Wall clock time and date at job start Tue Mar 31 2020 07:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47015 * 2 1 4 4 C 1.50703 * 109.47191 * 240.00019 * 2 1 3 5 5 H 1.08001 * 120.00123 * 265.71970 * 4 2 1 6 6 C 1.37880 * 119.99687 * 85.44002 * 4 2 1 7 7 N 1.31521 * 119.99793 * 185.13882 * 6 4 2 8 8 Si 1.86790 * 120.00256 * 5.13828 * 6 4 2 9 9 H 1.48500 * 109.47376 * 94.43034 * 8 6 4 10 10 H 1.48499 * 109.47306 * 214.43117 * 8 6 4 11 11 H 1.48504 * 109.47390 * 334.43330 * 8 6 4 12 12 N 1.46495 * 109.47126 * 120.00225 * 2 1 3 13 13 C 1.46496 * 120.00369 * 60.00216 * 12 2 1 14 14 C 1.34779 * 119.99903 * 239.99807 * 12 2 1 15 15 O 1.21555 * 119.99574 * 355.44585 * 14 12 2 16 16 C 1.47844 * 120.00329 * 175.44170 * 14 12 2 17 17 C 1.39597 * 120.14743 * 221.23982 * 16 14 12 18 18 C 1.37930 * 119.85513 * 179.74600 * 17 16 14 19 19 C 1.38386 * 120.14455 * 0.52914 * 18 17 16 20 20 C 1.38336 * 120.29077 * 359.74679 * 19 18 17 21 21 S 1.76193 * 119.92771 * 179.97438 * 20 19 18 22 22 C 1.81405 * 103.00150 * 269.97457 * 21 20 19 23 23 O 1.42100 * 103.00338 * 23.82535 * 21 20 19 24 24 C 1.37977 * 120.14609 * 359.97270 * 20 19 18 25 25 H 1.09006 * 109.46458 * 184.27499 * 1 2 3 26 26 H 1.08993 * 109.47042 * 304.27030 * 1 2 3 27 27 H 1.08999 * 109.47482 * 64.27673 * 1 2 3 28 28 H 0.96998 * 119.99933 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47657 * 95.23005 * 13 12 2 30 30 H 1.09003 * 109.47037 * 215.22805 * 13 12 2 31 31 H 1.09000 * 109.47268 * 335.22614 * 13 12 2 32 32 H 1.08003 * 120.07308 * 359.97438 * 17 16 14 33 33 H 1.08000 * 119.93127 * 180.27105 * 18 17 16 34 34 H 1.07995 * 119.85487 * 179.72175 * 19 18 17 35 35 H 1.09003 * 109.46560 * 60.00291 * 22 21 20 36 36 H 1.08998 * 109.46993 * 179.97438 * 22 21 20 37 37 H 1.08990 * 109.47102 * 300.00298 * 22 21 20 38 38 H 1.08000 * 120.07519 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.2782 -1.7611 -1.1849 6 6 2.1727 -0.0203 -2.4159 7 7 2.5137 -0.6605 -3.5130 8 14 1.8784 1.8236 -2.4637 9 1 3.1703 2.5357 -2.2931 10 1 1.2770 2.1953 -3.7696 11 1 0.9538 2.2060 -1.3662 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.1553 1.1012 1.8509 16 6 3.2028 -0.6998 3.3390 17 6 3.2035 0.0112 4.5403 18 6 3.5817 -0.6159 5.7092 19 6 3.9704 -1.9439 5.6910 20 6 3.9775 -2.6526 4.5030 21 16 4.4749 -4.3429 4.4908 22 6 6.2629 -4.2401 4.2023 23 8 4.2341 -4.7567 5.8287 24 6 3.5960 -2.0389 3.3277 25 1 -0.3632 -1.0249 0.0766 26 1 -0.3633 0.5786 0.8492 27 1 -0.3634 0.4460 -0.9258 28 1 2.6128 -0.1749 -4.3469 29 1 2.4615 -2.7357 1.0535 30 1 1.5330 -2.2629 2.4966 31 1 0.7359 -2.3247 0.9063 32 1 2.9049 1.0491 4.5551 33 1 3.5784 -0.0681 6.6400 34 1 4.2699 -2.4289 6.6082 35 1 6.7287 -3.6721 5.0077 36 1 6.6849 -5.2447 4.1754 37 1 6.4494 -3.7416 3.2512 38 1 3.6016 -2.5934 2.4009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613772566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:52 Heat of formation + Delta-G solvation = -33.768878 kcal Electronic energy + Delta-G solvation = -21584.988641 eV Core-core repulsion = 18326.832077 eV Total energy + Delta-G solvation = -3258.156564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05945 -38.12691 -35.89508 -35.58432 -32.95003 -31.53179 -31.27065 -29.76291 -28.96478 -26.50623 -25.27544 -23.91661 -22.93287 -21.17690 -19.13308 -17.76597 -17.24720 -16.81802 -16.34859 -15.83910 -15.33297 -15.22448 -14.94000 -14.70773 -14.04588 -13.84628 -13.67831 -13.20628 -13.03092 -12.75755 -12.67914 -12.42874 -12.31132 -12.21237 -11.88149 -11.75042 -11.53759 -11.36470 -11.13630 -10.67669 -10.50934 -10.42570 -9.81146 -9.41166 -9.36519 -9.22615 -8.91721 -8.62925 -8.55904 -7.79508 -6.19838 -4.21204 0.72539 1.05706 1.70237 2.48318 3.09843 3.26669 3.35788 3.41619 3.58821 3.73104 3.81977 4.35251 4.68253 4.79305 4.96934 4.97755 5.08044 5.15209 5.20821 5.30444 5.56921 5.60291 5.73611 5.77990 5.90543 6.02324 6.11495 6.19941 6.25369 6.32118 6.35910 6.53303 6.71183 6.88004 7.02731 7.35367 7.57820 8.04863 8.41139 8.76072 8.82529 9.42593 10.92130 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.004322 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.701223 B = 6477.286016 C = 7051.983321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.224 3.776 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.080 0.920 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.870 3.130 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.259 1.259 12 N -0.579 5.579 13 C 0.075 3.925 14 C 0.546 3.454 15 O -0.547 6.547 16 C -0.129 4.129 17 C -0.036 4.036 18 C -0.142 4.142 19 C -0.041 4.041 20 C -0.469 4.469 21 S 1.334 4.666 22 C -0.498 4.498 23 O -0.860 6.860 24 C -0.018 4.018 25 H 0.050 0.950 26 H 0.026 0.974 27 H 0.058 0.942 28 H 0.266 0.734 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 -7.025 13.891 15.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.123 3.877 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.098 0.902 6 C -0.124 4.124 7 N -0.528 5.528 8 Si 0.696 3.304 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.184 1.184 12 N -0.309 5.309 13 C -0.068 4.068 14 C 0.333 3.667 15 O -0.426 6.426 16 C -0.133 4.133 17 C -0.055 4.055 18 C -0.161 4.161 19 C -0.061 4.061 20 C -0.566 4.566 21 S 1.532 4.468 22 C -0.655 4.655 23 O -0.856 6.856 24 C -0.037 4.037 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.133 0.867 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.253 -7.231 13.659 15.506 hybrid contribution 1.007 2.314 1.352 2.863 sum 2.260 -4.917 15.011 15.957 Atomic orbital electron populations 1.22304 0.98343 1.00427 0.99794 1.19383 0.90695 0.95032 0.82552 0.91805 1.21095 1.45219 0.98258 0.91866 0.90213 1.24886 0.93941 0.98164 0.95374 1.69885 1.47069 1.36178 0.99689 0.86971 0.79526 0.86266 0.77606 1.19992 1.21187 1.18357 1.48083 1.48429 1.11804 1.22619 1.21954 1.01905 0.82840 1.00144 1.18234 0.79421 0.85970 0.83092 1.90744 1.55655 1.18697 1.77553 1.20273 1.03628 0.94717 0.94711 1.21395 0.93300 0.99712 0.91124 1.21172 1.01560 0.95148 0.98266 1.21200 0.93764 0.93873 0.97215 1.27572 1.13019 1.18625 0.97334 1.69639 0.88743 0.83612 1.04856 1.27762 1.21702 1.07748 1.08266 1.93073 1.79723 1.74281 1.38534 1.21366 0.91910 0.93120 0.97315 0.93059 0.95539 0.92281 0.92409 0.92255 0.92224 0.90280 0.84909 0.85386 0.85525 0.90061 0.87578 0.86719 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.85 37.16 0.33 -2.69 16 2 C 0.22 5.14 2.16 -69.08 -0.15 4.99 16 3 H 0.06 1.63 4.46 -51.93 -0.23 1.40 16 4 C -0.53 -13.72 8.84 -34.44 -0.30 -14.03 16 5 H 0.08 2.17 7.63 -52.49 -0.40 1.77 16 6 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 7 N -0.89 -25.81 13.96 55.43 0.77 -25.04 16 8 Si 0.87 21.23 26.37 -169.99 -4.48 16.75 16 9 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.26 -6.08 5.99 56.52 0.34 -5.74 16 12 N -0.58 -11.29 2.75 -176.38 -0.49 -11.78 16 13 C 0.07 1.09 7.97 59.84 0.48 1.56 16 14 C 0.55 10.76 7.33 -12.33 -0.09 10.67 16 15 O -0.55 -12.96 16.28 5.32 0.09 -12.88 16 16 C -0.13 -1.99 5.15 -104.97 -0.54 -2.53 16 17 C -0.04 -0.51 9.65 -39.19 -0.38 -0.88 16 18 C -0.14 -1.71 10.03 -39.64 -0.40 -2.11 16 19 C -0.04 -0.51 9.44 -39.49 -0.37 -0.88 16 20 C -0.47 -5.31 5.60 -39.64 -0.22 -5.53 16 21 S 1.33 11.44 14.18 -107.50 -1.52 9.92 16 22 C -0.50 -3.90 10.70 101.05 1.08 -2.82 16 23 O -0.86 -12.28 16.89 -35.23 -0.59 -12.88 16 24 C -0.02 -0.22 7.33 -39.18 -0.29 -0.50 16 25 H 0.05 0.93 6.52 -51.93 -0.34 0.59 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.22 6.93 -51.93 -0.36 0.86 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.06 0.77 6.85 -51.93 -0.36 0.41 16 30 H 0.06 0.70 6.00 -51.93 -0.31 0.39 16 31 H 0.08 1.14 6.37 -51.93 -0.33 0.81 16 32 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 1.55 7.44 -52.49 -0.39 1.16 16 35 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.15 1.50 5.52 -52.49 -0.29 1.21 16 LS Contribution 323.85 15.07 4.88 4.88 Total: -1.00 -36.58 323.85 -7.04 -43.63 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.74 Total: 0.05 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -0.95 Total: -12.64 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.29 Total: -36.82 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.51 Total: -25.75 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.48 Total: 16.75 kcal Atomic # 16 Polarization: 11.44 SS G_CDS: -1.52 Total: 9.92 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.58 -7.04 -43.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613772566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.856 kcal (2) G-P(sol) polarization free energy of solvation -36.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds