 295.14039 * 16 13 12 18 18 C 1.51366 * 105.17373 * 215.42724 * 17 16 13 19 19 C 1.38490 * 130.39286 * 197.18945 * 18 17 16 20 20 C 1.38105 * 120.21764 * 180.02562 * 19 18 17 21 21 C 1.38263 * 119.93238 * 0.02562 * 20 19 18 22 22 C 1.38106 * 119.93140 * 359.97438 * 21 20 19 23 23 C 1.38221 * 109.75563 * 17.19287 * 18 17 16 24 24 C 1.51371 * 109.76186 * 359.97438 * 23 18 17 25 25 H 1.08993 * 109.46989 * 53.64548 * 1 2 3 26 26 H 1.08999 * 109.47014 * 173.64575 * 1 2 3 27 27 H 1.09003 * 109.46952 * 293.64368 * 1 2 3 28 28 H 0.97004 * 120.00102 * 180.02562 * 7 6 4 29 29 H 0.97006 * 120.00570 * 84.32798 * 12 2 1 30 30 H 1.08996 * 110.72793 * 58.76662 * 16 13 12 31 31 H 1.09008 * 110.30309 * 334.35322 * 17 16 13 32 32 H 1.09007 * 110.30168 * 96.50104 * 17 16 13 33 33 H 1.07995 * 119.89156 * 0.02562 * 19 18 17 34 34 H 1.07996 * 120.03478 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.03384 * 179.97438 * 21 20 19 36 36 H 1.08004 * 119.88496 * 180.02562 * 22 21 20 37 37 H 1.09000 * 110.30470 * 223.89240 * 24 23 18 38 38 H 1.08997 * 110.38471 * 101.77627 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 3.6297 -0.5459 -4.4124 10 1 2.4858 -2.5662 -3.7120 11 1 1.3431 -0.9492 -5.1120 12 7 2.0184 -0.6907 1.1961 13 16 2.4278 0.1785 2.5450 14 8 1.2994 1.0088 2.7827 15 8 2.8249 -0.8062 3.4893 16 6 3.8529 1.1742 2.0264 17 6 5.0566 0.2717 1.6819 18 6 6.2753 1.0469 2.1345 19 6 7.6117 0.8894 1.8070 20 6 8.5643 1.7281 2.3516 21 6 8.1835 2.7281 3.2272 22 6 6.8513 2.8866 3.5549 23 6 5.8945 2.0473 3.0090 24 6 4.3938 2.0131 3.2035 25 1 -0.3633 0.6091 -0.8276 26 1 -0.3633 -1.0213 -0.1137 27 1 -0.3633 0.4122 0.9414 28 1 0.7082 1.1609 -3.4844 29 1 2.1019 -1.6571 1.1981 30 1 3.5905 1.8137 1.1836 31 1 4.9875 -0.6731 2.2213 32 1 5.0997 0.0925 0.6076 33 1 7.9099 0.1083 1.1235 34 1 9.6056 1.6023 2.0946 35 1 8.9271 3.3845 3.6544 36 1 6.5547 3.6683 4.2386 37 1 3.9847 3.0228 3.1683 38 1 4.1446 1.5375 4.1521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610576497.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:10 Heat of formation + Delta-G solvation = -74.716875 kcal Electronic energy + Delta-G solvation = -21868.585413 eV Core-core repulsion = 18608.653210 eV Total energy + Delta-G solvation = -3259.932203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.03136 -38.23294 -37.30317 -37.00348 -36.70805 -34.10025 -32.40162 -30.24552 -30.11473 -28.39107 -27.20843 -24.17041 -22.83885 -22.22859 -21.92541 -20.11869 -19.26020 -18.16378 -17.75553 -17.21311 -17.07345 -16.68658 -16.28031 -15.84789 -15.32474 -14.95935 -14.54098 -14.30557 -14.11374 -14.06628 -13.95848 -13.71724 -13.47095 -13.28991 -13.14940 -12.99814 -12.80923 -12.62761 -12.48597 -12.36028 -12.19228 -12.18269 -11.97535 -11.77557 -11.64371 -11.03642 -10.57367 -10.04689 -9.74665 -9.48993 -8.12430 -6.26195 -0.68835 0.39270 0.45896 1.46145 1.48895 1.57402 1.84241 2.45174 2.72713 2.80884 2.98989 3.18098 3.27103 3.54481 3.80598 3.91392 4.04374 4.15239 4.27342 4.39649 4.49046 4.57385 4.63444 4.74217 4.78518 4.79782 4.93499 5.09173 5.11723 5.17701 5.18633 5.50970 5.59408 5.61511 5.69069 5.75045 6.01602 6.09087 6.10930 6.43597 6.85592 7.43980 8.93325 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.005383 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.235633 B = 5200.007721 C = 6416.404526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.277 3.723 3 H 0.027 0.973 4 C -0.535 4.535 5 H 0.072 0.928 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.959 3.041 9 H -0.276 1.276 10 H -0.267 1.267 11 H -0.288 1.288 12 N -1.101 6.101 13 S 2.627 3.373 14 O -0.991 6.991 15 O -0.987 6.987 16 C -0.585 4.585 17 C -0.058 4.058 18 C -0.107 4.107 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.113 4.113 23 C -0.110 4.110 24 C -0.064 4.064 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.028 0.972 28 H 0.264 0.736 29 H 0.415 0.585 30 H 0.147 0.853 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.109 0.891 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.814 2.832 9.071 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.575 4.575 5 H 0.090 0.910 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.785 3.215 9 H -0.202 1.202 10 H -0.191 1.191 11 H -0.214 1.214 12 N -0.860 5.860 13 S 2.722 3.278 14 O -0.981 6.981 15 O -0.977 6.977 16 C -0.696 4.696 17 C -0.096 4.096 18 C -0.108 4.108 19 C -0.137 4.137 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.131 4.131 23 C -0.111 4.111 24 C -0.102 4.102 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.250 0.750 30 H 0.165 0.835 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.152 0.848 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.160 0.840 37 H 0.127 0.873 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.229 3.100 9.775 16.738 hybrid contribution 0.179 -0.521 -1.563 1.657 sum 13.408 2.579 8.212 15.933 Atomic orbital electron populations 1.22129 0.98828 1.00276 0.99710 1.18273 0.91041 0.91556 0.81948 0.95480 1.21599 1.31888 1.13404 0.90589 0.91034 1.25656 0.95035 0.95624 1.01806 1.70015 1.37035 1.23913 1.24463 0.85539 0.77887 0.79187 0.78883 1.20173 1.19142 1.21418 1.55361 1.81215 1.18882 1.30588 1.04241 0.75825 0.74571 0.73158 1.93538 1.48263 1.71400 1.84884 1.93511 1.84976 1.58200 1.61042 1.31207 1.16185 1.12551 1.09612 1.20717 0.88529 0.96666 1.03644 1.20612 0.94625 0.97167 0.98394 1.20923 0.91166 1.00758 1.00812 1.21424 1.00270 0.95094 0.97021 1.21432 0.95766 0.98678 0.98090 1.20937 0.92628 0.99167 1.00345 1.20535 0.94701 0.97269 0.98585 1.20827 0.92811 1.01537 0.95041 0.91443 0.94646 0.95346 0.92638 0.75024 0.83484 0.88777 0.88463 0.84804 0.83114 0.82860 0.83999 0.87287 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.27 9.20 71.98 0.66 -6.61 16 2 C 0.28 12.98 2.67 44.25 0.12 13.09 16 3 H 0.03 1.33 7.18 -2.39 -0.02 1.32 16 4 C -0.54 -26.48 8.76 25.60 0.22 -26.25 16 5 H 0.07 3.37 7.81 -2.91 -0.02 3.35 16 6 C 0.02 0.98 5.30 84.65 0.45 1.42 16 7 N -0.92 -49.36 11.39 21.45 0.24 -49.12 16 8 Si 0.96 40.54 29.54 68.60 2.03 42.57 16 9 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 12 N -1.10 -43.05 5.35 -172.52 -0.92 -43.98 16 13 S 2.63 95.05 4.76 -56.49 -0.27 94.79 16 14 O -0.99 -42.14 17.11 -127.65 -2.18 -44.32 16 15 O -0.99 -37.60 17.44 -127.65 -2.23 -39.82 16 16 C -0.58 -17.86 3.58 31.50 0.11 -17.74 16 17 C -0.06 -1.67 6.33 30.52 0.19 -1.48 16 18 C -0.11 -2.90 6.14 -19.60 -0.12 -3.02 16 19 C -0.12 -2.71 10.04 22.30 0.22 -2.48 16 20 C -0.12 -2.22 10.05 22.24 0.22 -1.99 16 21 C -0.12 -2.14 10.05 22.24 0.22 -1.92 16 22 C -0.11 -2.33 10.04 22.30 0.22 -2.11 16 23 C -0.11 -2.84 6.14 -19.59 -0.12 -2.96 16 24 C -0.06 -1.68 6.34 30.51 0.19 -1.48 16 25 H 0.07 3.53 6.27 -2.39 -0.01 3.52 16 26 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.03 1.31 7.43 -2.39 -0.02 1.30 16 28 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 29 H 0.42 14.89 8.80 -96.74 -0.85 14.04 16 30 H 0.15 4.59 7.49 -2.39 -0.02 4.57 16 31 H 0.09 2.64 7.35 -2.38 -0.02 2.62 16 32 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 33 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.09 2.20 7.86 -2.39 -0.02 2.18 16 Total: -1.00 -64.42 326.68 -0.50 -64.93 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.22 Total: 28.50 kcal Atomic # 6 Polarization: -56.15 SS G_CDS: 2.61 Total: -53.54 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -0.68 Total: -93.09 kcal Atomic # 8 Polarization: -79.74 SS G_CDS: -4.41 Total: -84.15 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: 95.05 SS G_CDS: -0.27 Total: 94.79 kcal Total: -64.42 -0.50 -64.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610576497.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.788 kcal (2) G-P(sol) polarization free energy of solvation -64.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds