Wall clock time and date at job start Tue Mar 31 2020 07:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47029 * 2 1 4 4 C 1.50696 * 109.47190 * 120.00280 * 2 1 3 5 5 H 1.08002 * 119.99816 * 120.00076 * 4 2 1 6 6 C 1.37880 * 119.99987 * 299.99900 * 4 2 1 7 7 N 1.31514 * 119.99784 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99841 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47075 * 59.99935 * 8 6 4 10 10 H 1.48497 * 109.46997 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46965 * 299.99834 * 8 6 4 12 12 N 1.46506 * 109.47199 * 240.00401 * 2 1 3 13 13 C 1.46503 * 119.99832 * 299.99892 * 12 2 1 14 14 C 1.34770 * 120.00096 * 119.99793 * 12 2 1 15 15 O 1.21552 * 120.00075 * 6.98735 * 14 12 2 16 16 C 1.47850 * 119.99726 * 186.99366 * 14 12 2 17 17 C 1.39595 * 120.14746 * 20.28662 * 16 14 12 18 18 C 1.37929 * 119.85169 * 179.74892 * 17 16 14 19 19 C 1.38382 * 120.14573 * 0.53043 * 18 17 16 20 20 C 1.38333 * 120.29454 * 359.74222 * 19 18 17 21 21 S 1.76196 * 119.92989 * 179.97438 * 20 19 18 22 22 C 1.81400 * 103.00152 * 269.98222 * 21 20 19 23 23 O 1.42101 * 102.99896 * 23.83402 * 21 20 19 24 24 C 1.37982 * 120.14036 * 359.97438 * 20 19 18 25 25 H 1.09003 * 109.46983 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47148 * 299.99729 * 1 2 3 27 27 H 1.08998 * 109.47373 * 59.99977 * 1 2 3 28 28 H 0.96995 * 119.99419 * 179.97438 * 7 6 4 29 29 H 1.09007 * 109.47090 * 85.95252 * 13 12 2 30 30 H 1.08990 * 109.47382 * 205.95496 * 13 12 2 31 31 H 1.09005 * 109.47109 * 325.95814 * 13 12 2 32 32 H 1.08004 * 120.07269 * 0.02562 * 17 16 14 33 33 H 1.08001 * 119.92683 * 180.27465 * 18 17 16 34 34 H 1.08002 * 119.84864 * 179.72227 * 19 18 17 35 35 H 1.09003 * 109.47323 * 59.99807 * 22 21 20 36 36 H 1.09000 * 109.47380 * 180.02562 * 22 21 20 37 37 H 1.09006 * 109.46876 * 299.99719 * 22 21 20 38 38 H 1.08004 * 120.06837 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.8076 -1.1191 4.0076 10 1 1.8270 -0.4202 5.2204 11 1 1.8281 -2.5200 4.0080 12 7 2.0184 -0.6906 -1.1963 13 6 1.6645 -2.0931 -1.4282 14 6 2.7932 -0.0355 -2.0834 15 8 3.1918 1.0848 -1.8313 16 6 3.1582 -0.6796 -3.3632 17 6 2.3991 -1.7433 -3.8543 18 6 2.7421 -2.3363 -5.0514 19 6 3.8423 -1.8862 -5.7599 20 6 4.6021 -0.8364 -5.2760 21 16 6.0014 -0.2715 -6.1856 22 6 7.3534 -1.2851 -5.5257 23 8 5.7064 -0.6821 -7.5137 24 6 4.2664 -0.2306 -4.0826 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.7082 1.1606 3.4844 29 1 0.7016 -2.1457 -1.9365 30 1 2.4284 -2.5630 -2.0475 31 1 1.5999 -2.6143 -0.4729 32 1 1.5426 -2.0981 -3.3003 33 1 2.1530 -3.1564 -5.4347 34 1 4.1091 -2.3570 -6.6945 35 1 7.1368 -2.3389 -5.7017 36 1 8.2850 -1.0172 -6.0240 37 1 7.4507 -1.1081 -4.4545 38 1 4.8607 0.5888 -3.7057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613772568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:54 Heat of formation + Delta-G solvation = -20.920871 kcal Electronic energy + Delta-G solvation = -21376.129790 eV Core-core repulsion = 18118.530357 eV Total energy + Delta-G solvation = -3257.599433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.06593 -37.99104 -35.88271 -35.52990 -33.20861 -31.38343 -31.08371 -29.15482 -28.89286 -26.61091 -25.27997 -23.80345 -22.86394 -21.09408 -19.24564 -17.88947 -16.82704 -16.70909 -16.24442 -15.63920 -15.22667 -15.11623 -14.93544 -14.42276 -14.33233 -13.78825 -13.70128 -13.19694 -13.06206 -12.71423 -12.57348 -12.47339 -12.24247 -11.93301 -11.66986 -11.54959 -11.12366 -10.99789 -10.85542 -10.75109 -10.35293 -10.32817 -10.19931 -9.32594 -9.22067 -9.11831 -8.93870 -8.52048 -8.47063 -7.69079 -6.11510 -4.19777 0.73120 1.10061 1.71187 2.50427 3.16389 3.25195 3.30705 3.32232 3.69445 3.79530 4.01073 4.35950 4.78903 4.81065 4.96336 4.97845 5.07319 5.18464 5.20236 5.38848 5.58011 5.65437 5.76094 5.79828 5.84323 6.08987 6.21079 6.27121 6.30507 6.68362 6.73532 6.80078 6.99115 7.33096 7.46333 7.65812 7.95153 8.13652 8.41730 8.76083 8.93616 9.46604 10.93859 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026470 B = 0.003606 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.536638 B = 7762.952520 C = 8066.760993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.584 5.584 13 C 0.070 3.930 14 C 0.544 3.456 15 O -0.544 6.544 16 C -0.136 4.136 17 C -0.074 4.074 18 C -0.147 4.147 19 C -0.040 4.040 20 C -0.473 4.473 21 S 1.336 4.664 22 C -0.499 4.499 23 O -0.862 6.862 24 C 0.009 3.991 25 H 0.030 0.970 26 H 0.095 0.905 27 H 0.011 0.989 28 H 0.264 0.736 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.961 -4.466 -13.600 15.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.203 1.203 12 N -0.314 5.314 13 C -0.074 4.074 14 C 0.331 3.669 15 O -0.424 6.424 16 C -0.140 4.140 17 C -0.092 4.092 18 C -0.166 4.166 19 C -0.059 4.059 20 C -0.570 4.570 21 S 1.533 4.467 22 C -0.655 4.655 23 O -0.857 6.857 24 C -0.011 4.011 25 H 0.049 0.951 26 H 0.113 0.887 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.174 0.826 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.104 -3.073 -13.987 15.985 hybrid contribution -0.285 -2.988 0.751 3.094 sum 6.819 -6.061 -13.236 16.075 Atomic orbital electron populations 1.22103 0.98025 0.99483 1.00952 1.18995 0.90852 0.94563 0.79757 0.91672 1.21253 1.32026 1.13105 0.90259 0.92272 1.24882 0.94875 0.94950 0.98948 1.69861 1.36154 1.22533 1.23953 0.86546 0.79276 0.79541 0.81969 1.20203 1.21127 1.20267 1.48149 1.48442 1.11317 1.23525 1.22199 0.98500 0.83860 1.02802 1.18187 0.79549 0.85940 0.83223 1.90731 1.54209 1.19559 1.77852 1.20389 0.98186 0.98286 0.97164 1.22614 0.99116 0.92748 0.94728 1.21217 0.98287 1.01557 0.95528 1.21222 0.93487 0.93377 0.97859 1.27551 1.16308 1.06196 1.06920 1.69644 0.83840 1.10057 0.83131 1.27772 1.15056 1.12080 1.10609 1.93067 1.81373 1.81373 1.29931 1.20954 0.93906 0.95830 0.90409 0.95125 0.88653 0.96954 0.92557 0.93170 0.91453 0.90045 0.82639 0.85433 0.85628 0.90083 0.87674 0.86827 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.26 6.41 2.63 -69.08 -0.18 6.22 16 3 H 0.07 1.87 6.92 -51.93 -0.36 1.51 16 4 C -0.53 -13.89 8.02 -34.44 -0.28 -14.17 16 5 H 0.06 1.53 7.27 -52.49 -0.38 1.15 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.52 11.32 55.43 0.63 -23.90 16 8 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 12 N -0.58 -12.10 2.75 -176.37 -0.49 -12.58 16 13 C 0.07 1.12 7.67 59.85 0.46 1.58 16 14 C 0.54 11.06 7.52 -12.33 -0.09 10.97 16 15 O -0.54 -12.89 15.88 5.32 0.08 -12.81 16 16 C -0.14 -2.16 5.57 -104.97 -0.58 -2.74 16 17 C -0.07 -0.99 7.61 -39.19 -0.30 -1.29 16 18 C -0.15 -1.76 10.03 -39.64 -0.40 -2.16 16 19 C -0.04 -0.51 9.44 -39.49 -0.37 -0.88 16 20 C -0.47 -5.65 5.60 -39.64 -0.22 -5.87 16 21 S 1.34 11.90 14.18 -107.50 -1.52 10.37 16 22 C -0.50 -3.85 10.70 101.05 1.08 -2.77 16 23 O -0.86 -12.64 16.89 -35.23 -0.59 -13.23 16 24 C 0.01 0.12 9.29 -39.18 -0.36 -0.24 16 25 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 26 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.05 0.70 7.03 -51.92 -0.36 0.33 16 30 H 0.07 0.92 5.22 -51.93 -0.27 0.65 16 31 H 0.08 1.39 6.97 -51.93 -0.36 1.03 16 32 H 0.16 1.90 4.04 -52.48 -0.21 1.69 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.58 7.44 -52.49 -0.39 1.19 16 35 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.11 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.15 1.68 7.79 -52.48 -0.41 1.27 16 LS Contribution 325.61 15.07 4.91 4.91 Total: -1.00 -35.28 325.61 -7.73 -43.01 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.71 Total: 1.46 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -1.01 Total: -12.77 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.14 Total: -36.48 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.51 Total: -26.04 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 11.90 SS G_CDS: -1.52 Total: 10.37 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.28 -7.73 -43.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613772568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.088 kcal (2) G-P(sol) polarization free energy of solvation -35.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds