Wall clock time and date at job start Tue Mar 31 2020 07:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47015 * 2 1 4 4 C 1.50703 * 109.47191 * 240.00019 * 2 1 3 5 5 H 1.08001 * 120.00123 * 265.71970 * 4 2 1 6 6 C 1.37880 * 119.99687 * 85.44002 * 4 2 1 7 7 N 1.31521 * 119.99793 * 185.13882 * 6 4 2 8 8 Si 1.86790 * 120.00256 * 5.13828 * 6 4 2 9 9 H 1.48500 * 109.47376 * 94.43034 * 8 6 4 10 10 H 1.48499 * 109.47306 * 214.43117 * 8 6 4 11 11 H 1.48504 * 109.47390 * 334.43330 * 8 6 4 12 12 N 1.46495 * 109.47126 * 120.00225 * 2 1 3 13 13 C 1.46496 * 120.00369 * 60.00216 * 12 2 1 14 14 C 1.34779 * 119.99903 * 239.99807 * 12 2 1 15 15 O 1.21555 * 119.99574 * 355.44585 * 14 12 2 16 16 C 1.47844 * 120.00329 * 175.44170 * 14 12 2 17 17 C 1.39597 * 120.14743 * 221.23982 * 16 14 12 18 18 C 1.37930 * 119.85513 * 179.74600 * 17 16 14 19 19 C 1.38386 * 120.14455 * 0.52914 * 18 17 16 20 20 C 1.38336 * 120.29077 * 359.74679 * 19 18 17 21 21 S 1.76193 * 119.92771 * 179.97438 * 20 19 18 22 22 C 1.81405 * 103.00150 * 269.97457 * 21 20 19 23 23 O 1.42100 * 103.00338 * 23.82535 * 21 20 19 24 24 C 1.37977 * 120.14609 * 359.97270 * 20 19 18 25 25 H 1.09006 * 109.46458 * 184.27499 * 1 2 3 26 26 H 1.08993 * 109.47042 * 304.27030 * 1 2 3 27 27 H 1.08999 * 109.47482 * 64.27673 * 1 2 3 28 28 H 0.96998 * 119.99933 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47657 * 95.23005 * 13 12 2 30 30 H 1.09003 * 109.47037 * 215.22805 * 13 12 2 31 31 H 1.09000 * 109.47268 * 335.22614 * 13 12 2 32 32 H 1.08003 * 120.07308 * 359.97438 * 17 16 14 33 33 H 1.08000 * 119.93127 * 180.27105 * 18 17 16 34 34 H 1.07995 * 119.85487 * 179.72175 * 19 18 17 35 35 H 1.09003 * 109.46560 * 60.00291 * 22 21 20 36 36 H 1.08998 * 109.46993 * 179.97438 * 22 21 20 37 37 H 1.08990 * 109.47102 * 300.00298 * 22 21 20 38 38 H 1.08000 * 120.07519 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.2782 -1.7611 -1.1849 6 6 2.1727 -0.0203 -2.4159 7 7 2.5137 -0.6605 -3.5130 8 14 1.8784 1.8236 -2.4637 9 1 3.1703 2.5357 -2.2931 10 1 1.2770 2.1953 -3.7696 11 1 0.9538 2.2060 -1.3662 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.1553 1.1012 1.8509 16 6 3.2028 -0.6998 3.3390 17 6 3.2035 0.0112 4.5403 18 6 3.5817 -0.6159 5.7092 19 6 3.9704 -1.9439 5.6910 20 6 3.9775 -2.6526 4.5030 21 16 4.4749 -4.3429 4.4908 22 6 6.2629 -4.2401 4.2023 23 8 4.2341 -4.7567 5.8287 24 6 3.5960 -2.0389 3.3277 25 1 -0.3632 -1.0249 0.0766 26 1 -0.3633 0.5786 0.8492 27 1 -0.3634 0.4460 -0.9258 28 1 2.6128 -0.1749 -4.3469 29 1 2.4615 -2.7357 1.0535 30 1 1.5330 -2.2629 2.4966 31 1 0.7359 -2.3247 0.9063 32 1 2.9049 1.0491 4.5551 33 1 3.5784 -0.0681 6.6400 34 1 4.2699 -2.4289 6.6082 35 1 6.7287 -3.6721 5.0077 36 1 6.6849 -5.2447 4.1754 37 1 6.4494 -3.7416 3.2512 38 1 3.6016 -2.5934 2.4009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613772566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:51 Heat of formation + Delta-G solvation = -60.069296 kcal Electronic energy + Delta-G solvation = -21586.129113 eV Core-core repulsion = 18326.832077 eV Total energy + Delta-G solvation = -3259.297036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37306 -39.37445 -37.22944 -36.85882 -34.77747 -33.03685 -32.26685 -31.19161 -29.60855 -27.81861 -27.17730 -25.20518 -23.90513 -22.62827 -20.56693 -19.19366 -18.65960 -17.97775 -17.75231 -17.17394 -16.57005 -16.47868 -16.02813 -15.77319 -15.57873 -14.92991 -14.79440 -14.54475 -14.38316 -14.15490 -13.99880 -13.76326 -13.52793 -13.21436 -13.09315 -13.05842 -12.95210 -12.73136 -12.64372 -12.31590 -12.25203 -11.74661 -11.38765 -11.24314 -10.81254 -10.72581 -10.33339 -10.00620 -9.40603 -9.31706 -8.31008 -6.33050 -0.27818 0.05764 0.91767 1.30247 1.37813 1.45573 1.63239 1.86875 2.21540 2.32825 2.62253 2.94001 3.08377 3.53825 3.83348 3.96936 4.13618 4.29626 4.36501 4.42129 4.51672 4.53234 4.57998 4.67838 4.76994 4.81160 4.87658 5.02808 5.06700 5.14992 5.19523 5.20872 5.26697 5.42722 5.56562 5.72509 5.80385 6.21801 6.68872 6.72536 7.22431 7.36012 8.83877 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.004322 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.701223 B = 6477.286016 C = 7051.983321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.223 3.777 3 H 0.036 0.964 4 C -0.516 4.516 5 H 0.064 0.936 6 C 0.032 3.968 7 N -0.932 5.932 8 Si 0.915 3.085 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.247 1.247 12 N -0.585 5.585 13 C 0.065 3.935 14 C 0.542 3.458 15 O -0.599 6.599 16 C -0.149 4.149 17 C -0.046 4.046 18 C -0.136 4.136 19 C -0.049 4.049 20 C -0.469 4.469 21 S 1.399 4.601 22 C -0.500 4.500 23 O -0.913 6.913 24 C -0.010 4.010 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.267 0.733 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.129 0.871 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.067 0.933 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 -8.294 15.359 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.120 3.880 3 H 0.054 0.946 4 C -0.554 4.554 5 H 0.082 0.918 6 C -0.168 4.168 7 N -0.572 5.572 8 Si 0.741 3.259 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.171 1.171 12 N -0.314 5.314 13 C -0.077 4.077 14 C 0.331 3.669 15 O -0.482 6.482 16 C -0.153 4.153 17 C -0.065 4.065 18 C -0.155 4.155 19 C -0.068 4.068 20 C -0.564 4.564 21 S 1.596 4.404 22 C -0.658 4.658 23 O -0.909 6.909 24 C -0.029 4.029 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.147 0.853 33 H 0.171 0.829 34 H 0.147 0.853 35 H 0.087 0.913 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.068 -8.518 15.156 17.418 hybrid contribution 1.154 2.599 0.981 3.008 sum 2.222 -5.919 16.137 17.331 Atomic orbital electron populations 1.22170 0.95931 1.02051 1.00050 1.19164 0.92443 0.93520 0.82853 0.94647 1.21339 1.43605 0.97630 0.92851 0.91829 1.25488 0.94514 1.01313 0.95436 1.69975 1.49433 1.37481 1.00283 0.86243 0.78988 0.82491 0.78222 1.21435 1.20263 1.17083 1.48066 1.48210 1.13636 1.21475 1.22302 1.02691 0.80187 1.02485 1.18856 0.78464 0.85460 0.84137 1.90704 1.57621 1.21098 1.78811 1.20014 1.06189 0.96088 0.92976 1.21457 0.93898 0.99740 0.91431 1.21380 1.00384 0.95188 0.98522 1.21427 0.93477 0.94121 0.97755 1.27919 1.12054 1.19824 0.96592 1.69107 0.88579 0.80661 1.02072 1.27777 1.20327 1.09040 1.08631 1.92969 1.81480 1.75069 1.41353 1.21514 0.90908 0.91898 0.98560 0.91000 0.93963 0.93141 0.92400 0.90430 0.89068 0.90017 0.85304 0.82904 0.85299 0.91335 0.85682 0.85060 0.81082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.55 8.85 71.98 0.64 -4.91 16 2 C 0.22 10.11 2.16 44.25 0.10 10.20 16 3 H 0.04 1.82 4.46 -2.39 -0.01 1.81 16 4 C -0.52 -26.90 8.84 25.60 0.23 -26.67 16 5 H 0.06 3.46 7.63 -2.91 -0.02 3.44 16 6 C 0.03 1.77 5.47 84.65 0.46 2.23 16 7 N -0.93 -54.73 13.96 21.45 0.30 -54.43 16 8 Si 0.91 44.23 26.37 68.60 1.81 46.04 16 9 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.25 -11.34 5.99 99.48 0.60 -10.74 16 12 N -0.59 -22.17 2.75 -830.22 -2.29 -24.45 16 13 C 0.06 1.72 7.97 127.77 1.02 2.73 16 14 C 0.54 21.15 7.33 86.79 0.64 21.78 16 15 O -0.60 -28.98 16.28 -3.89 -0.06 -29.05 16 16 C -0.15 -4.37 5.15 -20.09 -0.10 -4.48 16 17 C -0.05 -1.24 9.65 22.52 0.22 -1.02 16 18 C -0.14 -2.98 10.03 22.23 0.22 -2.76 16 19 C -0.05 -1.08 9.44 22.33 0.21 -0.87 16 20 C -0.47 -9.33 5.60 22.23 0.12 -9.20 16 21 S 1.40 19.88 14.18 -56.49 -0.80 19.08 16 22 C -0.50 -6.21 10.70 113.37 1.21 -5.00 16 23 O -0.91 -24.03 16.89 -148.98 -2.52 -26.55 16 24 C -0.01 -0.21 7.33 22.53 0.17 -0.04 16 25 H 0.07 2.45 6.52 -2.38 -0.02 2.43 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 2.02 6.93 -2.39 -0.02 2.00 16 28 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 29 H 0.08 1.77 6.85 -2.39 -0.02 1.76 16 30 H 0.09 1.85 6.00 -2.39 -0.01 1.83 16 31 H 0.08 2.13 6.37 -2.39 -0.02 2.12 16 32 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.13 2.86 7.44 -2.91 -0.02 2.84 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.13 1.26 8.14 -2.40 -0.02 1.24 16 38 H 0.17 2.86 5.52 -2.91 -0.02 2.85 16 Total: -1.00 -80.52 323.85 2.53 -77.99 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.97 Total: 9.37 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 5.13 Total: -18.00 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -1.99 Total: -78.88 kcal Atomic # 8 Polarization: -53.02 SS G_CDS: -2.58 Total: -55.59 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.81 Total: 46.04 kcal Atomic # 16 Polarization: 19.88 SS G_CDS: -0.80 Total: 19.08 kcal Total: -80.52 2.53 -77.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613772566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.916 kcal (2) G-P(sol) polarization free energy of solvation -80.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds