Wall clock time and date at job start Tue Mar 31 2020 07:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47029 * 2 1 4 4 C 1.50696 * 109.47190 * 120.00280 * 2 1 3 5 5 H 1.08002 * 119.99816 * 120.00076 * 4 2 1 6 6 C 1.37880 * 119.99987 * 299.99900 * 4 2 1 7 7 N 1.31514 * 119.99784 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99841 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47075 * 59.99935 * 8 6 4 10 10 H 1.48497 * 109.46997 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46965 * 299.99834 * 8 6 4 12 12 N 1.46506 * 109.47199 * 240.00401 * 2 1 3 13 13 C 1.46503 * 119.99832 * 299.99892 * 12 2 1 14 14 C 1.34770 * 120.00096 * 119.99793 * 12 2 1 15 15 O 1.21552 * 120.00075 * 6.98735 * 14 12 2 16 16 C 1.47850 * 119.99726 * 186.99366 * 14 12 2 17 17 C 1.39595 * 120.14746 * 20.28662 * 16 14 12 18 18 C 1.37929 * 119.85169 * 179.74892 * 17 16 14 19 19 C 1.38382 * 120.14573 * 0.53043 * 18 17 16 20 20 C 1.38333 * 120.29454 * 359.74222 * 19 18 17 21 21 S 1.76196 * 119.92989 * 179.97438 * 20 19 18 22 22 C 1.81400 * 103.00152 * 269.98222 * 21 20 19 23 23 O 1.42101 * 102.99896 * 23.83402 * 21 20 19 24 24 C 1.37982 * 120.14036 * 359.97438 * 20 19 18 25 25 H 1.09003 * 109.46983 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47148 * 299.99729 * 1 2 3 27 27 H 1.08998 * 109.47373 * 59.99977 * 1 2 3 28 28 H 0.96995 * 119.99419 * 179.97438 * 7 6 4 29 29 H 1.09007 * 109.47090 * 85.95252 * 13 12 2 30 30 H 1.08990 * 109.47382 * 205.95496 * 13 12 2 31 31 H 1.09005 * 109.47109 * 325.95814 * 13 12 2 32 32 H 1.08004 * 120.07269 * 0.02562 * 17 16 14 33 33 H 1.08001 * 119.92683 * 180.27465 * 18 17 16 34 34 H 1.08002 * 119.84864 * 179.72227 * 19 18 17 35 35 H 1.09003 * 109.47323 * 59.99807 * 22 21 20 36 36 H 1.09000 * 109.47380 * 180.02562 * 22 21 20 37 37 H 1.09006 * 109.46876 * 299.99719 * 22 21 20 38 38 H 1.08004 * 120.06837 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.8076 -1.1191 4.0076 10 1 1.8270 -0.4202 5.2204 11 1 1.8281 -2.5200 4.0080 12 7 2.0184 -0.6906 -1.1963 13 6 1.6645 -2.0931 -1.4282 14 6 2.7932 -0.0355 -2.0834 15 8 3.1918 1.0848 -1.8313 16 6 3.1582 -0.6796 -3.3632 17 6 2.3991 -1.7433 -3.8543 18 6 2.7421 -2.3363 -5.0514 19 6 3.8423 -1.8862 -5.7599 20 6 4.6021 -0.8364 -5.2760 21 16 6.0014 -0.2715 -6.1856 22 6 7.3534 -1.2851 -5.5257 23 8 5.7064 -0.6821 -7.5137 24 6 4.2664 -0.2306 -4.0826 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.7082 1.1606 3.4844 29 1 0.7016 -2.1457 -1.9365 30 1 2.4284 -2.5630 -2.0475 31 1 1.5999 -2.6143 -0.4729 32 1 1.5426 -2.0981 -3.3003 33 1 2.1530 -3.1564 -5.4347 34 1 4.1091 -2.3570 -6.6945 35 1 7.1368 -2.3389 -5.7017 36 1 8.2850 -1.0172 -6.0240 37 1 7.4507 -1.1081 -4.4545 38 1 4.8607 0.5888 -3.7057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613772568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:53 Heat of formation + Delta-G solvation = -45.184695 kcal Electronic energy + Delta-G solvation = -21377.181948 eV Core-core repulsion = 18118.530357 eV Total energy + Delta-G solvation = -3258.651591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41001 -39.28956 -37.24465 -36.87157 -35.00390 -32.79568 -32.13076 -30.73542 -29.61561 -28.01194 -27.29733 -25.14532 -23.88189 -22.63504 -20.69970 -19.05865 -18.46224 -17.86592 -17.69204 -17.11283 -16.52003 -16.40012 -16.01901 -15.78093 -15.69516 -14.89722 -14.70072 -14.45910 -14.35860 -14.19929 -13.73965 -13.64829 -13.44527 -13.36603 -12.95504 -12.83281 -12.75607 -12.69240 -12.61457 -12.22152 -12.12889 -12.01741 -11.36950 -11.20141 -10.73124 -10.49567 -10.24776 -10.06748 -9.36523 -9.33559 -8.13520 -6.29910 -0.30172 0.07169 0.89570 1.43325 1.45298 1.52696 1.66814 1.93315 2.26063 2.47656 2.68817 2.96213 3.14902 3.54103 3.85756 3.97552 4.10697 4.30770 4.38789 4.39704 4.51166 4.56998 4.59392 4.77425 4.86084 4.90706 4.96780 5.04588 5.09690 5.17149 5.22745 5.25304 5.48437 5.57143 5.66887 5.77938 6.03117 6.16693 6.75565 6.76943 7.27167 7.44467 8.90713 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026470 B = 0.003606 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.536638 B = 7762.952520 C = 8066.760993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.013 0.987 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.264 1.264 12 N -0.593 5.593 13 C 0.066 3.934 14 C 0.537 3.463 15 O -0.592 6.592 16 C -0.159 4.159 17 C -0.073 4.073 18 C -0.139 4.139 19 C -0.049 4.049 20 C -0.474 4.474 21 S 1.392 4.608 22 C -0.496 4.496 23 O -0.915 6.915 24 C 0.007 3.993 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.021 0.979 28 H 0.265 0.735 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 -6.575 -14.461 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.031 0.969 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.788 3.212 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.188 1.188 12 N -0.322 5.322 13 C -0.076 4.076 14 C 0.327 3.673 15 O -0.475 6.475 16 C -0.163 4.163 17 C -0.091 4.091 18 C -0.158 4.158 19 C -0.068 4.068 20 C -0.570 4.570 21 S 1.590 4.410 22 C -0.654 4.654 23 O -0.911 6.911 24 C -0.013 4.013 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.186 0.814 33 H 0.177 0.823 34 H 0.146 0.854 35 H 0.088 0.912 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.803 -5.222 -14.870 17.586 hybrid contribution -0.420 -2.335 0.948 2.555 sum 7.384 -7.557 -13.921 17.476 Atomic orbital electron populations 1.21887 0.96883 1.00258 1.00123 1.18592 0.91664 0.92347 0.81386 0.96872 1.21520 1.32040 1.13149 0.91132 0.92158 1.25697 0.95019 0.95597 1.01900 1.70005 1.37144 1.23803 1.24526 0.85535 0.78437 0.78951 0.78244 1.20258 1.20935 1.18830 1.48111 1.48575 1.13047 1.22431 1.22478 1.00864 0.81080 1.03128 1.18884 0.78523 0.85487 0.84411 1.90689 1.55990 1.21718 1.79138 1.20129 1.00360 1.00061 0.95735 1.22701 0.99056 0.91975 0.95353 1.21512 0.97970 1.01772 0.94511 1.21485 0.93849 0.93471 0.98042 1.27862 1.17271 1.05597 1.06239 1.69136 0.82340 1.09080 0.80453 1.27739 1.14872 1.10869 1.11922 1.92960 1.82262 1.82676 1.33226 1.21101 0.93431 0.96102 0.90625 0.93352 0.91233 0.95975 0.92590 0.90366 0.88770 0.91111 0.81402 0.82302 0.85397 0.91191 0.85664 0.85054 0.82403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.24 8.97 71.98 0.65 -5.60 16 2 C 0.26 13.37 2.63 44.24 0.12 13.48 16 3 H 0.01 0.81 6.92 -2.39 -0.02 0.79 16 4 C -0.54 -28.80 8.02 25.60 0.21 -28.59 16 5 H 0.06 3.12 7.27 -2.91 -0.02 3.10 16 6 C 0.02 0.95 5.30 84.66 0.45 1.40 16 7 N -0.92 -51.87 11.32 21.45 0.24 -51.62 16 8 Si 0.96 42.18 29.54 68.60 2.03 44.21 16 9 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 12 N -0.59 -24.63 2.75 -830.20 -2.29 -26.91 16 13 C 0.07 2.01 7.67 127.77 0.98 2.99 16 14 C 0.54 22.19 7.52 86.79 0.65 22.84 16 15 O -0.59 -29.35 15.88 -3.88 -0.06 -29.41 16 16 C -0.16 -4.89 5.57 -20.09 -0.11 -5.00 16 17 C -0.07 -1.78 7.61 22.52 0.17 -1.61 16 18 C -0.14 -2.90 10.03 22.23 0.22 -2.67 16 19 C -0.05 -1.13 9.44 22.33 0.21 -0.92 16 20 C -0.47 -10.46 5.60 22.23 0.12 -10.34 16 21 S 1.39 22.24 14.18 -56.49 -0.80 21.44 16 22 C -0.50 -6.30 10.70 113.37 1.21 -5.08 16 23 O -0.92 -25.59 16.89 -148.98 -2.52 -28.10 16 24 C 0.01 0.19 9.29 22.53 0.21 0.40 16 25 H 0.05 2.04 7.67 -2.39 -0.02 2.02 16 26 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 27 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.08 1.94 7.03 -2.38 -0.02 1.92 16 30 H 0.09 2.35 5.22 -2.39 -0.01 2.34 16 31 H 0.07 2.31 6.97 -2.38 -0.02 2.29 16 32 H 0.17 3.59 4.04 -2.91 -0.01 3.58 16 33 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 34 H 0.13 2.93 7.44 -2.91 -0.02 2.91 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.16 3.54 7.79 -2.91 -0.02 3.52 16 Total: -1.00 -78.73 325.61 2.77 -75.96 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 1.08 Total: 13.15 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 5.09 Total: -18.72 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -2.04 Total: -78.54 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -2.58 Total: -57.51 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 22.24 SS G_CDS: -0.80 Total: 21.44 kcal Total: -78.73 2.77 -75.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613772568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.777 kcal (2) G-P(sol) polarization free energy of solvation -78.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds